Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32774 * 123.45648 * 2 1 4 4 S 1.75508 * 110.57457 * 179.73003 * 3 2 1 5 5 C 1.70443 * 92.44495 * 0.02562 * 4 3 2 6 6 C 1.36013 * 110.81702 * 359.97438 * 5 4 3 7 7 C 1.47188 * 123.45856 * 180.02562 * 6 5 4 8 8 O 1.21633 * 120.00014 * 150.69951 * 7 6 5 9 9 N 1.34781 * 120.00469 * 330.70219 * 7 6 5 10 10 C 1.46506 * 119.99641 * 6.20589 * 9 7 6 11 11 C 1.50697 * 109.47291 * 97.86582 * 10 9 7 12 12 H 1.07996 * 120.00177 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99864 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99694 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46957 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47303 * 119.99697 * 15 13 11 18 18 H 1.48500 * 109.46808 * 240.00147 * 15 13 11 19 19 C 1.46497 * 120.00223 * 186.19784 * 9 7 6 20 20 C 1.53000 * 109.46624 * 88.59750 * 19 9 7 21 21 C 1.53000 * 109.47387 * 64.36674 * 20 19 9 22 22 C 1.53000 * 109.46978 * 184.36533 * 20 19 9 23 23 C 1.52995 * 109.47237 * 304.36664 * 20 19 9 24 24 H 1.09002 * 109.47474 * 90.02168 * 1 2 3 25 25 H 1.08996 * 109.47544 * 210.02329 * 1 2 3 26 26 H 1.09004 * 109.47202 * 330.02717 * 1 2 3 27 27 H 1.07996 * 124.71391 * 359.75722 * 3 2 1 28 28 H 1.08003 * 124.58907 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46516 * 217.87080 * 10 9 7 30 30 H 1.09002 * 109.47137 * 337.86325 * 10 9 7 31 31 H 0.97006 * 119.99645 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47097 * 208.59140 * 19 9 7 33 33 H 1.08996 * 109.47124 * 328.60231 * 19 9 7 34 34 H 1.09004 * 109.47313 * 59.99878 * 21 20 19 35 35 H 1.08995 * 109.47635 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47150 * 300.00268 * 21 20 19 37 37 H 1.09003 * 109.47102 * 60.00076 * 22 20 19 38 38 H 1.09005 * 109.47224 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.47298 * 300.00267 * 22 20 19 40 40 H 1.09001 * 109.47400 * 65.32905 * 23 20 19 41 41 H 1.09003 * 109.47392 * 185.32513 * 23 20 19 42 42 H 1.09003 * 109.47377 * 305.32354 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7165 0.0077 5 6 3.6411 -0.9598 0.0101 6 6 2.3032 -1.2048 0.0058 7 6 1.7262 -2.5589 0.0071 8 8 0.6409 -2.7570 0.5191 9 7 2.4005 -3.5794 -0.5590 10 6 3.7637 -3.3715 -1.0540 11 6 4.7516 -3.8465 -0.0198 12 1 4.3993 -4.2621 0.9126 13 6 6.1052 -3.7515 -0.2646 14 7 6.5340 -3.2467 -1.4008 15 14 7.3297 -4.3409 1.0168 16 1 6.5970 -4.8631 2.1983 17 1 8.1705 -5.4198 0.4387 18 1 8.1949 -3.2079 1.4326 19 6 1.7705 -4.8965 -0.6792 20 6 0.9967 -4.9732 -1.9969 21 6 1.9741 -4.8684 -3.1693 22 6 0.2501 -6.3065 -2.0730 23 6 -0.0080 -3.8214 -2.0661 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3634 0.8903 0.5134 27 1 1.8373 2.1103 -0.0038 28 1 4.4044 -1.7238 0.0145 29 1 3.9048 -3.9341 -1.9768 30 1 3.9221 -2.3105 -1.2475 31 1 7.4863 -3.1795 -1.5729 32 1 2.5388 -5.6696 -0.6636 33 1 1.0847 -5.0487 0.1542 34 1 2.6900 -5.6890 -3.1200 35 1 1.4230 -4.9235 -4.1080 36 1 2.5061 -3.9186 -3.1150 37 1 -0.4463 -6.3812 -1.2378 38 1 -0.3016 -6.3610 -3.0116 39 1 0.9659 -7.1270 -2.0237 40 1 0.5283 -2.8734 -2.1073 41 1 -0.6238 -3.9295 -2.9590 42 1 -0.6445 -3.8407 -1.1814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267255852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = -19.633488 kcal Electronic energy + Delta-G solvation = -23076.013575 eV Core-core repulsion = 19954.303061 eV Total energy + Delta-G solvation = -3121.710513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37150 -38.72731 -37.53406 -36.28985 -34.32834 -31.97647 -29.61994 -28.72985 -28.13021 -28.06963 -27.13815 -25.31709 -23.92196 -21.54842 -19.73242 -19.30145 -18.66651 -18.38110 -17.38845 -16.79304 -16.48906 -16.23453 -15.59192 -15.21744 -14.76814 -14.60847 -14.42895 -14.34841 -14.27104 -13.94903 -13.49122 -13.33000 -13.08213 -12.96078 -12.91897 -12.79415 -12.68012 -12.54934 -12.46031 -12.23538 -12.03522 -11.95417 -11.73959 -11.58937 -11.51521 -11.47344 -10.72606 -10.47449 -9.61016 -9.39383 -9.11611 -8.24064 -6.39555 0.02471 0.78670 1.10736 1.18609 1.36042 1.40977 1.50414 2.30073 2.31664 2.56135 3.03340 3.82223 3.90947 3.97371 4.07135 4.10269 4.35076 4.57978 4.60723 4.66891 4.75344 4.77187 4.82649 4.86313 4.88730 4.93026 4.94397 5.04536 5.05796 5.07382 5.12983 5.21459 5.23457 5.33648 5.43643 5.49524 5.53214 5.64065 5.67239 5.90672 6.02745 6.58611 6.81850 7.28106 7.44105 8.78983 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.008834 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.391098 B = 3168.833220 C = 5300.378842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.075 4.075 3 C -0.242 4.242 4 S 0.182 5.818 5 C -0.217 4.217 6 C -0.189 4.189 7 C 0.575 3.425 8 O -0.580 6.580 9 N -0.586 5.586 10 C 0.224 3.776 11 C -0.548 4.548 12 H 0.048 0.952 13 C 0.032 3.968 14 N -0.907 5.907 15 Si 0.947 3.053 16 H -0.275 1.275 17 H -0.276 1.276 18 H -0.274 1.274 19 C 0.128 3.872 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.198 0.802 28 H 0.196 0.804 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.270 0.730 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 4.159 -1.774 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.376 4.376 4 S 0.449 5.551 5 C -0.354 4.354 6 C -0.206 4.206 7 C 0.363 3.637 8 O -0.463 6.463 9 N -0.314 5.314 10 C 0.103 3.897 11 C -0.586 4.586 12 H 0.066 0.934 13 C -0.170 4.170 14 N -0.545 5.545 15 Si 0.773 3.227 16 H -0.200 1.200 17 H -0.201 1.201 18 H -0.200 1.200 19 C 0.005 3.995 20 C -0.081 4.081 21 C -0.192 4.192 22 C -0.187 4.187 23 C -0.179 4.179 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.215 0.785 28 H 0.213 0.787 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.199 4.958 -1.630 8.892 hybrid contribution 0.007 -1.433 0.600 1.553 sum -7.193 3.525 -1.030 8.076 Atomic orbital electron populations 1.20580 0.88158 1.03876 1.02654 1.20005 0.98003 0.89795 1.00798 1.25561 0.96020 1.03067 1.12958 1.82677 1.06133 0.96388 1.69892 1.27166 1.01454 1.04112 1.02662 1.20327 0.92790 0.94711 1.12771 1.17776 0.83890 0.84415 0.77574 1.90583 1.22757 1.84897 1.48106 1.47948 1.16184 1.09673 1.57617 1.19936 0.76675 0.98672 0.94442 1.21628 0.91577 1.42314 1.03124 0.93403 1.25545 0.99556 0.94843 0.97106 1.70007 1.15829 1.44573 1.24102 0.85663 0.79123 0.78511 0.79434 1.19995 1.20140 1.19982 1.21486 0.96376 0.84082 0.97520 1.20930 0.95553 0.97143 0.94504 1.21886 0.98543 1.01160 0.97620 1.21732 0.99831 0.94575 1.02526 1.21723 0.98046 0.96670 1.01451 0.91077 0.91312 0.89301 0.78457 0.78729 0.95351 0.92946 0.92023 0.91166 0.91651 0.93046 0.91404 0.94338 0.92422 0.90966 0.92103 0.95498 0.91643 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.90 71.23 0.70 -2.04 16 2 C -0.07 -2.55 6.00 -19.47 -0.12 -2.67 16 3 C -0.24 -6.90 10.91 66.64 0.73 -6.18 16 4 S 0.18 5.82 23.02 -56.49 -1.30 4.52 16 5 C -0.22 -9.01 8.45 67.30 0.57 -8.44 16 6 C -0.19 -7.83 5.64 -19.87 -0.11 -7.94 16 7 C 0.57 25.43 5.63 86.59 0.49 25.92 16 8 O -0.58 -26.34 12.57 -4.14 -0.05 -26.39 16 9 N -0.59 -25.57 2.00 -830.30 -1.66 -27.24 16 10 C 0.22 10.70 3.94 85.63 0.34 11.04 16 11 C -0.55 -28.22 7.68 25.60 0.20 -28.02 16 12 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 13 C 0.03 1.61 5.32 84.66 0.45 2.06 16 14 N -0.91 -47.84 13.29 21.45 0.28 -47.56 16 15 Si 0.95 41.10 29.54 68.60 2.03 43.13 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.13 4.93 4.60 86.38 0.40 5.32 16 20 C -0.08 -2.55 0.85 -52.18 -0.04 -2.59 16 21 C -0.13 -4.35 7.51 71.98 0.54 -3.81 16 22 C -0.13 -3.20 8.47 71.98 0.61 -2.59 16 23 C -0.12 -3.94 7.11 71.98 0.51 -3.43 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.37 5.90 -2.39 -0.01 2.36 16 26 H 0.09 2.01 8.13 -2.38 -0.02 1.99 16 27 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.20 9.37 3.81 -2.91 -0.01 9.35 16 29 H 0.03 1.43 5.84 -2.39 -0.01 1.42 16 30 H 0.05 2.63 4.10 -2.39 -0.01 2.62 16 31 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 32 H 0.07 2.75 8.06 -2.39 -0.02 2.73 16 33 H 0.07 2.56 7.39 -2.39 -0.02 2.55 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.44 5.86 -2.39 -0.01 1.43 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 0.98 6.62 -2.39 -0.02 0.96 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.77 7.21 -2.39 -0.02 1.75 16 Total: -1.00 -57.90 337.82 5.57 -52.33 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.02 Total: 24.59 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.26 Total: -23.37 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.38 Total: -74.79 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.30 Total: 4.52 kcal Total: -57.90 5.57 -52.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267255852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.693 kcal (2) G-P(sol) polarization free energy of solvation -57.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds