Wall clock time and date at job start Tue Mar 31 2020 07:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53012 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47266 * 119.99823 * 2 1 3 5 5 C 1.53000 * 109.47252 * 175.00215 * 4 2 1 6 6 N 1.46504 * 109.47304 * 179.97438 * 5 4 2 7 7 C 1.46496 * 119.99880 * 270.00471 * 6 5 4 8 8 C 1.50703 * 109.47077 * 269.99336 * 7 6 5 9 9 H 1.08005 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47148 * 89.99653 * 12 10 8 14 14 H 1.48496 * 109.47010 * 210.00013 * 12 10 8 15 15 H 1.48497 * 109.46708 * 330.00096 * 12 10 8 16 16 C 1.34777 * 119.99854 * 89.99731 * 6 5 4 17 17 O 1.21274 * 120.00135 * 180.27973 * 16 6 5 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 6 5 19 19 C 1.50699 * 109.46817 * 179.97438 * 18 16 6 20 20 C 1.33387 * 125.20302 * 90.00078 * 19 18 16 21 21 C 1.38427 * 114.92248 * 179.97438 * 20 19 18 22 22 C 1.33389 * 114.91962 * 359.97438 * 21 20 19 23 23 S 1.75885 * 125.20377 * 269.69741 * 19 18 16 24 24 H 1.08999 * 109.47409 * 300.00206 * 1 2 3 25 25 H 1.08998 * 109.46911 * 60.00241 * 1 2 3 26 26 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47715 * 240.00466 * 2 1 3 28 28 H 1.08998 * 109.46885 * 300.00144 * 3 2 1 29 29 H 1.08998 * 109.46841 * 60.00061 * 3 2 1 30 30 H 1.09002 * 109.46997 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46797 * 55.00399 * 4 2 1 32 32 H 1.08996 * 109.47043 * 295.00472 * 4 2 1 33 33 H 1.09001 * 109.46783 * 60.00088 * 5 4 2 34 34 H 1.08996 * 109.47306 * 300.00095 * 5 4 2 35 35 H 1.08997 * 109.47682 * 29.99532 * 7 6 5 36 36 H 1.09004 * 109.47271 * 149.99629 * 7 6 5 37 37 H 0.96999 * 119.99754 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47161 * 299.99737 * 18 16 6 39 39 H 1.09001 * 109.46740 * 59.99879 * 18 16 6 40 40 H 1.08000 * 122.54441 * 359.95442 * 20 19 18 41 41 H 1.07998 * 122.53982 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.20312 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1880 6 7 4.0533 -1.5210 2.3845 7 6 4.4016 -0.7527 3.5822 8 6 5.8555 -0.3608 3.5224 9 1 6.4595 -0.6543 2.6765 10 6 6.4146 0.3724 4.5474 11 7 5.6790 0.7302 5.5772 12 14 8.2167 0.8588 4.4730 13 1 8.3470 2.1733 3.7945 14 1 8.7602 0.9572 5.8514 15 1 8.9753 -0.1674 3.7137 16 6 4.1820 -2.8626 2.3833 17 8 4.5815 -3.4343 3.3754 18 6 3.8241 -3.6528 1.1510 19 6 4.0569 -5.1191 1.4093 20 6 3.1520 -5.9663 1.9020 21 6 3.5943 -7.2692 2.0532 22 6 4.8583 -7.4802 1.6828 23 16 5.5611 -5.9768 1.1004 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6055 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1676 1.1421 34 1 3.8533 -1.3939 0.3003 35 1 3.7851 0.1448 3.6303 36 1 4.2258 -1.3622 4.4687 37 1 6.0722 1.2464 6.2982 38 1 2.7746 -3.4888 0.9063 39 1 4.4467 -3.3277 0.3174 40 1 2.1502 -5.6589 2.1634 41 1 2.9636 -8.0555 2.4408 42 1 5.3705 -8.4299 1.7297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264017426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:50 Heat of formation + Delta-G solvation = -41.668818 kcal Electronic energy + Delta-G solvation = -21687.719835 eV Core-core repulsion = 18565.053798 eV Total energy + Delta-G solvation = -3122.666037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86164 -38.61001 -37.89709 -36.06306 -34.70644 -33.12384 -30.54681 -29.17047 -27.92553 -27.74104 -25.11409 -24.53657 -23.66584 -20.81971 -20.31212 -19.91661 -18.61340 -18.15133 -17.84616 -17.09090 -16.56654 -16.18961 -15.93113 -15.71419 -14.99569 -14.77865 -14.43593 -14.26859 -13.84498 -13.80789 -13.62966 -13.43533 -13.34896 -13.13570 -13.07880 -12.90717 -12.66616 -12.58583 -12.46873 -12.26762 -12.09769 -11.82989 -11.64385 -11.55476 -11.46872 -11.35975 -10.66330 -10.64583 -9.52966 -9.40382 -9.33922 -8.22788 -6.37422 0.10191 0.77218 1.14792 1.34517 1.37687 1.47836 1.82870 1.87158 2.32409 2.49055 3.06634 3.65645 3.82597 3.95160 4.05273 4.16608 4.22564 4.27710 4.36563 4.47743 4.56935 4.71991 4.74180 4.78289 4.86631 4.88205 4.99666 5.03967 5.11131 5.18886 5.20794 5.23632 5.25662 5.39595 5.41524 5.53293 5.57290 5.61378 5.63477 5.86165 6.06597 6.69875 6.80304 7.28270 7.49516 8.84160 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.005919 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.799964 B = 4729.556943 C = 7204.593595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.125 4.125 5 C 0.105 3.895 6 N -0.601 5.601 7 C 0.265 3.735 8 C -0.540 4.540 9 H 0.052 0.948 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.274 1.274 16 C 0.498 3.502 17 O -0.588 6.588 18 C -0.059 4.059 19 C -0.169 4.169 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.214 4.214 23 S 0.071 5.929 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.020 0.980 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -8.632 -16.065 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.164 4.164 5 C -0.017 4.017 6 N -0.332 5.332 7 C 0.144 3.856 8 C -0.579 4.579 9 H 0.070 0.930 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.789 3.211 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.198 1.198 16 C 0.286 3.714 17 O -0.468 6.468 18 C -0.100 4.100 19 C -0.287 4.287 20 C -0.170 4.170 21 C -0.170 4.170 22 C -0.349 4.349 23 S 0.334 5.666 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.038 0.962 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.218 -8.409 -15.953 19.424 hybrid contribution -0.319 0.188 1.429 1.476 sum -7.537 -8.221 -14.524 18.312 Atomic orbital electron populations 1.21815 0.94408 1.02130 1.01806 1.21045 0.96280 0.95925 0.97302 1.21929 1.01075 0.96335 1.01665 1.22040 0.94478 1.01163 0.98726 1.21858 0.94701 0.98479 0.86678 1.48222 1.63390 1.05972 1.15568 1.18654 0.94529 0.89551 0.82866 1.21697 0.96500 1.33880 1.05832 0.92985 1.25836 1.02829 0.95783 0.94612 1.70055 1.38146 1.38859 1.09763 0.85460 0.79155 0.78920 0.77580 1.18668 1.20648 1.19841 1.21132 0.77738 0.82494 0.90049 1.90657 1.48137 1.70481 1.37561 1.20264 1.06161 0.87844 0.95755 1.24025 0.97010 0.98704 1.08933 1.20371 1.01560 0.93484 1.01629 1.20412 0.96157 0.97461 1.03016 1.25900 0.98969 1.01526 1.08549 1.84278 1.16016 1.02375 1.63889 0.93756 0.91473 0.92045 0.89132 0.91301 0.94036 0.92990 0.91059 0.93881 0.90960 0.88259 0.96174 0.98758 0.92456 0.84429 0.86368 0.83443 0.81827 0.79473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 2 C -0.09 -1.63 2.92 -10.79 -0.03 -1.66 16 3 C -0.15 -3.15 8.95 71.99 0.64 -2.51 16 4 C -0.13 -3.17 5.01 30.59 0.15 -3.01 16 5 C 0.11 3.20 4.97 86.38 0.43 3.62 16 6 N -0.60 -25.52 2.46 -826.15 -2.03 -27.55 16 7 C 0.27 14.56 5.16 85.63 0.44 15.00 16 8 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 9 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 10 C 0.01 0.49 5.46 84.65 0.46 0.95 16 11 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 12 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 16 C 0.50 20.89 7.67 87.66 0.67 21.56 16 17 O -0.59 -31.23 15.61 -3.01 -0.05 -31.27 16 18 C -0.06 -1.68 4.75 29.10 0.14 -1.55 16 19 C -0.17 -5.05 5.00 24.59 0.12 -4.93 16 20 C -0.14 -3.80 10.05 21.22 0.21 -3.58 16 21 C -0.14 -3.31 10.18 21.22 0.22 -3.10 16 22 C -0.21 -5.05 11.23 66.72 0.75 -4.30 16 23 S 0.07 2.03 23.33 -56.49 -1.32 0.71 16 24 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.16 6.56 -2.39 -0.02 1.15 16 31 H 0.07 1.63 7.22 -2.39 -0.02 1.61 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 2.39 6.49 -2.39 -0.02 2.38 16 34 H 0.10 2.32 6.44 -2.39 -0.02 2.30 16 35 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 36 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.14 2.96 7.19 -2.39 -0.02 2.94 16 39 H 0.12 2.84 7.40 -2.39 -0.02 2.83 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -75.86 359.54 5.02 -70.84 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.99 Total: 13.02 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.11 Total: -16.65 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.74 Total: -84.32 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -75.86 5.02 -70.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264017426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.172 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds