Wall clock time and date at job start Tue Mar 31 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37465 * 123.35123 * 2 1 4 4 C 1.33818 * 115.10059 * 179.77196 * 3 2 1 5 5 S 1.70620 * 110.95575 * 0.48707 * 4 3 2 6 6 C 1.36653 * 123.34944 * 180.30431 * 2 1 3 7 7 C 1.46578 * 125.46198 * 359.97438 * 6 2 1 8 8 O 1.21700 * 120.00156 * 351.59618 * 7 6 2 9 9 N 1.34781 * 120.00137 * 171.59228 * 7 6 2 10 10 C 1.46500 * 119.99986 * 2.11595 * 9 7 6 11 11 C 1.50694 * 109.47433 * 82.43163 * 10 9 7 12 12 H 1.08003 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00324 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00319 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99451 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47196 * 90.00327 * 15 13 11 17 17 H 1.48509 * 109.46549 * 209.99973 * 15 13 11 18 18 H 1.48498 * 109.47440 * 329.99562 * 15 13 11 19 19 C 1.46499 * 119.99707 * 182.11083 * 9 7 6 20 20 C 1.52998 * 109.47169 * 94.94686 * 19 9 7 21 21 C 1.53000 * 109.46954 * 179.97438 * 20 19 9 22 22 C 1.52998 * 109.46834 * 174.99882 * 21 20 19 23 23 C 1.52999 * 109.46861 * 294.99415 * 21 20 19 24 24 H 1.09001 * 109.46661 * 269.69714 * 1 2 3 25 25 H 1.08996 * 109.47193 * 29.69961 * 1 2 3 26 26 H 1.09007 * 109.47256 * 149.70516 * 1 2 3 27 27 H 1.08002 * 122.45202 * 0.02562 * 3 2 1 28 28 H 1.08004 * 124.52224 * 180.22143 * 4 3 2 29 29 H 1.08997 * 109.47197 * 202.43605 * 10 9 7 30 30 H 1.09006 * 109.46714 * 322.43486 * 10 9 7 31 31 H 0.96996 * 120.00315 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.46704 * 214.94496 * 19 9 7 33 33 H 1.08997 * 109.47217 * 334.94137 * 19 9 7 34 34 H 1.08997 * 109.46688 * 299.99435 * 20 19 9 35 35 H 1.09000 * 109.47337 * 59.99111 * 20 19 9 36 36 H 1.08997 * 109.47446 * 54.99752 * 21 20 19 37 37 H 1.09002 * 109.47662 * 59.99645 * 22 21 20 38 38 H 1.09004 * 109.47243 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47357 * 299.99720 * 22 21 20 40 40 H 1.08998 * 109.47395 * 60.00610 * 23 21 20 41 41 H 1.09004 * 109.46951 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.47074 * 300.00011 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0048 5 16 3.9624 -0.7082 -0.0038 6 6 2.2583 -1.1415 -0.0061 7 6 1.7285 -2.5082 -0.0128 8 8 0.5364 -2.6995 0.1407 9 7 2.5614 -3.5530 -0.1891 10 6 4.0021 -3.3260 -0.3276 11 6 4.6210 -3.1781 1.0384 12 1 4.0031 -3.2467 1.9216 13 6 5.9763 -2.9561 1.1610 14 7 6.5165 -2.8275 2.3531 15 14 7.0451 -2.8381 -0.3665 16 1 7.1066 -1.4254 -0.8197 17 1 8.4150 -3.3165 -0.0501 18 1 6.4637 -3.6788 -1.4437 19 6 2.0261 -4.9156 -0.2420 20 6 1.7994 -5.3182 -1.7006 21 6 1.2409 -6.7415 -1.7559 22 6 0.8974 -7.0986 -3.2034 23 6 2.2886 -7.7214 -1.2238 24 1 -0.3633 -0.0054 1.0277 25 1 -0.3633 0.8926 -0.5091 26 1 -0.3634 -0.8874 -0.5184 27 1 1.8201 2.1334 0.0004 28 1 4.3205 1.7490 0.0090 29 1 4.4556 -4.1731 -0.8421 30 1 4.1728 -2.4168 -0.9042 31 1 7.4700 -2.6717 2.4393 32 1 2.7359 -5.6029 0.2185 33 1 1.0797 -4.9554 0.2972 34 1 1.0897 -4.6309 -2.1610 35 1 2.7458 -5.2783 -2.2399 36 1 0.3416 -6.8031 -1.1432 37 1 1.7967 -7.0371 -3.8162 38 1 0.4999 -8.1128 -3.2430 39 1 0.1510 -6.4005 -3.5826 40 1 2.5334 -7.4671 -0.1926 41 1 1.8909 -8.7355 -1.2636 42 1 3.1880 -7.6599 -1.8366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264058284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:07 Heat of formation + Delta-G solvation = -20.119360 kcal Electronic energy + Delta-G solvation = -22395.249665 eV Core-core repulsion = 19273.518083 eV Total energy + Delta-G solvation = -3121.731582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.36563 -37.42906 -36.38575 -34.91188 -32.74287 -30.51491 -29.63665 -28.03277 -27.14082 -26.89921 -23.50822 -22.90470 -22.38650 -19.98520 -19.58581 -17.63373 -17.25145 -17.17360 -15.49569 -15.36938 -14.95641 -14.58214 -14.47677 -14.06709 -13.73651 -13.38990 -12.99963 -12.95476 -12.75002 -12.57002 -12.44575 -12.29687 -12.14130 -11.71934 -11.61690 -11.47413 -11.31858 -11.15707 -10.92156 -10.85909 -10.62987 -10.52564 -10.40670 -10.21972 -9.80896 -9.38548 -9.12971 -8.95156 -8.14072 -7.82411 -7.47227 -6.40060 -4.36171 1.31648 2.43982 2.91567 3.03550 3.07016 3.13096 3.17380 3.76884 3.93842 4.09464 4.90795 4.98770 5.04533 5.07795 5.32011 5.50278 5.59942 5.66345 5.76411 5.82007 5.82179 5.91112 5.93729 5.96484 6.02690 6.06654 6.15042 6.19895 6.21750 6.29565 6.32903 6.44077 6.50137 6.54682 6.60795 6.65172 7.02150 7.11125 7.17242 7.26768 8.00683 8.23696 8.66812 8.89337 9.15457 10.71122 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.007526 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.135333 B = 3719.339870 C = 5575.469401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.049 4.049 3 C -0.163 4.163 4 C -0.319 4.319 5 S 0.352 5.648 6 C -0.286 4.286 7 C 0.594 3.406 8 O -0.558 6.558 9 N -0.592 5.592 10 C 0.198 3.802 11 C -0.535 4.535 12 H 0.087 0.913 13 C 0.090 3.910 14 N -0.872 5.872 15 Si 0.845 3.155 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.258 1.258 19 C 0.120 3.880 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.150 4.150 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.148 0.852 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.271 0.729 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -1.368 -8.523 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.457 4.457 5 S 0.630 5.370 6 C -0.407 4.407 7 C 0.384 3.616 8 O -0.440 6.440 9 N -0.321 5.321 10 C 0.074 3.926 11 C -0.577 4.577 12 H 0.105 0.895 13 C -0.117 4.117 14 N -0.508 5.508 15 Si 0.670 3.330 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.182 1.182 19 C -0.003 4.003 20 C -0.168 4.168 21 C -0.113 4.113 22 C -0.202 4.202 23 C -0.208 4.208 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.166 0.834 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.480 -2.186 -8.351 9.726 hybrid contribution -0.298 1.207 -0.519 1.347 sum -4.778 -0.980 -8.870 10.123 Atomic orbital electron populations 1.20521 0.89972 1.02311 1.02148 1.19211 0.96842 0.90794 0.99725 1.19541 0.92710 0.98372 1.08840 1.26474 1.00641 1.09130 1.09440 1.85356 1.01323 0.90106 1.60235 1.24421 0.98801 0.96869 1.20636 1.16945 0.85354 0.83303 0.75962 1.90666 1.15364 1.85505 1.52495 1.47717 1.08204 1.05661 1.70561 1.20056 0.77414 0.96556 0.98545 1.21390 0.93972 1.50317 0.91989 0.89508 1.24801 0.97353 0.93837 0.95702 1.69858 1.12669 1.46105 1.22148 0.87254 0.81358 0.80131 0.84258 1.18722 1.20073 1.18211 1.21419 1.00221 0.82675 0.95984 1.22027 1.01227 0.95720 0.97832 1.21045 0.98801 0.94743 0.96670 1.21823 1.01248 1.00825 0.96317 1.21914 0.98775 0.98385 1.01692 0.91628 0.92846 0.89944 0.86077 0.83389 0.93331 0.95271 0.91899 0.90209 0.90213 0.91892 0.91901 0.91136 0.92855 0.92987 0.92868 0.92001 0.93123 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.45 36.01 0.34 -1.19 16 2 C -0.05 -0.95 5.90 -105.48 -0.62 -1.57 16 3 C -0.16 -2.89 9.97 -41.41 -0.41 -3.30 16 4 C -0.32 -5.78 10.92 29.18 0.32 -5.46 16 5 S 0.35 7.25 15.23 -107.50 -1.64 5.62 16 6 C -0.29 -6.08 6.23 -36.79 -0.23 -6.31 16 7 C 0.59 13.07 7.53 -12.90 -0.10 12.98 16 8 O -0.56 -12.74 13.88 5.19 0.07 -12.66 16 9 N -0.59 -12.28 2.48 -176.65 -0.44 -12.72 16 10 C 0.20 4.28 3.84 -5.20 -0.02 4.26 16 11 C -0.53 -13.32 7.52 -34.44 -0.26 -13.58 16 12 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 13 C 0.09 2.26 5.09 -17.82 -0.09 2.17 16 14 N -0.87 -23.77 13.96 55.43 0.77 -22.99 16 15 Si 0.85 18.29 26.80 -169.99 -4.56 13.74 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 19 C 0.12 2.11 5.20 -4.04 -0.02 2.09 16 20 C -0.13 -1.92 5.01 -26.73 -0.13 -2.06 16 21 C -0.09 -1.14 2.92 -90.62 -0.26 -1.41 16 22 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 23 C -0.15 -1.74 8.95 37.16 0.33 -1.41 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.50 6.24 -51.93 -0.32 1.18 16 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.15 2.31 8.06 -52.48 -0.42 1.89 16 29 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 30 H 0.03 0.64 3.94 -22.37 -0.09 0.56 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.08 1.37 6.53 -51.93 -0.34 1.03 16 33 H 0.08 1.45 7.25 -51.93 -0.38 1.07 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -27.51 342.32 -7.94 -35.45 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.50 Total: 4.41 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.82 Total: -16.00 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.34 Total: -35.71 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.56 Total: 13.74 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -1.64 Total: 5.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.51 -7.94 -35.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264058284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.334 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds