Wall clock time and date at job start Tue Mar 31 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 N 1.46493 * 109.47137 * 179.97438 * 9 8 6 11 11 C 1.34779 * 119.99644 * 179.97438 * 10 9 8 12 12 N 1.34785 * 119.99633 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00366 * 0.02562 * 11 10 9 14 14 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 15 15 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 16 16 C 1.46509 * 125.97450 * 359.96761 * 15 2 1 17 17 C 1.50698 * 109.47025 * 89.99735 * 16 15 2 18 18 H 1.08000 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99358 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47006 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46890 * 120.00230 * 21 19 17 24 24 H 1.48501 * 109.46779 * 239.99778 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 28 28 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 30 30 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 31 31 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 32 32 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 33 33 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 34 34 H 0.96994 * 120.00085 * 0.02562 * 10 9 8 35 35 H 0.97001 * 119.99957 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00048 * 180.02562 * 12 11 10 37 37 H 1.08994 * 109.46750 * 210.00045 * 16 15 2 38 38 H 1.09004 * 109.46474 * 329.99737 * 16 15 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 7 6.6157 6.0232 0.0286 11 6 6.4788 7.3640 0.0346 12 7 7.5717 8.1529 0.0377 13 8 5.3696 7.8620 0.0371 14 7 3.6337 -0.6577 -0.0036 15 7 2.3017 -1.0909 -0.0059 16 6 1.8500 -2.4847 -0.0128 17 6 1.6945 -2.9553 -1.4359 18 1 1.9108 -2.2836 -2.2535 19 6 1.2770 -4.2437 -1.6941 20 7 1.0140 -5.0617 -0.6985 21 14 1.0848 -4.8273 -3.4582 22 1 1.4409 -3.7240 -4.3861 23 1 1.9842 -5.9844 -3.6975 24 1 -0.3229 -5.2377 -3.6932 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9719 2.1210 -0.0004 29 1 5.6584 1.0776 0.0049 30 1 6.4547 3.4893 0.9060 31 1 6.4532 3.4983 -0.8739 32 1 4.8320 5.3739 -0.8640 33 1 4.8330 5.3656 0.9159 34 1 7.5006 5.6260 0.0262 35 1 8.4566 7.7556 0.0360 36 1 7.4733 9.1179 0.0423 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271127717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:07 Heat of formation + Delta-G solvation = -27.796533 kcal Electronic energy + Delta-G solvation = -22577.461570 eV Core-core repulsion = 18941.396617 eV Total energy + Delta-G solvation = -3636.064953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29851 -40.98381 -40.46094 -36.50202 -36.07276 -35.30067 -34.61926 -33.12815 -32.66548 -31.44223 -28.59624 -27.88219 -25.78739 -24.60203 -22.43448 -22.17821 -21.25813 -20.69827 -19.23341 -18.80222 -18.29407 -17.70404 -17.58996 -17.15060 -17.03800 -16.36018 -16.12738 -15.76603 -15.66384 -15.14001 -14.89868 -14.65911 -14.48153 -14.29684 -13.80932 -13.62473 -13.55893 -13.15593 -12.90675 -12.83444 -12.69577 -12.48182 -12.26924 -12.07521 -11.56914 -11.51734 -11.33295 -10.89987 -10.73918 -10.71457 -9.97903 -9.57877 -9.13506 -8.33275 -6.50950 0.92299 1.30138 1.36793 1.38530 1.43786 1.52015 1.92961 2.19562 2.22273 2.32168 2.48775 2.96311 3.49481 3.74898 3.79686 4.01477 4.13182 4.16522 4.47556 4.53947 4.75365 4.80606 4.87245 4.88958 4.95681 4.99506 5.02890 5.15338 5.27603 5.44000 5.53502 5.80686 5.93644 5.96072 6.07223 6.25576 6.30644 6.61967 6.99408 7.15046 7.17648 7.20183 7.69372 8.72795 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033934 B = 0.002443 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.939453 B =11456.350177 C =11679.922942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 C -0.301 4.301 4 C 0.272 3.728 5 N -0.621 5.621 6 C 0.520 3.480 7 O -0.553 6.553 8 C -0.125 4.125 9 C 0.156 3.844 10 N -0.727 5.727 11 C 0.696 3.304 12 N -0.845 5.845 13 O -0.652 6.652 14 N -0.357 5.357 15 N -0.344 5.344 16 C 0.275 3.725 17 C -0.552 4.552 18 H 0.049 0.951 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.268 1.268 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.428 0.572 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.419 0.581 35 H 0.416 0.584 36 H 0.420 0.580 37 H 0.026 0.974 38 H 0.051 0.949 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 19.405 1.958 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C -0.332 4.332 4 C 0.018 3.982 5 N -0.272 5.272 6 C 0.308 3.692 7 O -0.428 6.428 8 C -0.165 4.165 9 C 0.030 3.970 10 N -0.385 5.385 11 C 0.393 3.607 12 N -0.415 5.415 13 O -0.534 6.534 14 N -0.187 5.187 15 N -0.126 5.126 16 C 0.156 3.844 17 C -0.590 4.590 18 H 0.067 0.933 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.193 1.193 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.182 0.818 29 H 0.267 0.733 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.257 0.743 35 H 0.248 0.752 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.570 18.675 2.016 23.771 hybrid contribution 0.390 -0.238 -0.682 0.821 sum 14.960 18.436 1.333 23.780 Atomic orbital electron populations 1.20498 0.85554 1.04317 1.04064 1.21742 0.96640 0.86584 0.99526 1.21448 0.90254 0.99800 1.21673 1.19372 0.88999 0.89228 1.00623 1.42629 1.06871 1.05124 1.72529 1.21352 0.92305 0.81037 0.74506 1.90690 1.29112 1.74213 1.48807 1.21704 0.94553 0.91007 1.09241 1.20649 0.86649 0.87656 1.02055 1.44706 1.10467 1.03652 1.79685 1.16252 0.84725 0.82312 0.77392 1.42759 1.07416 1.10282 1.81023 1.90978 1.26946 1.75177 1.60314 1.77159 0.99942 1.10046 1.31560 1.48783 1.01842 1.07460 1.54516 1.19244 0.94910 0.72449 0.97768 1.21457 1.47468 0.98331 0.91750 0.93300 1.25738 0.93976 0.95917 1.02262 1.70002 1.45110 1.07429 1.33050 0.85299 0.78460 0.78097 0.78560 1.19876 1.19877 1.19283 0.88938 0.91415 0.88094 0.81778 0.73292 0.83776 0.83977 0.93028 0.92874 0.74309 0.75243 0.74762 0.95628 0.93148 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.89 71.24 0.70 -2.23 16 2 C 0.09 3.63 6.92 41.38 0.29 3.92 16 3 C -0.30 -12.29 9.52 22.11 0.21 -12.08 16 4 C 0.27 10.69 8.11 133.32 1.08 11.77 16 5 N -0.62 -16.51 5.45 -307.50 -1.68 -18.18 16 6 C 0.52 12.31 7.80 87.66 0.68 12.99 16 7 O -0.55 -18.30 13.11 -3.06 -0.04 -18.34 16 8 C -0.13 -1.30 5.81 29.85 0.17 -1.13 16 9 C 0.16 2.66 4.96 86.38 0.43 3.09 16 10 N -0.73 -8.15 5.56 -478.53 -2.66 -10.81 16 11 C 0.70 12.28 8.84 179.05 1.58 13.86 16 12 N -0.85 -6.03 8.88 -184.74 -1.64 -7.67 16 13 O -0.65 -19.91 17.18 -3.99 -0.07 -19.98 16 14 N -0.36 -16.41 12.59 -54.44 -0.69 -17.10 16 15 N -0.34 -16.61 3.59 -338.43 -1.22 -17.83 16 16 C 0.28 14.55 5.81 85.63 0.50 15.04 16 17 C -0.55 -30.92 9.39 25.60 0.24 -30.68 16 18 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 19 C 0.02 1.20 5.46 84.66 0.46 1.67 16 20 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 21 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.07 2.51 7.71 -2.39 -0.02 2.49 16 27 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 28 H 0.16 6.55 5.92 -2.91 -0.02 6.53 16 29 H 0.43 8.08 8.82 -92.71 -0.82 7.26 16 30 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 33 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.42 0.76 8.49 -92.71 -0.79 -0.03 16 35 H 0.42 -0.37 8.84 -92.71 -0.82 -1.19 16 36 H 0.42 2.65 8.93 -92.71 -0.83 1.83 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 2.65 7.65 -2.39 -0.02 2.63 16 39 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -85.35 342.40 -1.44 -86.79 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -2.11 Total: 13.27 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 6.35 Total: 16.22 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -7.59 Total: -122.96 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.11 Total: -38.32 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -85.35 -1.44 -86.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271127717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.998 kcal (2) G-P(sol) polarization free energy of solvation -85.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds