Wall clock time and date at job start Tue Mar 31 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32774 * 123.45648 * 2 1 4 4 S 1.75508 * 110.57457 * 179.73003 * 3 2 1 5 5 C 1.70443 * 92.44495 * 0.02562 * 4 3 2 6 6 C 1.36013 * 110.81702 * 359.97438 * 5 4 3 7 7 C 1.47188 * 123.45856 * 180.02562 * 6 5 4 8 8 O 1.21633 * 120.00014 * 150.69951 * 7 6 5 9 9 N 1.34781 * 120.00469 * 330.70219 * 7 6 5 10 10 C 1.46506 * 119.99641 * 6.20589 * 9 7 6 11 11 C 1.50697 * 109.47291 * 97.86582 * 10 9 7 12 12 H 1.07996 * 120.00177 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99864 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99694 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46957 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47303 * 119.99697 * 15 13 11 18 18 H 1.48500 * 109.46808 * 240.00147 * 15 13 11 19 19 C 1.46497 * 120.00223 * 186.19784 * 9 7 6 20 20 C 1.53000 * 109.46624 * 88.59750 * 19 9 7 21 21 C 1.53000 * 109.47387 * 64.36674 * 20 19 9 22 22 C 1.53000 * 109.46978 * 184.36533 * 20 19 9 23 23 C 1.52995 * 109.47237 * 304.36664 * 20 19 9 24 24 H 1.09002 * 109.47474 * 90.02168 * 1 2 3 25 25 H 1.08996 * 109.47544 * 210.02329 * 1 2 3 26 26 H 1.09004 * 109.47202 * 330.02717 * 1 2 3 27 27 H 1.07996 * 124.71391 * 359.75722 * 3 2 1 28 28 H 1.08003 * 124.58907 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46516 * 217.87080 * 10 9 7 30 30 H 1.09002 * 109.47137 * 337.86325 * 10 9 7 31 31 H 0.97006 * 119.99645 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47097 * 208.59140 * 19 9 7 33 33 H 1.08996 * 109.47124 * 328.60231 * 19 9 7 34 34 H 1.09004 * 109.47313 * 59.99878 * 21 20 19 35 35 H 1.08995 * 109.47635 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47150 * 300.00268 * 21 20 19 37 37 H 1.09003 * 109.47102 * 60.00076 * 22 20 19 38 38 H 1.09005 * 109.47224 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.47298 * 300.00267 * 22 20 19 40 40 H 1.09001 * 109.47400 * 65.32905 * 23 20 19 41 41 H 1.09003 * 109.47392 * 185.32513 * 23 20 19 42 42 H 1.09003 * 109.47377 * 305.32354 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7165 0.0077 5 6 3.6411 -0.9598 0.0101 6 6 2.3032 -1.2048 0.0058 7 6 1.7262 -2.5589 0.0071 8 8 0.6409 -2.7570 0.5191 9 7 2.4005 -3.5794 -0.5590 10 6 3.7637 -3.3715 -1.0540 11 6 4.7516 -3.8465 -0.0198 12 1 4.3993 -4.2621 0.9126 13 6 6.1052 -3.7515 -0.2646 14 7 6.5340 -3.2467 -1.4008 15 14 7.3297 -4.3409 1.0168 16 1 6.5970 -4.8631 2.1983 17 1 8.1705 -5.4198 0.4387 18 1 8.1949 -3.2079 1.4326 19 6 1.7705 -4.8965 -0.6792 20 6 0.9967 -4.9732 -1.9969 21 6 1.9741 -4.8684 -3.1693 22 6 0.2501 -6.3065 -2.0730 23 6 -0.0080 -3.8214 -2.0661 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3634 0.8903 0.5134 27 1 1.8373 2.1103 -0.0038 28 1 4.4044 -1.7238 0.0145 29 1 3.9048 -3.9341 -1.9768 30 1 3.9221 -2.3105 -1.2475 31 1 7.4863 -3.1795 -1.5729 32 1 2.5388 -5.6696 -0.6636 33 1 1.0847 -5.0487 0.1542 34 1 2.6900 -5.6890 -3.1200 35 1 1.4230 -4.9235 -4.1080 36 1 2.5061 -3.9186 -3.1150 37 1 -0.4463 -6.3812 -1.2378 38 1 -0.3016 -6.3610 -3.0116 39 1 0.9659 -7.1270 -2.0237 40 1 0.5283 -2.8734 -2.1073 41 1 -0.6238 -3.9295 -2.9590 42 1 -0.6445 -3.8407 -1.1814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267255852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:45 Heat of formation + Delta-G solvation = -7.737526 kcal Electronic energy + Delta-G solvation = -23075.497727 eV Core-core repulsion = 19954.303061 eV Total energy + Delta-G solvation = -3121.194665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78175 -37.34367 -35.99538 -34.63438 -32.47626 -30.56971 -27.89504 -27.33548 -26.92188 -26.66401 -25.67944 -23.57168 -22.29803 -20.09136 -18.36279 -17.76475 -16.96524 -16.69685 -15.79415 -15.17015 -14.88805 -14.52005 -14.17774 -13.84416 -13.37372 -13.24807 -13.00507 -12.85539 -12.55397 -12.41526 -12.11234 -11.94066 -11.83341 -11.58603 -11.41596 -11.22723 -11.14872 -11.06882 -10.95141 -10.70417 -10.48452 -10.38455 -10.29721 -10.20834 -9.94108 -9.72219 -8.94836 -8.71366 -8.15012 -7.84755 -7.59168 -6.30630 -4.39717 1.50105 2.15550 2.52163 2.61124 3.14564 3.24316 3.28956 3.89098 4.07425 4.28672 4.99560 5.20633 5.23714 5.28355 5.39502 5.51971 5.68783 5.84208 5.90836 5.93543 5.98329 6.00759 6.14865 6.20400 6.22308 6.24854 6.35024 6.39584 6.44261 6.45982 6.54152 6.59679 6.68270 6.82050 6.88779 6.89877 6.98332 7.18627 7.55224 7.66547 7.94235 8.37561 8.71660 9.07376 9.28951 10.73399 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.008834 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.391098 B = 3168.833220 C = 5300.378842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.051 4.051 3 C -0.264 4.264 4 S 0.137 5.863 5 C -0.181 4.181 6 C -0.173 4.173 7 C 0.582 3.418 8 O -0.567 6.567 9 N -0.584 5.584 10 C 0.206 3.794 11 C -0.542 4.542 12 H 0.065 0.935 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.893 3.107 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.132 3.868 20 C -0.084 4.084 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.132 4.132 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.157 0.843 28 H 0.226 0.774 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 3.154 -1.509 8.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.399 4.399 4 S 0.403 5.597 5 C -0.318 4.318 6 C -0.189 4.189 7 C 0.370 3.630 8 O -0.449 6.449 9 N -0.312 5.312 10 C 0.087 3.913 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.720 3.280 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.206 1.206 19 C 0.009 3.991 20 C -0.085 4.085 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.189 4.189 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.175 0.825 28 H 0.241 0.759 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.475 3.959 -1.363 7.711 hybrid contribution -0.216 -1.180 0.507 1.303 sum -6.691 2.779 -0.856 7.296 Atomic orbital electron populations 1.20620 0.89667 1.03644 1.02054 1.19799 0.96815 0.90398 0.99278 1.25105 0.96893 1.01848 1.16026 1.82937 1.05545 0.99866 1.71320 1.27448 1.01947 1.01893 1.00530 1.20087 0.92238 0.94234 1.12304 1.17483 0.83958 0.83748 0.77847 1.90605 1.22316 1.84510 1.47510 1.47940 1.16762 1.08800 1.57746 1.20261 0.76021 0.99479 0.95587 1.21585 0.90748 1.42317 1.03433 0.91725 1.24991 0.98361 0.94814 0.95662 1.69940 1.15423 1.43816 1.22919 0.86490 0.81037 0.78811 0.81616 1.19488 1.20654 1.20617 1.21345 0.96592 0.85247 0.95962 1.20952 0.95769 0.95450 0.96362 1.21967 0.98566 1.02887 0.96409 1.21781 0.99816 0.96450 1.01260 1.21836 0.98307 0.97844 1.00919 0.91887 0.88827 0.92342 0.82499 0.75855 0.93948 0.92239 0.92274 0.90387 0.90988 0.92696 0.93753 0.91568 0.92815 0.92975 0.92743 0.93046 0.94057 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.90 36.00 0.36 -1.20 16 2 C -0.05 -0.90 6.00 -104.07 -0.62 -1.52 16 3 C -0.26 -4.16 10.91 28.86 0.31 -3.84 16 4 S 0.14 2.29 23.02 -107.50 -2.48 -0.19 16 5 C -0.18 -3.70 8.45 29.93 0.25 -3.45 16 6 C -0.17 -3.52 5.64 -104.63 -0.59 -4.11 16 7 C 0.58 12.45 5.63 -12.62 -0.07 12.38 16 8 O -0.57 -12.52 12.57 5.25 0.07 -12.46 16 9 N -0.58 -12.22 2.00 -176.42 -0.35 -12.57 16 10 C 0.21 4.73 3.94 -5.19 -0.02 4.71 16 11 C -0.54 -13.46 7.68 -34.44 -0.26 -13.73 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.07 1.65 5.32 -17.82 -0.09 1.56 16 14 N -0.88 -22.91 13.29 55.43 0.74 -22.17 16 15 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.13 2.46 4.60 -4.04 -0.02 2.44 16 20 C -0.08 -1.35 0.85 -154.51 -0.13 -1.48 16 21 C -0.14 -2.29 7.51 37.16 0.28 -2.01 16 22 C -0.14 -1.80 8.47 37.16 0.31 -1.48 16 23 C -0.13 -2.16 7.11 37.15 0.26 -1.89 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.63 5.90 -51.93 -0.31 1.32 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.23 5.16 3.81 -52.48 -0.20 4.96 16 29 H 0.04 1.01 5.84 -51.93 -0.30 0.71 16 30 H 0.06 1.42 4.10 -51.93 -0.21 1.21 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 33 H 0.07 1.36 7.39 -51.93 -0.38 0.98 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.22 5.86 -51.93 -0.30 0.91 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.94 6.62 -51.93 -0.34 0.59 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.09 7.21 -51.93 -0.37 0.72 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -26.26 337.82 -8.19 -34.45 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.20 Total: 6.69 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.03 Total: -13.64 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.38 Total: -34.74 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.46 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.48 Total: -0.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.26 -8.19 -34.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267255852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.710 kcal (2) G-P(sol) polarization free energy of solvation -26.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds