Wall clock time and date at job start Tue Mar 31 2020 07:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53012 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47266 * 119.99823 * 2 1 3 5 5 C 1.53000 * 109.47252 * 175.00215 * 4 2 1 6 6 N 1.46504 * 109.47304 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99880 * 270.00471 * 6 5 4 8 8 C 1.50703 * 109.47077 * 269.99336 * 7 6 5 9 9 H 1.08005 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47148 * 89.99653 * 12 10 8 14 14 H 1.48496 * 109.47010 * 210.00013 * 12 10 8 15 15 H 1.48497 * 109.46708 * 330.00096 * 12 10 8 16 16 C 1.34777 * 119.99854 * 89.99731 * 6 5 4 17 17 O 1.21274 * 120.00135 * 180.27973 * 16 6 5 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 6 5 19 19 C 1.50699 * 109.46817 * 179.97438 * 18 16 6 20 20 C 1.33387 * 125.20302 * 90.00078 * 19 18 16 21 21 C 1.38427 * 114.92248 * 179.97438 * 20 19 18 22 22 C 1.33389 * 114.91962 * 359.97438 * 21 20 19 23 23 S 1.75885 * 125.20377 * 269.69741 * 19 18 16 24 24 H 1.08999 * 109.47409 * 300.00206 * 1 2 3 25 25 H 1.08998 * 109.46911 * 60.00241 * 1 2 3 26 26 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47715 * 240.00466 * 2 1 3 28 28 H 1.08998 * 109.46885 * 300.00144 * 3 2 1 29 29 H 1.08998 * 109.46841 * 60.00061 * 3 2 1 30 30 H 1.09002 * 109.46997 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46797 * 55.00399 * 4 2 1 32 32 H 1.08996 * 109.47043 * 295.00472 * 4 2 1 33 33 H 1.09001 * 109.46783 * 60.00088 * 5 4 2 34 34 H 1.08996 * 109.47306 * 300.00095 * 5 4 2 35 35 H 1.08997 * 109.47682 * 29.99532 * 7 6 5 36 36 H 1.09004 * 109.47271 * 149.99629 * 7 6 5 37 37 H 0.96999 * 119.99754 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47161 * 299.99737 * 18 16 6 39 39 H 1.09001 * 109.46740 * 59.99879 * 18 16 6 40 40 H 1.08000 * 122.54441 * 359.95442 * 20 19 18 41 41 H 1.07998 * 122.53982 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.20312 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1880 6 7 4.0533 -1.5210 2.3845 7 6 4.4016 -0.7527 3.5822 8 6 5.8555 -0.3608 3.5224 9 1 6.4595 -0.6543 2.6765 10 6 6.4146 0.3724 4.5474 11 7 5.6790 0.7302 5.5772 12 14 8.2167 0.8588 4.4730 13 1 8.3470 2.1733 3.7945 14 1 8.7602 0.9572 5.8514 15 1 8.9753 -0.1674 3.7137 16 6 4.1820 -2.8626 2.3833 17 8 4.5815 -3.4343 3.3754 18 6 3.8241 -3.6528 1.1510 19 6 4.0569 -5.1191 1.4093 20 6 3.1520 -5.9663 1.9020 21 6 3.5943 -7.2692 2.0532 22 6 4.8583 -7.4802 1.6828 23 16 5.5611 -5.9768 1.1004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6055 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1676 1.1421 34 1 3.8533 -1.3939 0.3003 35 1 3.7851 0.1448 3.6303 36 1 4.2258 -1.3622 4.4687 37 1 6.0722 1.2464 6.2982 38 1 2.7746 -3.4888 0.9063 39 1 4.4467 -3.3277 0.3174 40 1 2.1502 -5.6589 2.1634 41 1 2.9636 -8.0555 2.4408 42 1 5.3705 -8.4299 1.7297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264017426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:51 Heat of formation + Delta-G solvation = -23.203021 kcal Electronic energy + Delta-G solvation = -21686.919098 eV Core-core repulsion = 18565.053798 eV Total energy + Delta-G solvation = -3121.865300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.29005 -37.51547 -36.70650 -34.46036 -32.72635 -31.79208 -29.07383 -27.70319 -27.07871 -26.21987 -23.48536 -23.26723 -22.21992 -19.89068 -19.13787 -18.46213 -16.93122 -16.45942 -16.32287 -15.64089 -15.15518 -14.95697 -14.45574 -14.16749 -13.90475 -13.65775 -12.94741 -12.84277 -12.65804 -12.55651 -12.29667 -12.16802 -12.08459 -12.03526 -11.72994 -11.32276 -11.28034 -11.15889 -10.86556 -10.81616 -10.58354 -10.57190 -10.48678 -10.33099 -10.10872 -9.59496 -9.00499 -8.42542 -8.38579 -8.24644 -7.63052 -6.02858 -4.07322 1.18509 1.83843 2.20412 2.92777 3.30607 3.37341 3.40303 3.45855 3.97041 4.46278 4.87260 4.90857 4.94638 5.01761 5.17989 5.23856 5.31418 5.37594 5.43840 5.55412 5.63923 5.69595 5.72404 5.76856 5.77523 5.82024 5.91905 6.02109 6.16140 6.18338 6.27262 6.28295 6.45094 6.49803 6.55494 6.66127 7.08316 7.46548 7.56718 7.93815 8.25369 8.43318 8.91951 9.11507 9.57778 11.05187 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.005919 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.799964 B = 4729.556943 C = 7204.593595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.134 4.134 5 C 0.109 3.891 6 N -0.597 5.597 7 C 0.248 3.752 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.506 3.494 17 O -0.529 6.529 18 C -0.075 4.075 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.224 4.224 23 S 0.105 5.895 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -7.802 -13.716 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.173 4.173 5 C -0.015 4.015 6 N -0.328 5.328 7 C 0.129 3.871 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.291 3.709 17 O -0.406 6.406 18 C -0.117 4.117 19 C -0.258 4.258 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.360 4.360 23 S 0.369 5.631 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.874 -7.596 -13.549 16.986 hybrid contribution -0.368 -0.023 0.660 0.756 sum -7.242 -7.619 -12.889 16.632 Atomic orbital electron populations 1.21832 0.95511 1.01442 1.01546 1.21062 0.95445 0.96588 0.98147 1.21913 1.01707 0.95745 1.01470 1.22124 0.96398 1.00476 0.98255 1.21556 0.93159 0.99058 0.87730 1.48223 1.63438 1.05550 1.15635 1.19254 0.95449 0.90484 0.81943 1.21430 0.95453 1.33699 1.05770 0.92537 1.24922 0.98094 0.95930 0.95103 1.69933 1.36096 1.38288 1.09073 0.86527 0.85048 0.78680 0.77375 1.20644 1.21094 1.19889 1.20104 0.79199 0.82709 0.88869 1.90696 1.45558 1.69398 1.34910 1.20321 1.03880 0.88845 0.98656 1.23897 0.96537 0.98401 1.06969 1.20006 1.01066 0.92852 1.02933 1.20069 0.95677 0.97258 1.03118 1.25520 0.99059 1.01495 1.09882 1.84217 1.15249 1.00584 1.63058 0.92680 0.93010 0.92928 0.91360 0.93197 0.92502 0.91995 0.92260 0.91165 0.89688 0.91839 0.95036 0.93963 0.92761 0.87746 0.88546 0.84671 0.84665 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.04 16 2 C -0.09 -0.99 2.92 -90.61 -0.26 -1.25 16 3 C -0.15 -1.65 8.95 37.16 0.33 -1.32 16 4 C -0.13 -1.76 5.01 -26.73 -0.13 -1.89 16 5 C 0.11 1.70 4.97 -4.04 -0.02 1.68 16 6 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 7 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 8 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 12 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.51 10.51 7.67 -10.98 -0.08 10.43 16 17 O -0.53 -13.54 15.61 5.56 0.09 -13.46 16 18 C -0.08 -1.14 4.75 -29.03 -0.14 -1.27 16 19 C -0.14 -2.19 5.00 -36.00 -0.18 -2.37 16 20 C -0.14 -2.00 10.05 -41.21 -0.41 -2.42 16 21 C -0.13 -1.69 10.18 -41.21 -0.42 -2.11 16 22 C -0.22 -2.88 11.23 29.04 0.33 -2.55 16 23 S 0.11 1.55 23.33 -107.50 -2.51 -0.96 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 31 H 0.06 0.74 7.22 -51.93 -0.38 0.37 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16 34 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.29 7.19 -51.93 -0.37 0.92 16 39 H 0.10 1.29 7.40 -51.93 -0.38 0.90 16 40 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -33.19 359.54 -9.54 -42.73 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.72 Total: -0.68 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.10 Total: -11.24 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.31 Total: -38.80 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.19 -9.54 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264017426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.526 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds