Wall clock time and date at job start Tue Mar 31 2020 08:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.09003 * 109.46999 * 305.43111 * 3 2 1 5 5 O 1.42899 * 109.47551 * 65.43198 * 3 2 1 6 6 C 1.35955 * 116.99929 * 263.73049 * 5 3 2 7 7 C 1.38658 * 120.06407 * 355.91909 * 6 5 3 8 8 C 1.38180 * 119.96784 * 179.72325 * 7 6 5 9 9 C 1.38266 * 120.09715 * 0.55654 * 8 7 6 10 10 C 1.38254 * 120.12305 * 359.72266 * 9 8 7 11 11 C 1.38335 * 120.03097 * 359.97438 * 10 9 8 12 12 F 1.35098 * 120.04747 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46926 * 185.43510 * 3 2 1 14 14 O 1.21296 * 119.99752 * 250.39370 * 13 3 2 15 15 N 1.34773 * 120.00206 * 70.39155 * 13 3 2 16 16 C 1.37096 * 120.00203 * 185.71100 * 15 13 3 17 17 H 1.08008 * 119.99952 * 317.29919 * 16 15 13 18 18 C 1.38949 * 120.00366 * 137.29929 * 16 15 13 19 19 N 1.31409 * 119.99569 * 352.03120 * 18 16 15 20 20 Si 1.86796 * 120.00113 * 172.03794 * 18 16 15 21 21 H 1.48499 * 109.47366 * 90.00080 * 20 18 16 22 22 H 1.48509 * 109.46995 * 209.99777 * 20 18 16 23 23 H 1.48495 * 109.47161 * 329.99662 * 20 18 16 24 24 C 1.46498 * 119.99906 * 5.71237 * 15 13 3 25 25 C 1.52998 * 109.47120 * 90.11653 * 24 15 13 26 26 H 1.09005 * 109.47109 * 60.00214 * 1 2 3 27 27 H 1.09000 * 109.47837 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 300.00089 * 1 2 3 29 29 H 1.08996 * 109.46999 * 119.99815 * 2 1 3 30 30 H 1.09000 * 109.47046 * 239.99564 * 2 1 3 31 31 H 1.08004 * 120.01207 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.95199 * 180.27599 * 8 7 6 33 33 H 1.07999 * 119.93773 * 179.74384 * 9 8 7 34 34 H 1.07996 * 119.98675 * 179.97438 * 10 9 8 35 35 H 0.97006 * 120.00198 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46840 * 210.11498 * 24 15 13 37 37 H 1.08999 * 109.47215 * 330.11408 * 24 15 13 38 38 H 1.08999 * 109.47277 * 59.99794 * 25 24 15 39 39 H 1.08999 * 109.47107 * 179.97438 * 25 24 15 40 40 H 1.09001 * 109.47138 * 299.99663 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5993 1.9836 -0.8374 5 8 1.6706 2.0784 1.2253 6 6 0.5375 2.8295 1.2137 7 6 -0.1568 3.0212 0.0289 8 6 -1.3114 3.7802 0.0205 9 6 -1.7694 4.3587 1.1899 10 6 -1.0770 4.1750 2.3723 11 6 0.0760 3.4109 2.3879 12 9 0.7526 3.2307 3.5433 13 6 3.5409 1.4446 -0.1346 14 8 4.2338 1.7665 0.8075 15 7 4.1134 1.0888 -1.3016 16 6 5.4769 0.9773 -1.3905 17 1 6.1107 1.7214 -0.9308 18 6 6.0436 -0.0929 -2.0717 19 7 5.2844 -1.0784 -2.4951 20 14 7.8847 -0.1309 -2.3856 21 1 8.5657 -0.8114 -1.2550 22 1 8.1570 -0.8699 -3.6446 23 1 8.3949 1.2584 -2.5069 24 6 3.2786 0.8211 -2.4754 25 6 3.0792 2.1161 -3.2654 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.2025 2.5740 -0.8862 32 1 -1.8545 3.9257 -0.9017 33 1 -2.6699 4.9549 1.1796 34 1 -1.4365 4.6282 3.2843 35 1 5.6800 -1.8258 -2.9704 36 1 3.7683 0.0811 -3.1083 37 1 2.3099 0.4394 -2.1529 38 1 4.0479 2.4978 -3.5879 39 1 2.4585 1.9169 -4.1390 40 1 2.5895 2.8561 -2.6324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267167361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:42 Heat of formation + Delta-G solvation = -80.687023 kcal Electronic energy + Delta-G solvation = -24733.000645 eV Core-core repulsion = 21042.429476 eV Total energy + Delta-G solvation = -3690.571169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.58510 -40.37305 -38.61332 -37.10599 -35.02099 -33.46004 -31.87217 -30.68948 -29.88627 -29.52485 -27.42198 -24.75137 -23.28387 -22.51059 -22.39441 -21.09725 -19.29719 -18.54857 -16.90154 -16.77862 -16.44897 -16.00327 -15.81740 -15.13782 -15.02321 -14.67881 -14.46882 -14.21387 -13.88545 -13.52792 -13.20946 -12.92236 -12.75485 -12.70839 -12.18171 -12.15616 -11.82937 -11.76298 -11.60321 -11.50693 -11.32567 -11.10213 -10.91593 -10.67656 -10.57809 -10.33918 -10.21757 -10.01077 -8.99129 -8.93618 -8.48643 -7.99764 -7.47590 -6.32839 -4.11858 1.11097 1.28833 3.12728 3.16963 3.24268 3.30916 3.57485 3.72649 4.13542 4.31572 4.66682 4.75016 4.84443 4.94541 4.99847 5.18177 5.19573 5.26488 5.37073 5.49227 5.55025 5.72613 5.82648 5.89947 5.97768 6.05202 6.13684 6.16375 6.18260 6.21193 6.27035 6.35645 6.38315 6.58560 6.69718 6.84643 7.24553 7.50096 7.55585 8.24560 8.46830 9.11114 9.29488 9.89987 10.68346 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004461 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.400138 B = 6275.507225 C = 6628.791315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.067 3.933 4 H 0.089 0.911 5 O -0.273 6.273 6 C 0.113 3.887 7 C -0.191 4.191 8 C -0.088 4.088 9 C -0.141 4.141 10 C -0.117 4.117 11 C 0.061 3.939 12 F -0.132 7.132 13 C 0.465 3.535 14 O -0.556 6.556 15 N -0.436 5.436 16 C -0.302 4.302 17 H 0.088 0.912 18 C 0.038 3.962 19 N -0.880 5.880 20 Si 0.925 3.075 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.079 3.921 25 C -0.164 4.164 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 5.434 -0.316 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.007 3.993 4 H 0.107 0.893 5 O -0.184 6.184 6 C 0.065 3.935 7 C -0.210 4.210 8 C -0.106 4.106 9 C -0.160 4.160 10 C -0.136 4.136 11 C 0.041 3.959 12 F -0.111 7.111 13 C 0.251 3.749 14 O -0.437 6.437 15 N -0.158 5.158 16 C -0.430 4.430 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.518 5.518 20 Si 0.752 3.248 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.044 4.044 25 C -0.222 4.222 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.458 5.359 0.250 15.422 hybrid contribution 0.829 -0.182 -0.276 0.892 sum -13.630 5.178 -0.026 14.580 Atomic orbital electron populations 1.21900 0.95398 1.02060 1.01626 1.22054 0.96007 0.94785 1.05028 1.22660 0.96709 0.94196 0.85693 0.89310 1.86333 1.37035 1.60081 1.34998 1.19223 0.88159 0.92868 0.93222 1.21304 0.97995 1.04344 0.97311 1.20971 0.95260 0.95868 0.98480 1.20840 1.00975 1.02271 0.91888 1.20971 0.93742 0.98854 1.00054 1.17028 0.94418 1.03883 0.80565 1.91509 1.79303 1.94061 1.46179 1.20056 0.87212 0.83534 0.84051 1.90571 1.63793 1.50629 1.38721 1.43305 1.06240 1.60481 1.05728 1.19413 0.80423 1.08046 1.35069 0.89390 1.25475 1.00016 0.93929 0.97089 1.69674 1.35733 1.08510 1.37906 0.85950 0.82503 0.78607 0.77765 1.20191 1.20821 1.19396 1.21960 0.94469 0.97744 0.90255 1.22198 1.01632 0.98978 0.99435 0.92601 0.92137 0.92751 0.90385 0.88331 0.84084 0.85251 0.85188 0.84401 0.92108 0.85920 0.92961 0.92121 0.92962 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.55 37.16 0.32 -1.74 16 2 C -0.14 -2.45 5.23 -26.73 -0.14 -2.59 16 3 C 0.07 1.31 1.72 -27.88 -0.05 1.27 16 4 H 0.09 1.52 3.91 -51.93 -0.20 1.31 16 5 O -0.27 -5.62 9.06 -39.29 -0.36 -5.98 16 6 C 0.11 1.89 5.33 -39.18 -0.21 1.69 16 7 C -0.19 -2.56 7.46 -39.45 -0.29 -2.86 16 8 C -0.09 -0.93 10.04 -39.59 -0.40 -1.32 16 9 C -0.14 -1.42 10.04 -39.57 -0.40 -1.81 16 10 C -0.12 -1.39 10.02 -39.54 -0.40 -1.79 16 11 C 0.06 0.96 7.31 -39.30 -0.29 0.68 16 12 F -0.13 -2.35 17.11 2.25 0.04 -2.31 16 13 C 0.47 11.70 6.96 -10.99 -0.08 11.62 16 14 O -0.56 -16.45 16.44 -14.15 -0.23 -16.68 16 15 N -0.44 -10.85 2.50 -114.81 -0.29 -11.14 16 16 C -0.30 -8.25 8.90 -14.93 -0.13 -8.38 16 17 H 0.09 2.53 7.75 -52.48 -0.41 2.13 16 18 C 0.04 0.99 5.23 -17.47 -0.09 0.90 16 19 N -0.88 -22.75 11.04 55.50 0.61 -22.13 16 20 Si 0.93 20.48 29.56 -169.99 -5.02 15.46 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.08 1.64 5.12 -4.04 -0.02 1.62 16 25 C -0.16 -2.87 10.17 37.16 0.38 -2.49 16 26 H 0.05 0.65 7.15 -51.93 -0.37 0.28 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.76 6.47 -51.93 -0.34 0.43 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.10 1.75 5.82 -51.93 -0.30 1.45 16 31 H 0.14 1.78 4.83 -52.48 -0.25 1.52 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.12 2.82 5.37 -51.93 -0.28 2.54 16 37 H 0.05 0.95 4.41 -51.93 -0.23 0.72 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.61 7.52 -51.93 -0.39 0.22 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -31.95 327.41 -6.98 -38.92 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.87 Total: 4.14 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.79 Total: -5.20 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.33 Total: -33.28 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.59 Total: -22.66 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.95 -6.98 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267167361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.765 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds