Wall clock time and date at job start Tue Mar 31 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 N 1.46493 * 109.47137 * 179.97438 * 9 8 6 11 11 C 1.34779 * 119.99644 * 179.97438 * 10 9 8 12 12 N 1.34785 * 119.99633 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00366 * 0.02562 * 11 10 9 14 14 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 15 15 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 16 16 C 1.46509 * 125.97450 * 359.96761 * 15 2 1 17 17 C 1.50698 * 109.47025 * 89.99735 * 16 15 2 18 18 H 1.08000 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99358 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47006 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46890 * 120.00230 * 21 19 17 24 24 H 1.48501 * 109.46779 * 239.99778 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 28 28 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 30 30 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 31 31 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 32 32 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 33 33 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 34 34 H 0.96994 * 120.00085 * 0.02562 * 10 9 8 35 35 H 0.97001 * 119.99957 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00048 * 180.02562 * 12 11 10 37 37 H 1.08994 * 109.46750 * 210.00045 * 16 15 2 38 38 H 1.09004 * 109.46474 * 329.99737 * 16 15 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 7 6.6157 6.0232 0.0286 11 6 6.4788 7.3640 0.0346 12 7 7.5717 8.1529 0.0377 13 8 5.3696 7.8620 0.0371 14 7 3.6337 -0.6577 -0.0036 15 7 2.3017 -1.0909 -0.0059 16 6 1.8500 -2.4847 -0.0128 17 6 1.6945 -2.9553 -1.4359 18 1 1.9108 -2.2836 -2.2535 19 6 1.2770 -4.2437 -1.6941 20 7 1.0140 -5.0617 -0.6985 21 14 1.0848 -4.8273 -3.4582 22 1 1.4409 -3.7240 -4.3861 23 1 1.9842 -5.9844 -3.6975 24 1 -0.3229 -5.2377 -3.6932 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9719 2.1210 -0.0004 29 1 5.6584 1.0776 0.0049 30 1 6.4547 3.4893 0.9060 31 1 6.4532 3.4983 -0.8739 32 1 4.8320 5.3739 -0.8640 33 1 4.8330 5.3656 0.9159 34 1 7.5006 5.6260 0.0262 35 1 8.4566 7.7556 0.0360 36 1 7.4733 9.1179 0.0423 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271127717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:08 Heat of formation + Delta-G solvation = 3.446590 kcal Electronic energy + Delta-G solvation = -22576.106767 eV Core-core repulsion = 18941.396617 eV Total energy + Delta-G solvation = -3634.710149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80200 -40.11856 -39.33636 -35.50692 -34.84608 -33.97043 -33.40913 -31.64109 -31.07547 -30.44088 -26.76186 -26.36316 -24.65626 -22.89549 -21.49707 -21.21476 -19.83800 -19.30151 -18.49238 -17.62452 -16.77939 -16.63818 -16.31752 -16.15111 -15.32899 -15.27579 -14.92240 -14.43431 -14.39268 -14.20055 -13.74172 -13.59258 -12.96256 -12.49917 -12.34000 -12.21717 -12.20004 -11.82774 -11.68209 -11.42844 -11.08752 -10.87528 -10.62953 -10.45788 -10.27142 -10.04629 -9.97808 -9.63431 -9.53875 -9.33900 -8.66887 -7.96509 -7.48524 -6.27592 -4.35279 2.25482 2.37806 2.85224 2.91762 2.92691 3.18887 3.26915 3.33097 3.68061 3.83553 4.13898 4.28907 4.37514 4.68159 4.73123 5.06027 5.07025 5.43806 5.60036 5.68570 5.71911 5.93174 6.09144 6.09713 6.22040 6.34411 6.46292 6.53251 6.55834 6.69987 6.91766 7.03174 7.41462 7.59118 7.61516 7.65576 7.86795 8.02953 8.18385 8.31160 8.62475 8.73402 9.31300 10.79680 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033934 B = 0.002443 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.939453 B =11456.350177 C =11679.922942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.630 5.630 6 C 0.522 3.478 7 O -0.511 6.511 8 C -0.148 4.148 9 C 0.151 3.849 10 N -0.746 5.746 11 C 0.704 3.296 12 N -0.869 5.869 13 O -0.589 6.589 14 N -0.321 5.321 15 N -0.316 5.316 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.891 5.891 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.280 1.280 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.411 0.589 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.415 0.585 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.690 18.612 2.617 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.278 5.278 6 C 0.307 3.693 7 O -0.384 6.384 8 C -0.189 4.189 9 C 0.027 3.973 10 N -0.403 5.403 11 C 0.402 3.598 12 N -0.438 5.438 13 O -0.466 6.466 14 N -0.151 5.151 15 N -0.099 5.099 16 C 0.140 3.860 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.206 1.206 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.246 0.754 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.223 0.777 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.471 17.879 2.664 21.961 hybrid contribution 0.928 -0.135 -0.935 1.325 sum 13.399 17.744 1.729 22.302 Atomic orbital electron populations 1.20386 0.87878 1.03912 1.02572 1.21080 0.94964 0.87131 1.00780 1.21263 0.89730 0.99854 1.21217 1.18990 0.87229 0.89603 1.03323 1.42450 1.07595 1.05060 1.72683 1.20248 0.91002 0.81503 0.76557 1.90705 1.26758 1.73714 1.47229 1.21746 0.97104 0.94517 1.05499 1.20908 0.86082 0.85822 1.04517 1.45045 1.10004 1.04662 1.80614 1.15937 0.84752 0.81492 0.77618 1.42992 1.07587 1.10315 1.82863 1.91015 1.24195 1.73959 1.57471 1.77240 1.00038 1.08510 1.29328 1.49001 1.00943 1.07811 1.52129 1.19703 0.96002 0.71307 0.98961 1.21362 1.46733 0.97968 0.91368 0.91687 1.24936 0.94682 0.96055 0.98162 1.69924 1.44939 1.06961 1.31096 0.86301 0.77895 0.78780 0.83719 1.19574 1.20661 1.20615 0.91050 0.89898 0.90560 0.82278 0.75432 0.87823 0.87804 0.90252 0.90269 0.77068 0.77652 0.75348 0.92996 0.92760 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.90 9.52 -39.83 -0.38 -6.28 16 4 C 0.26 5.16 8.11 -154.38 -1.25 3.90 16 5 N -0.63 -8.91 5.45 -11.13 -0.06 -8.97 16 6 C 0.52 6.66 7.80 -10.98 -0.09 6.57 16 7 O -0.51 -8.55 13.11 5.55 0.07 -8.47 16 8 C -0.15 -1.04 5.81 -27.88 -0.16 -1.20 16 9 C 0.15 1.40 4.96 -4.04 -0.02 1.38 16 10 N -0.75 -5.12 5.56 -65.22 -0.36 -5.48 16 11 C 0.70 6.69 8.84 -86.91 -0.77 5.92 16 12 N -0.87 -4.10 8.88 27.64 0.25 -3.86 16 13 O -0.59 -8.88 17.18 5.29 0.09 -8.79 16 14 N -0.32 -7.26 12.59 31.44 0.40 -6.87 16 15 N -0.32 -7.45 3.59 -58.32 -0.21 -7.66 16 16 C 0.26 6.57 5.81 -5.19 -0.03 6.54 16 17 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 18 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 21 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.16 3.17 5.92 -52.49 -0.31 2.85 16 29 H 0.41 4.40 8.82 -40.82 -0.36 4.04 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.40 1.20 8.49 -40.82 -0.35 0.85 16 35 H 0.40 0.50 8.84 -40.82 -0.36 0.14 16 36 H 0.41 1.70 8.93 -40.82 -0.36 1.33 16 37 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -37.14 342.40 -7.32 -44.47 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.04 Total: 4.94 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -3.33 Total: 3.71 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.74 Total: -56.98 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.16 Total: -17.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.14 -7.32 -44.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271127717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.915 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds