Wall clock time and date at job start Tue Mar 31 2020 07:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46940 * 2 1 4 4 C 1.50696 * 109.47110 * 180.02562 * 3 2 1 5 5 C 1.37481 * 122.45077 * 265.29723 * 4 3 2 6 6 C 1.36643 * 113.29512 * 180.17953 * 5 4 3 7 7 C 1.46586 * 125.45651 * 179.83835 * 6 5 4 8 8 O 1.21703 * 120.00024 * 359.71870 * 7 6 5 9 9 N 1.34777 * 119.99782 * 179.71542 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72446 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46940 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47129 * 60.00316 * 17 15 13 19 19 H 1.48498 * 109.47276 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47240 * 300.00255 * 17 15 13 21 21 S 1.75828 * 109.08762 * 359.57332 * 6 5 4 22 22 C 1.33815 * 122.44892 * 85.00258 * 4 3 2 23 23 C 1.50696 * 124.52172 * 0.04309 * 22 4 3 24 24 H 1.09005 * 109.47458 * 59.99500 * 1 2 3 25 25 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46945 * 299.99818 * 1 2 3 27 27 H 1.09002 * 109.47022 * 240.00688 * 2 1 3 28 28 H 1.08995 * 109.47119 * 120.00122 * 2 1 3 29 29 H 1.09006 * 109.47153 * 60.00309 * 3 2 1 30 30 H 1.08994 * 109.47861 * 300.00533 * 3 2 1 31 31 H 1.07995 * 123.34746 * 359.97438 * 5 4 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 34 34 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 35 35 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 36 36 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 37 37 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 38 38 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 39 39 H 0.97000 * 120.00572 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.47017 * 179.97438 * 23 22 4 41 41 H 1.08994 * 109.47452 * 300.00069 * 23 22 4 42 42 H 1.09002 * 109.46999 * 60.00285 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2851 1.5375 1.1553 6 6 5.6340 1.5237 0.9377 7 6 6.6639 1.6135 1.9769 8 8 6.3415 1.7149 3.1461 9 7 7.9679 1.5835 1.6377 10 6 8.9972 1.6793 2.6758 11 6 10.3820 1.6282 2.0272 12 6 11.4569 1.7289 3.1113 13 6 12.8209 1.6779 2.4725 14 1 12.9120 1.5836 1.4005 15 6 13.9526 1.7517 3.2566 16 7 13.8418 1.8660 4.5621 17 14 15.6433 1.6893 2.4648 18 1 15.7886 2.8238 1.5177 19 1 16.6866 1.7856 3.5171 20 1 15.7988 0.4081 1.7300 21 16 5.9366 1.3733 -0.7878 22 6 4.2644 1.3444 -1.1259 23 6 3.6743 1.2247 -2.5073 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8901 30 1 1.6766 1.9565 -0.8898 31 1 3.8428 1.6185 2.1372 32 1 8.2250 1.5030 0.7058 33 1 8.8831 2.6198 3.2150 34 1 8.8907 0.8466 3.3710 35 1 10.4961 0.6879 1.4880 36 1 10.4886 2.4610 1.3320 37 1 11.3427 2.6694 3.6501 38 1 11.3506 0.8963 3.8069 39 1 14.6379 1.9175 5.1138 40 1 4.4777 1.1609 -3.2413 41 1 3.0587 0.3269 -2.5630 42 1 3.0598 2.1002 -2.7170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264034463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:25 Heat of formation + Delta-G solvation = -66.130479 kcal Electronic energy + Delta-G solvation = -20229.827516 eV Core-core repulsion = 17106.100742 eV Total energy + Delta-G solvation = -3123.726774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93467 -39.62154 -37.03685 -35.24942 -35.09955 -33.33898 -32.71675 -29.70333 -28.66317 -26.75785 -25.20477 -24.04732 -22.66382 -22.40925 -21.37960 -19.69439 -18.93864 -18.53984 -17.39427 -16.85009 -16.82706 -16.43412 -15.68042 -15.66537 -15.60937 -15.01645 -14.74730 -14.35581 -14.25148 -13.87715 -13.81717 -13.64200 -13.60170 -12.97373 -12.85052 -12.72190 -12.70620 -12.58238 -12.46234 -12.33444 -11.98194 -11.71401 -11.71003 -11.63333 -11.44782 -11.30547 -11.09998 -10.55342 -10.30807 -9.63510 -9.35903 -8.19683 -6.31467 -0.54150 0.44033 0.86836 1.29516 1.41550 1.44824 1.52659 2.03610 2.08772 2.42294 3.13815 3.69180 3.81931 4.02235 4.10366 4.12140 4.15700 4.27693 4.31153 4.49572 4.53778 4.65603 4.71730 4.76077 4.88259 4.89266 4.92019 4.97216 5.04213 5.10111 5.12930 5.19096 5.23018 5.29822 5.42957 5.49734 5.50359 5.55674 5.68076 5.82605 6.20831 6.36825 6.85305 7.01932 7.37962 8.92185 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.035665 B = 0.002358 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.894349 B =11869.969317 C =12476.781596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.054 4.054 4 C -0.133 4.133 5 C -0.047 4.047 6 C -0.303 4.303 7 C 0.583 3.417 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.130 3.870 11 C -0.103 4.103 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 S 0.230 5.770 22 C -0.183 4.183 23 C -0.086 4.086 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.409 0.591 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.391 -2.339 -18.351 32.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.094 4.094 4 C -0.145 4.145 5 C -0.081 4.081 6 C -0.422 4.422 7 C 0.371 3.629 8 O -0.462 6.462 9 N -0.363 5.363 10 C 0.006 3.994 11 C -0.141 4.141 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.190 1.190 21 S 0.500 5.500 22 C -0.303 4.303 23 C -0.144 4.144 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.159 0.841 32 H 0.246 0.754 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.131 -2.334 -18.280 31.164 hybrid contribution 0.036 0.085 1.147 1.151 sum -25.096 -2.249 -17.132 30.469 Atomic orbital electron populations 1.21768 0.94657 1.02039 1.02311 1.21474 0.96404 0.95693 1.01965 1.20359 0.87368 0.97904 1.03741 1.18763 0.98657 1.06528 0.90572 1.20765 0.90909 0.95960 1.00466 1.24324 0.97581 1.21868 0.98471 1.17420 0.82323 0.75701 0.87458 1.90789 1.82432 1.52415 1.20575 1.45868 1.04994 1.73999 1.11446 1.21334 0.86804 1.01062 0.90182 1.21623 0.91291 1.02223 0.98922 1.18935 0.93249 0.95173 0.93989 1.21640 0.92028 1.50223 0.94118 0.91476 1.26044 1.04048 0.94761 0.95351 1.70105 1.30630 1.51172 1.05562 0.85447 0.78011 0.79270 0.77986 1.18993 1.21163 1.19001 1.82849 1.04056 1.67187 0.95902 1.24513 0.97798 1.06266 1.01681 1.20556 1.01539 1.04498 0.87782 0.91640 0.92481 0.92804 0.91414 0.93306 0.91053 0.89145 0.84098 0.75439 0.92730 0.92727 0.91257 0.91258 0.98837 0.98851 0.92798 0.90230 0.88849 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 3 C -0.05 -0.67 5.11 29.85 0.15 -0.52 16 4 C -0.13 -2.33 5.04 -21.05 -0.11 -2.43 16 5 C -0.05 -1.11 9.78 21.72 0.21 -0.89 16 6 C -0.30 -7.94 6.45 24.08 0.16 -7.78 16 7 C 0.58 19.64 7.78 86.42 0.67 20.31 16 8 O -0.58 -24.27 16.84 -4.36 -0.07 -24.34 16 9 N -0.71 -22.28 5.55 -467.15 -2.59 -24.88 16 10 C 0.13 4.84 5.67 86.38 0.49 5.33 16 11 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 12 C 0.02 1.28 4.97 29.85 0.15 1.43 16 13 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 17 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 S 0.23 4.14 22.08 -56.49 -1.25 2.90 16 22 C -0.18 -2.75 6.28 24.68 0.15 -2.59 16 23 C -0.09 -0.67 9.44 71.23 0.67 0.00 16 24 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.07 0.70 7.41 -2.39 -0.02 0.68 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.91 8.11 -2.38 -0.02 0.89 16 30 H 0.09 0.79 7.45 -2.39 -0.02 0.77 16 31 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.41 10.34 7.59 -92.71 -0.70 9.63 16 33 H 0.05 2.17 8.14 -2.38 -0.02 2.16 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 41 H 0.09 0.54 7.41 -2.39 -0.02 0.52 16 42 H 0.09 0.52 7.92 -2.39 -0.02 0.50 16 Total: -1.00 -71.43 364.33 3.00 -68.44 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.30 Total: 11.93 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.30 Total: -22.87 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.31 Total: -82.05 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.25 Total: 2.90 kcal Total: -71.43 3.00 -68.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264034463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.307 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds