Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37465 * 123.35123 * 2 1 4 4 C 1.33818 * 115.10059 * 179.77196 * 3 2 1 5 5 S 1.70620 * 110.95575 * 0.48707 * 4 3 2 6 6 C 1.36653 * 123.34944 * 180.30431 * 2 1 3 7 7 C 1.46578 * 125.46198 * 359.97438 * 6 2 1 8 8 O 1.21700 * 120.00156 * 351.59618 * 7 6 2 9 9 N 1.34781 * 120.00137 * 171.59228 * 7 6 2 10 10 C 1.46500 * 119.99986 * 2.11595 * 9 7 6 11 11 C 1.50694 * 109.47433 * 82.43163 * 10 9 7 12 12 H 1.08003 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00324 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00319 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99451 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47196 * 90.00327 * 15 13 11 17 17 H 1.48509 * 109.46549 * 209.99973 * 15 13 11 18 18 H 1.48498 * 109.47440 * 329.99562 * 15 13 11 19 19 C 1.46499 * 119.99707 * 182.11083 * 9 7 6 20 20 C 1.52998 * 109.47169 * 94.94686 * 19 9 7 21 21 C 1.53000 * 109.46954 * 179.97438 * 20 19 9 22 22 C 1.52998 * 109.46834 * 174.99882 * 21 20 19 23 23 C 1.52999 * 109.46861 * 294.99415 * 21 20 19 24 24 H 1.09001 * 109.46661 * 269.69714 * 1 2 3 25 25 H 1.08996 * 109.47193 * 29.69961 * 1 2 3 26 26 H 1.09007 * 109.47256 * 149.70516 * 1 2 3 27 27 H 1.08002 * 122.45202 * 0.02562 * 3 2 1 28 28 H 1.08004 * 124.52224 * 180.22143 * 4 3 2 29 29 H 1.08997 * 109.47197 * 202.43605 * 10 9 7 30 30 H 1.09006 * 109.46714 * 322.43486 * 10 9 7 31 31 H 0.96996 * 120.00315 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.46704 * 214.94496 * 19 9 7 33 33 H 1.08997 * 109.47217 * 334.94137 * 19 9 7 34 34 H 1.08997 * 109.46688 * 299.99435 * 20 19 9 35 35 H 1.09000 * 109.47337 * 59.99111 * 20 19 9 36 36 H 1.08997 * 109.47446 * 54.99752 * 21 20 19 37 37 H 1.09002 * 109.47662 * 59.99645 * 22 21 20 38 38 H 1.09004 * 109.47243 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47357 * 299.99720 * 22 21 20 40 40 H 1.08998 * 109.47395 * 60.00610 * 23 21 20 41 41 H 1.09004 * 109.46951 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.47074 * 300.00011 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9562 0.0048 5 16 3.9624 -0.7082 -0.0038 6 6 2.2583 -1.1415 -0.0061 7 6 1.7285 -2.5082 -0.0128 8 8 0.5364 -2.6995 0.1407 9 7 2.5614 -3.5530 -0.1891 10 6 4.0021 -3.3260 -0.3276 11 6 4.6210 -3.1781 1.0384 12 1 4.0031 -3.2467 1.9216 13 6 5.9763 -2.9561 1.1610 14 7 6.5165 -2.8275 2.3531 15 14 7.0451 -2.8381 -0.3665 16 1 7.1066 -1.4254 -0.8197 17 1 8.4150 -3.3165 -0.0501 18 1 6.4637 -3.6788 -1.4437 19 6 2.0261 -4.9156 -0.2420 20 6 1.7994 -5.3182 -1.7006 21 6 1.2409 -6.7415 -1.7559 22 6 0.8974 -7.0986 -3.2034 23 6 2.2886 -7.7214 -1.2238 24 1 -0.3633 -0.0054 1.0277 25 1 -0.3633 0.8926 -0.5091 26 1 -0.3634 -0.8874 -0.5184 27 1 1.8201 2.1334 0.0004 28 1 4.3205 1.7490 0.0090 29 1 4.4556 -4.1731 -0.8421 30 1 4.1728 -2.4168 -0.9042 31 1 7.4700 -2.6717 2.4393 32 1 2.7359 -5.6029 0.2185 33 1 1.0797 -4.9554 0.2972 34 1 1.0897 -4.6309 -2.1610 35 1 2.7458 -5.2783 -2.2399 36 1 0.3416 -6.8031 -1.1432 37 1 1.7967 -7.0371 -3.8162 38 1 0.4999 -8.1128 -3.2430 39 1 0.1510 -6.4005 -3.5826 40 1 2.5334 -7.4671 -0.1926 41 1 1.8909 -8.7355 -1.2636 42 1 3.1880 -7.6599 -1.8366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264058284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -34.079264 kcal Electronic energy + Delta-G solvation = -22395.855012 eV Core-core repulsion = 19273.518083 eV Total energy + Delta-G solvation = -3122.336929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99059 -38.87845 -37.66815 -36.50947 -34.58831 -31.98534 -31.04400 -29.76091 -28.40900 -27.97091 -24.87921 -24.71098 -23.84537 -21.34350 -20.83182 -19.22139 -19.11381 -18.83002 -17.04142 -16.84048 -16.53112 -16.00709 -15.86330 -15.67233 -14.89407 -14.73668 -14.63293 -14.45829 -14.34010 -13.99152 -13.83632 -13.67408 -13.17511 -13.09881 -13.00362 -12.90558 -12.72807 -12.65018 -12.30626 -12.15951 -12.09302 -11.83314 -11.69394 -11.56177 -11.42445 -10.93523 -10.88635 -10.75319 -9.74352 -9.40953 -9.06593 -8.34119 -6.35106 -0.22917 0.85388 1.35523 1.39362 1.40720 1.46801 1.56920 2.18836 2.28935 2.31204 3.00385 3.71339 3.93042 3.99043 4.07181 4.12601 4.30962 4.41762 4.49687 4.54281 4.55842 4.64572 4.71023 4.76360 4.81424 4.84690 4.85442 4.93522 5.04897 5.10879 5.14623 5.15638 5.20611 5.29614 5.33481 5.48383 5.51368 5.53496 5.67196 5.70197 6.12713 6.48772 6.62532 7.16038 7.25891 8.81287 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.007526 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.135333 B = 3719.339870 C = 5575.469401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.046 4.046 3 C -0.161 4.161 4 C -0.301 4.301 5 S 0.299 5.701 6 C -0.317 4.317 7 C 0.585 3.415 8 O -0.577 6.577 9 N -0.596 5.596 10 C 0.205 3.795 11 C -0.531 4.531 12 H 0.035 0.965 13 C 0.049 3.951 14 N -0.923 5.923 15 Si 0.894 3.106 16 H -0.245 1.245 17 H -0.277 1.277 18 H -0.236 1.236 19 C 0.116 3.884 20 C -0.118 4.118 21 C -0.091 4.091 22 C -0.141 4.141 23 C -0.149 4.149 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.178 0.822 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.272 0.728 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -0.383 -10.750 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.192 4.192 4 C -0.438 4.438 5 S 0.575 5.425 6 C -0.437 4.437 7 C 0.375 3.625 8 O -0.461 6.461 9 N -0.325 5.325 10 C 0.081 3.919 11 C -0.572 4.572 12 H 0.053 0.947 13 C -0.153 4.153 14 N -0.561 5.561 15 Si 0.716 3.284 16 H -0.169 1.169 17 H -0.202 1.202 18 H -0.159 1.159 19 C -0.006 4.006 20 C -0.156 4.156 21 C -0.110 4.110 22 C -0.198 4.198 23 C -0.206 4.206 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.177 0.823 28 H 0.196 0.804 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.727 -1.236 -10.591 11.664 hybrid contribution -0.368 1.016 0.253 1.109 sum -5.095 -0.221 -10.337 11.527 Atomic orbital electron populations 1.20549 0.88380 1.03255 1.02484 1.19734 0.98204 0.90774 0.97649 1.19900 0.92400 0.99395 1.07468 1.26662 1.01610 1.07758 1.07783 1.85282 1.02000 0.92877 1.62342 1.24527 0.99121 0.97141 1.22945 1.17225 0.85353 0.84059 0.75826 1.90637 1.15921 1.85937 1.53585 1.47838 1.07897 1.06609 1.70155 1.19941 0.77689 0.97534 0.96780 1.21257 0.93731 1.50437 0.91795 0.94681 1.25446 0.98356 0.93116 0.98395 1.69994 1.13095 1.48301 1.24711 0.86452 0.79322 0.81471 0.81203 1.16940 1.20206 1.15890 1.21584 0.99487 0.81427 0.98057 1.21923 1.01161 0.97233 0.95308 1.21036 0.98773 0.93053 0.98111 1.21788 1.01478 1.01757 0.94795 1.21900 0.98713 0.99169 1.00832 0.91405 0.89262 0.91658 0.82330 0.80424 0.92135 0.94032 0.91833 0.90159 0.91306 0.92964 0.91702 0.91277 0.92499 0.91332 0.92960 0.93271 0.91305 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 9.45 71.24 0.67 -2.13 16 2 C -0.05 -1.71 5.90 -20.42 -0.12 -1.83 16 3 C -0.16 -5.16 9.97 21.08 0.21 -4.95 16 4 C -0.30 -10.05 10.92 66.81 0.73 -9.32 16 5 S 0.30 12.14 15.23 -56.49 -0.86 11.28 16 6 C -0.32 -13.43 6.23 24.08 0.15 -13.28 16 7 C 0.58 26.30 7.53 86.42 0.65 26.95 16 8 O -0.58 -26.99 13.88 -4.35 -0.06 -27.05 16 9 N -0.60 -25.33 2.48 -831.00 -2.06 -27.39 16 10 C 0.20 8.90 3.84 85.63 0.33 9.23 16 11 C -0.53 -27.37 7.52 25.60 0.19 -27.18 16 12 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 13 C 0.05 2.52 5.09 84.66 0.43 2.96 16 14 N -0.92 -51.99 13.96 21.45 0.30 -51.69 16 15 Si 0.89 36.95 26.80 68.60 1.84 38.79 16 16 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.24 -8.84 6.54 99.48 0.65 -8.19 16 19 C 0.12 4.21 5.20 86.38 0.45 4.66 16 20 C -0.12 -3.46 5.01 30.59 0.15 -3.31 16 21 C -0.09 -2.12 2.92 -10.79 -0.03 -2.15 16 22 C -0.14 -2.73 9.19 71.98 0.66 -2.06 16 23 C -0.15 -3.27 8.95 71.98 0.64 -2.62 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.33 6.24 -2.38 -0.01 2.31 16 27 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 28 H 0.18 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.06 2.48 7.07 -2.39 -0.02 2.46 16 30 H 0.04 1.79 3.94 -21.18 -0.08 1.71 16 31 H 0.27 14.31 8.31 -92.71 -0.77 13.53 16 32 H 0.08 2.85 6.53 -2.39 -0.02 2.84 16 33 H 0.07 2.61 7.25 -2.39 -0.02 2.59 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.05 1.19 6.56 -2.39 -0.02 1.17 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -61.53 342.32 5.14 -56.39 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.87 Total: 24.71 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 5.12 Total: -25.05 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.76 Total: -79.08 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.84 Total: 38.79 kcal Atomic # 16 Polarization: 12.14 SS G_CDS: -0.86 Total: 11.28 kcal Total: -61.53 5.14 -56.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264058284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.312 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds