Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37466 * 123.35091 * 2 1 4 4 C 1.33825 * 115.09873 * 179.76731 * 3 2 1 5 5 S 1.70613 * 110.95390 * 0.48736 * 4 3 2 6 6 C 1.36644 * 123.34748 * 180.29639 * 2 1 3 7 7 C 1.46576 * 125.45997 * 359.97438 * 6 2 1 8 8 O 1.21695 * 120.00525 * 351.38624 * 7 6 2 9 9 N 1.34779 * 119.99935 * 171.37748 * 7 6 2 10 10 C 1.46504 * 120.00088 * 2.29493 * 9 7 6 11 11 C 1.50697 * 109.46989 * 82.32254 * 10 9 7 12 12 H 1.07999 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00277 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47116 * 89.99493 * 15 13 11 17 17 H 1.48494 * 109.47266 * 209.99439 * 15 13 11 18 18 H 1.48499 * 109.46872 * 329.99827 * 15 13 11 19 19 C 1.46498 * 120.00369 * 182.28963 * 9 7 6 20 20 C 1.53001 * 109.47301 * 93.91653 * 19 9 7 21 21 C 1.52998 * 109.47068 * 64.95491 * 20 19 9 22 22 C 1.52999 * 109.47427 * 184.95792 * 20 19 9 23 23 C 1.53006 * 109.47089 * 304.96197 * 20 19 9 24 24 H 1.08996 * 109.46771 * 269.71086 * 1 2 3 25 25 H 1.08999 * 109.46766 * 29.70394 * 1 2 3 26 26 H 1.08988 * 109.47303 * 149.70604 * 1 2 3 27 27 H 1.07997 * 122.45334 * 0.02562 * 3 2 1 28 28 H 1.07997 * 124.52294 * 180.21297 * 4 3 2 29 29 H 1.09000 * 109.46995 * 202.32119 * 10 9 7 30 30 H 1.09004 * 109.47118 * 322.32264 * 10 9 7 31 31 H 0.96999 * 120.00413 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47751 * 213.91894 * 19 9 7 33 33 H 1.09003 * 109.46827 * 333.91885 * 19 9 7 34 34 H 1.09002 * 109.46853 * 60.00057 * 21 20 19 35 35 H 1.08992 * 109.47237 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.47505 * 300.00633 * 21 20 19 37 37 H 1.08996 * 109.47009 * 60.00195 * 22 20 19 38 38 H 1.09002 * 109.47148 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46904 * 300.00194 * 22 20 19 40 40 H 1.09001 * 109.47153 * 65.04473 * 23 20 19 41 41 H 1.08998 * 109.47016 * 185.04769 * 23 20 19 42 42 H 1.09010 * 109.46640 * 305.04862 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5872 0.9562 0.0049 5 16 3.9624 -0.7081 -0.0036 6 6 2.2582 -1.1414 -0.0059 7 6 1.7283 -2.5081 -0.0124 8 8 0.5369 -2.6996 0.1449 9 7 2.5606 -3.5527 -0.1929 10 6 4.0013 -3.3259 -0.3322 11 6 4.6212 -3.1799 1.0336 12 1 4.0038 -3.2487 1.9170 13 6 5.9764 -2.9574 1.1553 14 7 6.7282 -2.8731 0.0795 15 14 6.7448 -2.7757 2.8482 16 1 7.1709 -4.1090 3.3442 17 1 7.9255 -1.8791 2.7623 18 1 5.7489 -2.1945 3.7840 19 6 2.0248 -4.9150 -0.2496 20 6 1.7723 -5.3034 -1.7078 21 6 3.1042 -5.3598 -2.4585 22 6 1.0986 -6.6761 -1.7606 23 6 0.8616 -4.2627 -2.3625 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 0.8926 -0.5092 26 1 -0.3633 -0.8872 -0.5183 27 1 1.8201 2.1334 0.0004 28 1 4.3206 1.7489 0.0089 29 1 4.4541 -4.1726 -0.8481 30 1 4.1719 -2.4161 -0.9079 31 1 7.6817 -2.7170 0.1651 32 1 2.7427 -5.6065 0.1915 33 1 1.0881 -4.9603 0.3059 34 1 3.7531 -6.1011 -1.9921 35 1 2.9243 -5.6360 -3.4974 36 1 3.5842 -4.3819 -2.4209 37 1 0.1497 -6.6359 -1.2258 38 1 0.9191 -6.9530 -2.7995 39 1 1.7474 -7.4175 -1.2942 40 1 1.3779 -3.3038 -2.4055 41 1 0.6090 -4.5851 -3.3726 42 1 -0.0510 -4.1580 -1.7755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264326596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = -28.567392 kcal Electronic energy + Delta-G solvation = -23113.590577 eV Core-core repulsion = 19991.492661 eV Total energy + Delta-G solvation = -3122.097916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11742 -39.00033 -37.69989 -36.16407 -34.29432 -31.63133 -29.78408 -29.30322 -28.11752 -28.07968 -26.67513 -24.92824 -23.98480 -21.72362 -19.70696 -19.00718 -18.88899 -18.50506 -16.87762 -16.72665 -16.51382 -16.08871 -15.73256 -15.21629 -15.03707 -14.55233 -14.44656 -14.19744 -14.13040 -13.86992 -13.70113 -13.33401 -13.09531 -12.99137 -12.86208 -12.80745 -12.69851 -12.50687 -12.48846 -12.30134 -12.04104 -11.96776 -11.76002 -11.53084 -11.47287 -10.79019 -10.64383 -10.48605 -9.63144 -9.31722 -8.96365 -8.20276 -6.27292 -0.13171 1.04053 1.38393 1.44631 1.51440 1.54434 1.65029 2.30076 2.40497 2.48848 3.10954 3.80975 3.91508 4.03641 4.07916 4.18076 4.47282 4.56196 4.59430 4.65787 4.74926 4.77962 4.81981 4.85453 4.88430 4.93833 4.95025 5.07275 5.07946 5.15869 5.18576 5.23481 5.26904 5.33396 5.48605 5.53452 5.60511 5.67849 5.75602 5.88741 5.99352 6.53852 6.79085 7.30596 7.41725 8.82693 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.008828 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.932183 B = 3170.988508 C = 4909.692325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.318 4.318 5 S 0.339 5.661 6 C -0.323 4.323 7 C 0.586 3.414 8 O -0.576 6.576 9 N -0.593 5.593 10 C 0.235 3.765 11 C -0.541 4.541 12 H 0.048 0.952 13 C 0.050 3.950 14 N -0.896 5.896 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.127 3.873 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.123 4.123 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.153 0.847 28 H 0.173 0.827 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.272 0.728 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.065 0.935 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 0.516 -3.965 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.456 4.456 5 S 0.615 5.385 6 C -0.443 4.443 7 C 0.377 3.623 8 O -0.460 6.460 9 N -0.322 5.322 10 C 0.112 3.888 11 C -0.582 4.582 12 H 0.066 0.934 13 C -0.154 4.154 14 N -0.533 5.533 15 Si 0.757 3.243 16 H -0.200 1.200 17 H -0.200 1.200 18 H -0.201 1.201 19 C 0.004 3.996 20 C -0.081 4.081 21 C -0.196 4.196 22 C -0.187 4.187 23 C -0.181 4.181 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.170 0.830 28 H 0.190 0.810 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.925 -0.332 -3.972 6.336 hybrid contribution -0.397 1.130 1.077 1.610 sum -5.322 0.798 -2.895 6.110 Atomic orbital electron populations 1.20507 0.88609 1.02965 1.02349 1.19668 0.98048 0.90825 0.98513 1.19845 0.92480 0.99218 1.07954 1.26805 1.01493 1.09001 1.08293 1.86047 1.00317 0.91034 1.61095 1.24704 0.99762 0.97367 1.22510 1.17097 0.85349 0.83858 0.76003 1.90620 1.15828 1.85858 1.53732 1.47955 1.08547 1.06141 1.69581 1.19567 0.75384 0.97165 0.96710 1.21489 0.93449 1.50599 0.92694 0.93399 1.25283 0.96894 0.94007 0.99209 1.69949 1.06650 1.47617 1.29120 0.85951 0.78464 0.78486 0.81418 1.19983 1.19978 1.20051 1.21551 0.99076 0.82083 0.96840 1.20931 0.96117 0.96803 0.94289 1.21943 0.96029 1.01372 1.00228 1.21731 1.00147 0.94060 1.02720 1.21706 0.98702 0.97386 1.00258 0.91419 0.89816 0.91693 0.82980 0.80986 0.92998 0.94696 0.91879 0.90764 0.91226 0.92571 0.91457 0.94090 0.92506 0.91073 0.91843 0.95662 0.91564 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 9.45 71.24 0.67 -2.12 16 2 C -0.05 -2.01 5.90 -20.42 -0.12 -2.13 16 3 C -0.16 -5.48 9.97 21.08 0.21 -5.27 16 4 C -0.32 -11.07 10.92 66.82 0.73 -10.34 16 5 S 0.34 14.15 15.88 -56.49 -0.90 13.25 16 6 C -0.32 -13.82 6.23 24.07 0.15 -13.67 16 7 C 0.59 26.07 6.01 86.42 0.52 26.59 16 8 O -0.58 -26.27 12.59 -4.33 -0.05 -26.33 16 9 N -0.59 -25.21 1.98 -830.98 -1.65 -26.85 16 10 C 0.23 10.73 3.57 85.63 0.31 11.03 16 11 C -0.54 -26.67 6.95 25.60 0.18 -26.49 16 12 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 13 C 0.05 2.43 5.02 84.66 0.43 2.86 16 14 N -0.90 -44.69 13.29 21.45 0.28 -44.41 16 15 Si 0.93 39.77 29.54 68.60 2.03 41.80 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 C 0.13 4.64 4.59 86.38 0.40 5.04 16 20 C -0.08 -2.44 0.85 -52.18 -0.04 -2.48 16 21 C -0.14 -4.22 7.36 71.98 0.53 -3.69 16 22 C -0.13 -3.03 8.47 71.98 0.61 -2.42 16 23 C -0.12 -3.94 7.24 71.98 0.52 -3.42 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.36 6.24 -2.39 -0.01 2.34 16 27 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.17 4.99 8.06 -2.91 -0.02 4.96 16 29 H 0.05 2.44 5.90 -2.39 -0.01 2.42 16 30 H 0.04 1.71 4.50 -21.15 -0.10 1.61 16 31 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 32 H 0.07 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.07 2.61 7.28 -2.39 -0.02 2.60 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.46 5.73 -2.39 -0.01 1.45 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.67 7.41 -2.38 -0.02 1.65 16 Total: -1.00 -54.88 336.52 5.71 -49.17 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.92 Total: 19.89 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 5.08 Total: -26.52 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.36 Total: -71.26 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 14.15 SS G_CDS: -0.90 Total: 13.25 kcal Total: -54.88 5.71 -49.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264326596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.604 kcal (2) G-P(sol) polarization free energy of solvation -54.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds