Wall clock time and date at job start Tue Mar 31 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37466 * 123.35091 * 2 1 4 4 C 1.33825 * 115.09873 * 179.76731 * 3 2 1 5 5 S 1.70613 * 110.95390 * 0.48736 * 4 3 2 6 6 C 1.36644 * 123.34748 * 180.29639 * 2 1 3 7 7 C 1.46576 * 125.45997 * 359.97438 * 6 2 1 8 8 O 1.21695 * 120.00525 * 351.38624 * 7 6 2 9 9 N 1.34779 * 119.99935 * 171.37748 * 7 6 2 10 10 C 1.46504 * 120.00088 * 2.29493 * 9 7 6 11 11 C 1.50697 * 109.46989 * 82.32254 * 10 9 7 12 12 H 1.07999 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00277 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47116 * 89.99493 * 15 13 11 17 17 H 1.48494 * 109.47266 * 209.99439 * 15 13 11 18 18 H 1.48499 * 109.46872 * 329.99827 * 15 13 11 19 19 C 1.46498 * 120.00369 * 182.28963 * 9 7 6 20 20 C 1.53001 * 109.47301 * 93.91653 * 19 9 7 21 21 C 1.52998 * 109.47068 * 64.95491 * 20 19 9 22 22 C 1.52999 * 109.47427 * 184.95792 * 20 19 9 23 23 C 1.53006 * 109.47089 * 304.96197 * 20 19 9 24 24 H 1.08996 * 109.46771 * 269.71086 * 1 2 3 25 25 H 1.08999 * 109.46766 * 29.70394 * 1 2 3 26 26 H 1.08988 * 109.47303 * 149.70604 * 1 2 3 27 27 H 1.07997 * 122.45334 * 0.02562 * 3 2 1 28 28 H 1.07997 * 124.52294 * 180.21297 * 4 3 2 29 29 H 1.09000 * 109.46995 * 202.32119 * 10 9 7 30 30 H 1.09004 * 109.47118 * 322.32264 * 10 9 7 31 31 H 0.96999 * 120.00413 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47751 * 213.91894 * 19 9 7 33 33 H 1.09003 * 109.46827 * 333.91885 * 19 9 7 34 34 H 1.09002 * 109.46853 * 60.00057 * 21 20 19 35 35 H 1.08992 * 109.47237 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.47505 * 300.00633 * 21 20 19 37 37 H 1.08996 * 109.47009 * 60.00195 * 22 20 19 38 38 H 1.09002 * 109.47148 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46904 * 300.00194 * 22 20 19 40 40 H 1.09001 * 109.47153 * 65.04473 * 23 20 19 41 41 H 1.08998 * 109.47016 * 185.04769 * 23 20 19 42 42 H 1.09010 * 109.46640 * 305.04862 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5872 0.9562 0.0049 5 16 3.9624 -0.7081 -0.0036 6 6 2.2582 -1.1414 -0.0059 7 6 1.7283 -2.5081 -0.0124 8 8 0.5369 -2.6996 0.1449 9 7 2.5606 -3.5527 -0.1929 10 6 4.0013 -3.3259 -0.3322 11 6 4.6212 -3.1799 1.0336 12 1 4.0038 -3.2487 1.9170 13 6 5.9764 -2.9574 1.1553 14 7 6.7282 -2.8731 0.0795 15 14 6.7448 -2.7757 2.8482 16 1 7.1709 -4.1090 3.3442 17 1 7.9255 -1.8791 2.7623 18 1 5.7489 -2.1945 3.7840 19 6 2.0248 -4.9150 -0.2496 20 6 1.7723 -5.3034 -1.7078 21 6 3.1042 -5.3598 -2.4585 22 6 1.0986 -6.6761 -1.7606 23 6 0.8616 -4.2627 -2.3625 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 0.8926 -0.5092 26 1 -0.3633 -0.8872 -0.5183 27 1 1.8201 2.1334 0.0004 28 1 4.3206 1.7489 0.0089 29 1 4.4541 -4.1726 -0.8481 30 1 4.1719 -2.4161 -0.9079 31 1 7.6817 -2.7170 0.1651 32 1 2.7427 -5.6065 0.1915 33 1 1.0881 -4.9603 0.3059 34 1 3.7531 -6.1011 -1.9921 35 1 2.9243 -5.6360 -3.4974 36 1 3.5842 -4.3819 -2.4209 37 1 0.1497 -6.6359 -1.2258 38 1 0.9191 -6.9530 -2.7995 39 1 1.7474 -7.4175 -1.2942 40 1 1.3779 -3.3038 -2.4055 41 1 0.6090 -4.5851 -3.3726 42 1 -0.0510 -4.1580 -1.7755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264326596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:15 Heat of formation + Delta-G solvation = -17.508192 kcal Electronic energy + Delta-G solvation = -23113.111014 eV Core-core repulsion = 19991.492661 eV Total energy + Delta-G solvation = -3121.618353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.53412 -37.53519 -36.22404 -34.50478 -32.52693 -30.16215 -28.22052 -27.68342 -26.94796 -26.72407 -25.18487 -23.18262 -22.48227 -20.19987 -18.35326 -17.46745 -17.17278 -16.75379 -15.31304 -15.09722 -14.89902 -14.47311 -14.29497 -13.85606 -13.64052 -13.19424 -12.80931 -12.64885 -12.52361 -12.33982 -12.19678 -11.98535 -11.85261 -11.50350 -11.40776 -11.25800 -11.16969 -11.08870 -11.03251 -10.77002 -10.57210 -10.43057 -10.30399 -10.15211 -9.81996 -9.12718 -9.02553 -8.71414 -8.03520 -7.72232 -7.35797 -6.35756 -4.37881 1.42214 2.62278 3.04751 3.13439 3.16678 3.22648 3.27621 3.93447 4.03154 4.23463 4.98196 5.18183 5.18543 5.32812 5.53096 5.58392 5.85797 5.87890 5.89649 5.93135 6.04024 6.10749 6.12977 6.19300 6.21222 6.24018 6.29544 6.38665 6.46345 6.53579 6.54724 6.58933 6.73999 6.76611 6.80744 6.96723 7.12323 7.19667 7.45833 7.61232 7.80675 8.26623 8.63557 9.03344 9.22761 10.67975 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.008828 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.932183 B = 3170.988508 C = 4909.692325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.054 4.054 3 C -0.166 4.166 4 C -0.334 4.334 5 S 0.392 5.608 6 C -0.295 4.295 7 C 0.593 3.407 8 O -0.561 6.561 9 N -0.593 5.593 10 C 0.222 3.778 11 C -0.536 4.536 12 H 0.068 0.932 13 C 0.076 3.924 14 N -0.877 5.877 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.132 3.868 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.132 4.132 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.270 0.730 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.042 0.958 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 -0.145 -3.599 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.472 4.472 5 S 0.670 5.330 6 C -0.416 4.416 7 C 0.383 3.617 8 O -0.444 6.444 9 N -0.323 5.323 10 C 0.100 3.900 11 C -0.578 4.578 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.514 5.514 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.193 1.193 19 C 0.008 3.992 20 C -0.086 4.086 21 C -0.201 4.201 22 C -0.193 4.193 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.163 0.837 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.365 -0.963 -3.606 5.744 hybrid contribution -0.492 1.231 0.979 1.647 sum -4.857 0.267 -2.628 5.529 Atomic orbital electron populations 1.20495 0.90210 1.02203 1.01907 1.19170 0.96706 0.90862 1.00337 1.19510 0.92771 0.98230 1.09212 1.26635 1.00584 1.10170 1.09780 1.85992 0.99515 0.88472 1.59047 1.24575 0.99595 0.96944 1.20515 1.16914 0.85378 0.83313 0.76103 1.90646 1.15485 1.85530 1.52755 1.47935 1.09143 1.05245 1.69961 1.19806 0.74765 0.97696 0.97772 1.21540 0.93341 1.50210 0.92703 0.91405 1.24889 0.96732 0.94215 0.97176 1.69900 1.06475 1.46906 1.28101 0.86596 0.79163 0.78526 0.84158 1.20203 1.20695 1.19315 1.21373 0.99695 0.83262 0.94830 1.20956 0.95916 0.95323 0.96396 1.22015 0.96326 1.02874 0.98892 1.21782 1.00229 0.95993 1.01314 1.21803 0.99624 0.98425 0.99099 0.91893 0.93067 0.89957 0.86461 0.83668 0.92163 0.94269 0.92052 0.90688 0.90525 0.92673 0.93583 0.91422 0.92775 0.92912 0.92746 0.92989 0.93867 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.45 36.01 0.34 -1.19 16 2 C -0.05 -1.06 5.90 -105.48 -0.62 -1.68 16 3 C -0.17 -2.99 9.97 -41.41 -0.41 -3.41 16 4 C -0.33 -6.14 10.92 29.18 0.32 -5.82 16 5 S 0.39 8.14 15.88 -107.50 -1.71 6.43 16 6 C -0.29 -6.27 6.23 -36.80 -0.23 -6.50 16 7 C 0.59 12.86 6.01 -12.90 -0.08 12.79 16 8 O -0.56 -12.54 12.59 5.19 0.07 -12.47 16 9 N -0.59 -12.22 1.98 -176.64 -0.35 -12.58 16 10 C 0.22 4.92 3.57 -5.19 -0.02 4.90 16 11 C -0.54 -12.89 6.95 -34.44 -0.24 -13.13 16 12 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.08 1.83 5.02 -17.82 -0.09 1.74 16 14 N -0.88 -21.68 13.29 55.43 0.74 -20.95 16 15 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.13 2.36 4.59 -4.04 -0.02 2.35 16 20 C -0.08 -1.31 0.85 -154.51 -0.13 -1.44 16 21 C -0.14 -2.23 7.36 37.16 0.27 -1.96 16 22 C -0.14 -1.72 8.47 37.16 0.31 -1.41 16 23 C -0.13 -2.13 7.24 37.16 0.27 -1.87 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.52 6.24 -51.94 -0.32 1.19 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.06 1.36 5.90 -51.93 -0.31 1.06 16 30 H 0.04 0.92 4.50 -22.41 -0.10 0.82 16 31 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.08 1.41 7.28 -51.93 -0.38 1.03 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.19 5.73 -51.93 -0.30 0.89 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.94 6.85 -51.93 -0.36 0.59 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.05 7.41 -51.92 -0.38 0.67 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -25.51 336.52 -7.87 -33.38 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.34 Total: 3.39 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.32 Total: -16.63 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.39 Total: -33.52 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 8.14 SS G_CDS: -1.71 Total: 6.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.51 -7.87 -33.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264326596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.868 kcal (2) G-P(sol) polarization free energy of solvation -25.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds