Wall clock time and date at job start Tue Mar 31 2020 07:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47536 * 2 1 4 4 C 1.53001 * 109.47206 * 119.99898 * 2 1 3 5 5 N 1.46504 * 109.47190 * 174.99734 * 4 2 1 6 6 C 1.46503 * 120.00042 * 275.11869 * 5 4 2 7 7 C 1.50698 * 109.47040 * 270.27295 * 6 5 4 8 8 H 1.08000 * 120.00249 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00253 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99834 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47369 * 89.99578 * 11 9 7 13 13 H 1.48499 * 109.47055 * 210.00066 * 11 9 7 14 14 H 1.48498 * 109.47082 * 329.99785 * 11 9 7 15 15 C 1.34770 * 119.99941 * 95.39350 * 5 4 2 16 16 O 1.21611 * 119.99766 * 354.86865 * 15 5 4 17 17 C 1.47391 * 120.00335 * 174.86847 * 15 5 4 18 18 C 1.40222 * 120.21135 * 268.09112 * 17 15 5 19 19 O 1.35660 * 120.14030 * 359.97438 * 18 17 15 20 20 C 1.38596 * 119.72763 * 179.97438 * 18 17 15 21 21 C 1.38183 * 120.15122 * 0.02562 * 20 18 17 22 22 C 1.38364 * 120.43620 * 359.97361 * 21 20 18 23 23 C 1.38175 * 120.27180 * 359.76440 * 22 21 20 24 24 F 1.35102 * 120.08564 * 180.27757 * 23 22 21 25 25 H 1.08997 * 109.46933 * 299.99888 * 1 2 3 26 26 H 1.08993 * 109.47412 * 59.99773 * 1 2 3 27 27 H 1.09005 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46905 * 239.99663 * 2 1 3 29 29 H 1.09010 * 109.47259 * 305.29549 * 3 2 1 30 30 H 1.09002 * 109.47616 * 65.28824 * 3 2 1 31 31 H 1.08997 * 109.47654 * 185.29374 * 3 2 1 32 32 H 1.09003 * 109.46961 * 55.00480 * 4 2 1 33 33 H 1.08992 * 109.47473 * 295.00120 * 4 2 1 34 34 H 1.09004 * 109.47319 * 30.27449 * 6 5 4 35 35 H 1.09002 * 109.46942 * 150.27291 * 6 5 4 36 36 H 0.97001 * 119.99824 * 180.02562 * 10 9 7 37 37 H 0.96693 * 113.99785 * 86.26564 * 19 18 17 38 38 H 1.07999 * 119.92391 * 180.02562 * 20 18 17 39 39 H 1.08001 * 119.77788 * 180.02562 * 21 20 18 40 40 H 1.08004 * 119.86417 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1261 -1.9339 0.4640 7 6 4.3259 -3.0988 1.3989 8 1 4.0170 -3.0221 2.4309 9 6 4.9020 -4.2630 0.9364 10 7 5.0759 -5.2798 1.7521 11 14 5.4355 -4.3959 -0.8488 12 1 6.8428 -3.9404 -0.9802 13 1 5.3290 -5.8088 -1.2934 14 1 4.5588 -3.5442 -1.6922 15 6 4.2673 0.0925 1.8096 16 8 3.7516 1.0593 2.3373 17 6 5.7313 -0.0741 1.8472 18 6 6.3385 -0.7373 2.9231 19 8 5.5810 -1.2286 3.9356 20 6 7.7160 -0.8888 2.9480 21 6 8.4880 -0.3881 1.9171 22 6 7.8956 0.2673 0.8522 23 6 6.5235 0.4236 0.8067 24 9 5.9485 1.0593 -0.2376 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6013 1.9830 -0.8388 30 1 1.7562 1.9283 0.9335 31 1 3.1259 1.4439 -0.0948 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.4821 -2.2369 -0.3617 35 1 5.0913 -1.6122 0.0728 36 1 5.4816 -6.0986 1.4268 37 1 5.2374 -2.1178 3.7740 38 1 8.1870 -1.3994 3.7749 39 1 9.5608 -0.5100 1.9424 40 1 8.5079 0.6546 0.0512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228846756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:25 Heat of formation + Delta-G solvation = -124.035532 kcal Electronic energy + Delta-G solvation = -25341.740616 eV Core-core repulsion = 21649.289715 eV Total energy + Delta-G solvation = -3692.450902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.07637 -41.49894 -39.89047 -37.56940 -37.46883 -35.79915 -34.30704 -32.04446 -30.75546 -30.03302 -28.08443 -27.41530 -24.97262 -24.09557 -23.66125 -21.50762 -20.42413 -19.67476 -19.05917 -18.36628 -17.98912 -17.72201 -17.30015 -16.64968 -16.41932 -16.11189 -15.70390 -15.68171 -15.52940 -14.95219 -14.85416 -14.48410 -14.23791 -13.99950 -13.61461 -13.31558 -13.18900 -13.07169 -12.88969 -12.73048 -12.65319 -12.58357 -12.37469 -11.98242 -11.93073 -11.86534 -11.70167 -11.59464 -10.94948 -10.79240 -9.91469 -9.67859 -9.49406 -8.31742 -6.37708 -0.06453 0.07440 1.34929 1.39306 1.45704 1.48518 2.12611 2.31440 2.41865 2.93035 3.02196 3.40548 3.46084 3.86911 3.90829 3.99113 4.04638 4.13119 4.27741 4.50488 4.57846 4.62490 4.64630 4.71341 4.79551 4.83691 4.88415 4.97329 5.00595 5.03107 5.16028 5.19875 5.26395 5.36415 5.40680 5.41928 5.63223 5.71192 6.13089 6.47186 6.52844 6.68524 7.10581 7.29053 8.81957 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.008956 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.151774 B = 3125.576447 C = 4343.586070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.128 4.128 4 C 0.118 3.882 5 N -0.581 5.581 6 C 0.219 3.781 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.039 3.961 10 N -0.925 5.925 11 Si 0.918 3.082 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.252 1.252 15 C 0.570 3.430 16 O -0.576 6.576 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.507 6.507 20 C -0.156 4.156 21 C -0.050 4.050 22 C -0.161 4.161 23 C 0.113 3.887 24 F -0.142 7.142 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.026 0.974 36 H 0.269 0.731 37 H 0.405 0.595 38 H 0.160 0.840 39 H 0.188 0.812 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 7.733 -4.761 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.310 5.310 6 C 0.098 3.902 7 C -0.573 4.573 8 H 0.068 0.932 9 C -0.162 4.162 10 N -0.564 5.564 11 Si 0.742 3.258 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.176 1.176 15 C 0.358 3.642 16 O -0.458 6.458 17 C -0.204 4.204 18 C 0.121 3.879 19 O -0.321 6.321 20 C -0.174 4.174 21 C -0.068 4.068 22 C -0.179 4.179 23 C 0.093 3.907 24 F -0.121 7.121 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.266 0.734 38 H 0.177 0.823 39 H 0.205 0.795 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.349 8.566 -4.266 10.139 hybrid contribution -0.253 -0.942 -0.777 1.247 sum 3.096 7.624 -5.043 9.651 Atomic orbital electron populations 1.21702 0.92274 1.02572 1.02656 1.21480 0.97694 0.96110 0.97427 1.21675 0.99377 0.96074 1.01447 1.21645 0.78792 1.01116 0.98855 1.47918 1.06809 1.25429 1.50817 1.19590 0.93573 0.84601 0.92482 1.21319 1.41272 0.97500 0.97241 0.93237 1.25453 0.94825 0.94926 1.01002 1.69980 1.44312 1.04895 1.37232 0.86138 0.80203 0.78054 0.81393 1.18739 1.20784 1.17565 1.18035 0.86672 0.82012 0.77497 1.90681 1.75111 1.31631 1.48361 1.20354 0.94237 1.07906 0.97899 1.18371 0.90671 0.93312 0.85585 1.84574 1.69535 1.38068 1.39931 1.21730 0.91384 1.02534 1.01769 1.21454 1.02256 0.92688 0.90389 1.21450 0.90836 1.03202 1.02463 1.17782 0.92323 0.96591 0.84014 1.91471 1.85631 1.79537 1.55429 0.92368 0.90920 0.91786 0.91499 0.91294 0.93525 0.95764 0.90103 0.91440 0.94036 0.95584 0.92161 0.73405 0.82264 0.79513 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.19 71.98 0.66 -2.54 16 2 C -0.11 -3.36 3.12 -10.80 -0.03 -3.39 16 3 C -0.13 -4.21 7.92 71.98 0.57 -3.64 16 4 C 0.12 4.41 4.95 86.38 0.43 4.84 16 5 N -0.58 -24.75 2.27 -830.07 -1.88 -26.63 16 6 C 0.22 9.71 4.01 85.63 0.34 10.06 16 7 C -0.54 -26.65 9.66 25.60 0.25 -26.41 16 8 H 0.05 2.72 6.78 -2.91 -0.02 2.70 16 9 C 0.04 1.98 5.47 84.66 0.46 2.44 16 10 N -0.93 -50.68 13.96 21.45 0.30 -50.38 16 11 Si 0.92 39.00 27.47 68.60 1.88 40.88 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 15 C 0.57 25.62 5.16 86.65 0.45 26.07 16 16 O -0.58 -28.29 15.15 -4.07 -0.06 -28.35 16 17 C -0.20 -8.22 4.12 -19.98 -0.08 -8.30 16 18 C 0.17 6.44 6.72 22.84 0.15 6.60 16 19 O -0.51 -20.90 12.95 -89.76 -1.16 -22.06 16 20 C -0.16 -4.62 9.97 22.34 0.22 -4.40 16 21 C -0.05 -1.17 10.02 22.29 0.22 -0.95 16 22 C -0.16 -4.26 10.00 22.28 0.22 -4.04 16 23 C 0.11 4.05 6.53 22.66 0.15 4.20 16 24 F -0.14 -5.27 16.83 44.97 0.76 -4.51 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.05 1.62 7.85 -2.39 -0.02 1.60 16 31 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 32 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 33 H 0.07 2.64 7.34 -2.39 -0.02 2.62 16 34 H 0.04 1.80 7.13 -2.38 -0.02 1.78 16 35 H 0.03 1.17 5.84 -2.39 -0.01 1.15 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.40 16.84 7.46 -74.06 -0.55 16.29 16 38 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -64.71 336.80 4.30 -60.40 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.45 Total: 30.12 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.02 Total: 0.54 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.58 Total: -77.02 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -1.22 Total: -50.42 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.76 Total: -4.51 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.88 Total: 40.88 kcal Total: -64.71 4.30 -60.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228846756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.633 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds