Wall clock time and date at job start Tue Mar 31 2020 08:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.46894 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99849 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47228 * 89.99735 * 22 20 18 24 24 H 1.48495 * 109.46938 * 209.99829 * 22 20 18 25 25 H 1.48499 * 109.47174 * 329.99745 * 22 20 18 26 26 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 28 28 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 29 29 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 30 30 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 31 31 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 32 32 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 33 33 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 34 34 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 35 35 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 36 36 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 37 37 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 38 38 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 39 39 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 40 40 H 0.97001 * 119.99341 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.4882 0.4144 -2.8531 19 1 8.0965 0.7855 -2.0416 20 6 8.0856 -0.0577 -4.0026 21 7 7.3448 -0.5091 -4.9910 22 14 9.9474 -0.0561 -4.1558 23 1 10.4873 -1.3413 -3.6441 24 1 10.3265 0.1072 -5.5822 25 1 10.5084 1.0672 -3.3628 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 0.0795 2.3915 -0.8426 32 1 -1.9066 3.8440 -0.9052 33 1 -2.5287 5.1688 1.0731 34 1 -1.1726 5.0383 3.1229 35 1 3.5797 0.6490 -1.9761 36 1 5.9571 2.0049 -1.2782 37 1 6.0163 0.3704 -0.5759 38 1 5.6153 -0.6084 -2.8182 39 1 5.5560 1.0257 -3.5211 40 1 7.7653 -0.8415 -5.7995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273050550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:52 Heat of formation + Delta-G solvation = -103.480138 kcal Electronic energy + Delta-G solvation = -23237.048405 eV Core-core repulsion = 19545.488853 eV Total energy + Delta-G solvation = -3691.559553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.87003 -40.81995 -39.13169 -37.54263 -34.95775 -34.00709 -32.80916 -30.99913 -30.28493 -29.82343 -27.52829 -24.69740 -23.67295 -22.73208 -22.04651 -21.03897 -20.09968 -18.93662 -17.49732 -17.13465 -16.59355 -16.37383 -16.10365 -15.58057 -15.33053 -14.94622 -14.85264 -14.61126 -14.49359 -14.04632 -13.75747 -13.25249 -13.15635 -13.01649 -12.56075 -12.33698 -12.28488 -12.08725 -11.95009 -11.68179 -11.27318 -11.22988 -11.06231 -10.82576 -10.67218 -10.38881 -9.83031 -9.51555 -9.27175 -9.18185 -8.63363 -8.42311 -8.39814 -6.13375 -4.16242 0.83177 0.97230 2.56615 2.78764 3.27485 3.29375 3.33736 3.37968 3.64337 4.01989 4.37833 4.37944 4.47152 4.54328 4.55799 4.78889 4.87288 4.92654 4.99960 5.18624 5.22793 5.24021 5.40196 5.62087 5.70902 5.75550 5.80897 5.87287 5.97619 6.07756 6.23766 6.28047 6.36785 6.66436 6.77926 7.05390 7.45775 7.55394 7.83925 7.86439 8.22446 8.49740 8.89552 9.48946 10.98201 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002806 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.151949 B = 9975.503321 C =10272.797884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.063 3.937 4 H 0.103 0.897 5 O -0.273 6.273 6 C 0.103 3.897 7 C -0.188 4.188 8 C -0.089 4.089 9 C -0.133 4.133 10 C -0.117 4.117 11 C 0.069 3.931 12 F -0.130 7.130 13 C 0.504 3.496 14 O -0.524 6.524 15 N -0.716 5.716 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.398 0.602 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.047 5.830 8.413 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.003 3.997 4 H 0.120 0.880 5 O -0.185 6.185 6 C 0.056 3.944 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.152 4.152 10 C -0.136 4.136 11 C 0.049 3.951 12 F -0.109 7.109 13 C 0.287 3.713 14 O -0.400 6.400 15 N -0.368 5.368 16 C 0.000 4.000 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.337 6.007 9.112 23.967 hybrid contribution 0.836 -0.262 -0.590 1.056 sum -20.501 5.745 8.522 22.933 Atomic orbital electron populations 1.21938 0.94557 1.02684 1.02141 1.21993 0.97176 0.93791 1.04714 1.22545 0.94262 0.95353 0.87537 0.87991 1.86298 1.41571 1.57664 1.32938 1.19134 0.88799 0.92348 0.94074 1.21338 0.97694 1.03980 0.97677 1.21012 0.95892 0.95054 0.98718 1.20924 1.00639 1.01044 0.92554 1.21038 0.93708 0.98682 1.00195 1.17031 0.94152 1.01225 0.82695 1.91526 1.75536 1.95244 1.48555 1.20133 0.88701 0.79040 0.83398 1.90732 1.64650 1.45764 1.38862 1.46248 1.09921 1.63503 1.17149 1.21794 0.75738 1.01159 1.01269 1.19325 0.97163 0.96443 0.89484 1.21044 0.91118 1.42257 1.01695 0.92206 1.24991 0.98587 0.95015 0.95649 1.69950 1.35339 1.42012 1.06003 0.86503 0.85159 0.78596 0.77267 1.20524 1.21143 1.19700 0.91688 0.92219 0.92223 0.89858 0.89167 0.83933 0.84982 0.84903 0.84122 0.76842 0.92355 0.92309 0.95853 0.95881 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.49 37.16 0.32 -0.98 16 2 C -0.14 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.06 0.81 2.53 -27.88 -0.07 0.74 16 4 H 0.10 1.04 5.42 -51.93 -0.28 0.76 16 5 O -0.27 -4.12 8.98 -39.46 -0.35 -4.48 16 6 C 0.10 1.30 5.66 -39.18 -0.22 1.08 16 7 C -0.19 -1.77 7.38 -39.45 -0.29 -2.06 16 8 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 9 C -0.13 -0.98 10.04 -39.56 -0.40 -1.38 16 10 C -0.12 -1.07 10.02 -39.54 -0.40 -1.46 16 11 C 0.07 0.86 7.31 -39.30 -0.29 0.58 16 12 F -0.13 -1.92 17.11 2.25 0.04 -1.88 16 13 C 0.50 8.70 7.18 -10.99 -0.08 8.62 16 14 O -0.52 -11.54 16.51 -14.30 -0.24 -11.78 16 15 N -0.72 -12.02 5.46 -60.29 -0.33 -12.35 16 16 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 28 H 0.06 0.40 6.74 -51.93 -0.35 0.05 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.82 7.77 -51.93 -0.40 0.42 16 31 H 0.14 1.10 4.28 -52.49 -0.22 0.88 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.40 5.48 8.18 -40.82 -0.33 5.15 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -33.47 339.74 -7.88 -41.35 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.28 Total: 0.70 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.55 Total: -7.89 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.41 Total: -37.33 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.59 Total: -16.25 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.47 -7.88 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.133 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds