Wall clock time and date at job start Tue Mar 31 2020 08:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 H 1.09003 * 109.46999 * 305.43111 * 3 2 1 5 5 O 1.42899 * 109.47551 * 65.43198 * 3 2 1 6 6 C 1.35955 * 116.99929 * 263.73049 * 5 3 2 7 7 C 1.38658 * 120.06407 * 355.91909 * 6 5 3 8 8 C 1.38180 * 119.96784 * 179.72325 * 7 6 5 9 9 C 1.38266 * 120.09715 * 0.55654 * 8 7 6 10 10 C 1.38254 * 120.12305 * 359.72266 * 9 8 7 11 11 C 1.38335 * 120.03097 * 359.97438 * 10 9 8 12 12 F 1.35098 * 120.04747 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46926 * 185.43510 * 3 2 1 14 14 O 1.21296 * 119.99752 * 250.39370 * 13 3 2 15 15 N 1.34773 * 120.00206 * 70.39155 * 13 3 2 16 16 C 1.37096 * 120.00203 * 185.71100 * 15 13 3 17 17 H 1.08008 * 119.99952 * 317.29919 * 16 15 13 18 18 C 1.38949 * 120.00366 * 137.29929 * 16 15 13 19 19 N 1.31409 * 119.99569 * 352.03120 * 18 16 15 20 20 Si 1.86796 * 120.00113 * 172.03794 * 18 16 15 21 21 H 1.48499 * 109.47366 * 90.00080 * 20 18 16 22 22 H 1.48509 * 109.46995 * 209.99777 * 20 18 16 23 23 H 1.48495 * 109.47161 * 329.99662 * 20 18 16 24 24 C 1.46498 * 119.99906 * 5.71237 * 15 13 3 25 25 C 1.52998 * 109.47120 * 90.11653 * 24 15 13 26 26 H 1.09005 * 109.47109 * 60.00214 * 1 2 3 27 27 H 1.09000 * 109.47837 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 300.00089 * 1 2 3 29 29 H 1.08996 * 109.46999 * 119.99815 * 2 1 3 30 30 H 1.09000 * 109.47046 * 239.99564 * 2 1 3 31 31 H 1.08004 * 120.01207 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.95199 * 180.27599 * 8 7 6 33 33 H 1.07999 * 119.93773 * 179.74384 * 9 8 7 34 34 H 1.07996 * 119.98675 * 179.97438 * 10 9 8 35 35 H 0.97006 * 120.00198 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46840 * 210.11498 * 24 15 13 37 37 H 1.08999 * 109.47215 * 330.11408 * 24 15 13 38 38 H 1.08999 * 109.47277 * 59.99794 * 25 24 15 39 39 H 1.08999 * 109.47107 * 179.97438 * 25 24 15 40 40 H 1.09001 * 109.47138 * 299.99663 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5993 1.9836 -0.8374 5 8 1.6706 2.0784 1.2253 6 6 0.5375 2.8295 1.2137 7 6 -0.1568 3.0212 0.0289 8 6 -1.3114 3.7802 0.0205 9 6 -1.7694 4.3587 1.1899 10 6 -1.0770 4.1750 2.3723 11 6 0.0760 3.4109 2.3879 12 9 0.7526 3.2307 3.5433 13 6 3.5409 1.4446 -0.1346 14 8 4.2338 1.7665 0.8075 15 7 4.1134 1.0888 -1.3016 16 6 5.4769 0.9773 -1.3905 17 1 6.1107 1.7214 -0.9308 18 6 6.0436 -0.0929 -2.0717 19 7 5.2844 -1.0784 -2.4951 20 14 7.8847 -0.1309 -2.3856 21 1 8.5657 -0.8114 -1.2550 22 1 8.1570 -0.8699 -3.6446 23 1 8.3949 1.2584 -2.5069 24 6 3.2786 0.8211 -2.4754 25 6 3.0792 2.1161 -3.2654 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.2025 2.5740 -0.8862 32 1 -1.8545 3.9257 -0.9017 33 1 -2.6699 4.9549 1.1796 34 1 -1.4365 4.6282 3.2843 35 1 5.6800 -1.8258 -2.9704 36 1 3.7683 0.0811 -3.1083 37 1 2.3099 0.4394 -2.1529 38 1 4.0479 2.4978 -3.5879 39 1 2.4585 1.9169 -4.1390 40 1 2.5895 2.8561 -2.6324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267167361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:41 Heat of formation + Delta-G solvation = -99.383803 kcal Electronic energy + Delta-G solvation = -24733.811399 eV Core-core repulsion = 21042.429476 eV Total energy + Delta-G solvation = -3691.381922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.81652 -41.75768 -40.17913 -38.38009 -36.97770 -34.92576 -33.71036 -31.65525 -31.22270 -30.94977 -28.91051 -26.57423 -24.40926 -24.08180 -23.43554 -22.52924 -20.95080 -19.81038 -18.79442 -17.98602 -17.85942 -17.45160 -17.25112 -16.77072 -16.35641 -16.14774 -15.75875 -15.60401 -15.41668 -14.86373 -14.77588 -14.46138 -14.10201 -13.85746 -13.70378 -13.54645 -13.29773 -13.02039 -12.95561 -12.90200 -12.63517 -12.62100 -12.38347 -12.30977 -12.09103 -12.03357 -11.67796 -11.50428 -10.93276 -10.40014 -9.89422 -9.44711 -9.16381 -8.31995 -6.20155 0.15577 0.29520 1.35956 1.39470 1.50432 1.82463 1.85896 2.32176 2.63209 2.95809 3.05116 3.28246 3.54582 3.73273 3.78656 3.86845 3.99325 4.12736 4.29345 4.34721 4.38435 4.41796 4.55280 4.59941 4.74344 4.79747 4.95056 4.97346 5.05680 5.07324 5.13421 5.27486 5.30921 5.32680 5.39735 5.44854 5.61386 5.74249 6.18876 6.29438 6.54248 7.11112 7.34203 7.94467 8.66537 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004461 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.400138 B = 6275.507225 C = 6628.791315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.084 3.916 4 H 0.118 0.882 5 O -0.314 6.314 6 C 0.074 3.926 7 C -0.193 4.193 8 C -0.074 4.074 9 C -0.123 4.123 10 C -0.112 4.112 11 C 0.022 3.978 12 F -0.158 7.158 13 C 0.444 3.556 14 O -0.621 6.621 15 N -0.441 5.441 16 C -0.341 4.341 17 H 0.057 0.943 18 C 0.010 3.990 19 N -0.888 5.888 20 Si 0.984 3.016 21 H -0.281 1.281 22 H -0.262 1.262 23 H -0.270 1.270 24 C 0.075 3.925 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.276 0.724 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.448 6.162 -2.638 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.024 3.976 4 H 0.135 0.865 5 O -0.227 6.227 6 C 0.028 3.972 7 C -0.211 4.211 8 C -0.092 4.092 9 C -0.141 4.141 10 C -0.130 4.130 11 C 0.002 3.998 12 F -0.137 7.137 13 C 0.232 3.768 14 O -0.507 6.507 15 N -0.161 5.161 16 C -0.469 4.469 17 H 0.075 0.925 18 C -0.193 4.193 19 N -0.526 5.526 20 Si 0.807 3.193 21 H -0.208 1.208 22 H -0.186 1.186 23 H -0.194 1.194 24 C -0.047 4.047 25 C -0.214 4.214 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.166 0.834 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.917 6.077 -2.121 19.038 hybrid contribution 1.785 -0.355 0.448 1.875 sum -16.132 5.722 -1.673 17.198 Atomic orbital electron populations 1.21838 0.91723 1.03602 1.02612 1.22013 0.99074 0.92939 1.03323 1.22404 0.92383 0.95900 0.86866 0.86517 1.86258 1.39599 1.61574 1.35293 1.19614 0.88145 0.94324 0.95138 1.21476 0.98744 1.04894 0.96030 1.21489 0.93746 0.93582 1.00397 1.21410 1.01350 1.00789 0.90554 1.21359 0.92049 0.97408 1.02186 1.17658 0.96221 1.06104 0.79814 1.91432 1.80205 1.94523 1.47494 1.21091 0.89924 0.82532 0.83239 1.90505 1.65973 1.53523 1.40728 1.43579 1.06013 1.59447 1.07020 1.19342 0.81937 1.08785 1.36819 0.92511 1.26128 1.03934 0.93138 0.96097 1.69748 1.37145 1.08472 1.37193 0.85089 0.77497 0.78603 0.78065 1.20754 1.18576 1.19424 1.22132 0.94654 0.99164 0.88733 1.22118 1.01501 0.97191 1.00560 0.89835 0.90311 0.93428 0.93262 0.88798 0.83369 0.81092 0.80798 0.82018 0.91403 0.87934 0.90297 0.94153 0.88831 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.55 71.98 0.62 -2.89 16 2 C -0.14 -4.76 5.23 30.59 0.16 -4.60 16 3 C 0.08 3.36 1.72 29.85 0.05 3.41 16 4 H 0.12 3.88 3.91 -2.39 -0.01 3.87 16 5 O -0.31 -13.62 9.06 -74.22 -0.67 -14.29 16 6 C 0.07 2.48 5.33 22.53 0.12 2.60 16 7 C -0.19 -4.66 7.46 22.36 0.17 -4.49 16 8 C -0.07 -1.19 10.04 22.26 0.22 -0.97 16 9 C -0.12 -1.84 10.04 22.28 0.22 -1.61 16 10 C -0.11 -2.35 10.02 22.30 0.22 -2.13 16 11 C 0.02 0.69 7.31 22.45 0.16 0.85 16 12 F -0.16 -5.98 17.11 44.97 0.77 -5.21 16 13 C 0.44 23.60 6.96 87.66 0.61 24.21 16 14 O -0.62 -39.79 16.44 15.75 0.26 -39.53 16 15 N -0.44 -22.83 2.50 -635.54 -1.59 -24.42 16 16 C -0.34 -19.59 8.90 84.04 0.75 -18.85 16 17 H 0.06 3.53 7.75 -2.91 -0.02 3.51 16 18 C 0.01 0.51 5.23 84.93 0.44 0.95 16 19 N -0.89 -46.20 11.04 21.66 0.24 -45.96 16 20 Si 0.98 42.63 29.56 68.60 2.03 44.66 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.08 3.10 5.12 86.38 0.44 3.54 16 25 C -0.16 -5.18 10.17 71.98 0.73 -4.45 16 26 H 0.08 1.61 7.15 -2.38 -0.02 1.60 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.27 6.47 -2.39 -0.02 1.26 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 3.32 5.82 -2.39 -0.01 3.31 16 31 H 0.15 3.23 4.83 -2.91 -0.01 3.22 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.28 13.37 8.31 -92.70 -0.77 12.60 16 36 H 0.10 4.69 5.37 -2.39 -0.01 4.68 16 37 H 0.08 2.76 4.41 -2.39 -0.01 2.75 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.45 7.52 -2.39 -0.02 1.43 16 Total: -1.00 -77.87 327.41 7.02 -70.85 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.07 Total: 18.31 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.92 Total: -4.41 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.35 Total: -70.38 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -0.41 Total: -53.82 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.77 Total: -5.21 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -77.87 7.02 -70.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267167361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.534 kcal (2) G-P(sol) polarization free energy of solvation -77.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds