Wall clock time and date at job start Tue Mar 31 2020 08:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.46894 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99849 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47228 * 89.99735 * 22 20 18 24 24 H 1.48495 * 109.46938 * 209.99829 * 22 20 18 25 25 H 1.48499 * 109.47174 * 329.99745 * 22 20 18 26 26 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 28 28 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 29 29 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 30 30 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 31 31 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 32 32 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 33 33 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 34 34 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 35 35 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 36 36 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 37 37 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 38 38 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 39 39 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 40 40 H 0.97001 * 119.99341 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.4882 0.4144 -2.8531 19 1 8.0965 0.7855 -2.0416 20 6 8.0856 -0.0577 -4.0026 21 7 7.3448 -0.5091 -4.9910 22 14 9.9474 -0.0561 -4.1558 23 1 10.4873 -1.3413 -3.6441 24 1 10.3265 0.1072 -5.5822 25 1 10.5084 1.0672 -3.3628 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 0.0795 2.3915 -0.8426 32 1 -1.9066 3.8440 -0.9052 33 1 -2.5287 5.1688 1.0731 34 1 -1.1726 5.0383 3.1229 35 1 3.5797 0.6490 -1.9761 36 1 5.9571 2.0049 -1.2782 37 1 6.0163 0.3704 -0.5759 38 1 5.6153 -0.6084 -2.8182 39 1 5.5560 1.0257 -3.5211 40 1 7.7653 -0.8415 -5.7995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273050550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:51 Heat of formation + Delta-G solvation = -124.411128 kcal Electronic energy + Delta-G solvation = -23237.956041 eV Core-core repulsion = 19545.488853 eV Total energy + Delta-G solvation = -3692.467189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84236 -41.83535 -40.34616 -38.44859 -36.66329 -35.15947 -34.52993 -31.79925 -31.57882 -30.95418 -28.66777 -26.50705 -24.43155 -23.49080 -23.29678 -22.65919 -21.35032 -19.81867 -18.72422 -18.48320 -17.97355 -17.45722 -17.14045 -16.73114 -16.55929 -16.47202 -16.04379 -15.85570 -15.53083 -15.16743 -14.85253 -14.70778 -14.31868 -14.13592 -13.80302 -13.40205 -13.25060 -13.14181 -12.95134 -12.92379 -12.64721 -12.55617 -12.37109 -12.28122 -12.03034 -11.70900 -11.59168 -11.46355 -10.84295 -10.61467 -10.13954 -9.91508 -9.22692 -8.25330 -6.35211 0.13250 0.24718 1.40778 1.41325 1.41736 1.51101 1.55337 2.36320 2.49880 2.61338 3.09739 3.24492 3.45007 3.56413 3.66879 3.81592 3.94221 4.16366 4.30230 4.34383 4.36515 4.44844 4.46473 4.54350 4.70804 4.81784 4.93737 5.00611 5.08366 5.10424 5.18841 5.26772 5.31053 5.43603 5.44729 5.56896 5.67912 5.77026 6.14722 6.19729 6.50008 6.77305 7.12144 7.33994 8.86306 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002806 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.151949 B = 9975.503321 C =10272.797884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.072 3.928 4 H 0.134 0.866 5 O -0.309 6.309 6 C 0.074 3.926 7 C -0.188 4.188 8 C -0.079 4.079 9 C -0.123 4.123 10 C -0.117 4.117 11 C 0.026 3.974 12 F -0.156 7.156 13 C 0.501 3.499 14 O -0.579 6.579 15 N -0.704 5.704 16 C 0.140 3.860 17 C 0.025 3.975 18 C -0.549 4.549 19 H 0.056 0.944 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.269 1.269 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.415 0.585 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.287 6.352 6.943 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.013 3.987 4 H 0.152 0.848 5 O -0.222 6.222 6 C 0.028 3.972 7 C -0.206 4.206 8 C -0.097 4.097 9 C -0.141 4.141 10 C -0.135 4.135 11 C 0.007 3.993 12 F -0.135 7.135 13 C 0.287 3.713 14 O -0.458 6.458 15 N -0.357 5.357 16 C 0.016 3.984 17 C -0.013 4.013 18 C -0.587 4.587 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.178 0.822 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.252 0.748 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.621 6.521 7.623 25.663 hybrid contribution 1.427 -0.364 -0.137 1.479 sum -22.194 6.157 7.486 24.218 Atomic orbital electron populations 1.21909 0.92423 1.03685 1.02641 1.22024 0.98950 0.91828 1.04515 1.22561 0.90483 0.97312 0.88358 0.84846 1.86240 1.43248 1.58748 1.33944 1.19451 0.89101 0.93103 0.95526 1.21586 0.97809 1.04367 0.96849 1.21505 0.94941 0.93276 0.99978 1.21412 1.00797 1.00454 0.91420 1.21359 0.92581 0.97780 1.01798 1.17638 0.95784 1.03466 0.82442 1.91445 1.76499 1.95650 1.49930 1.21000 0.90800 0.77290 0.82162 1.90702 1.66401 1.48070 1.40657 1.45982 1.08385 1.63389 1.17964 1.21291 0.78283 0.99772 0.99020 1.19123 0.95745 0.95723 0.90664 1.21457 0.92894 1.42489 1.01897 0.92594 1.25811 1.03281 0.94517 0.95282 1.70037 1.37218 1.42559 1.06493 0.85488 0.79548 0.78792 0.77493 1.19807 1.20369 1.19319 0.90450 0.93507 0.89852 0.91879 0.87546 0.82245 0.81305 0.81299 0.82399 0.74780 0.93617 0.93568 0.96805 0.96844 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.49 71.98 0.61 -1.52 16 2 C -0.14 -2.67 5.61 30.60 0.17 -2.50 16 3 C 0.07 1.83 2.53 29.85 0.08 1.90 16 4 H 0.13 2.44 5.42 -2.38 -0.01 2.43 16 5 O -0.31 -9.62 8.98 -74.07 -0.67 -10.28 16 6 C 0.07 1.85 5.66 22.53 0.13 1.98 16 7 C -0.19 -3.05 7.38 22.36 0.16 -2.88 16 8 C -0.08 -0.86 10.04 22.26 0.22 -0.63 16 9 C -0.12 -1.34 10.04 22.28 0.22 -1.12 16 10 C -0.12 -1.95 10.02 22.30 0.22 -1.73 16 11 C 0.03 0.67 7.31 22.45 0.16 0.84 16 12 F -0.16 -4.97 17.11 44.97 0.77 -4.20 16 13 C 0.50 17.64 7.18 87.66 0.63 18.27 16 14 O -0.58 -26.71 16.51 15.97 0.26 -26.45 16 15 N -0.70 -23.71 5.46 -463.06 -2.53 -26.23 16 16 C 0.14 5.99 5.61 86.38 0.48 6.47 16 17 C 0.02 1.22 5.09 29.85 0.15 1.37 16 18 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 19 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 20 C 0.01 0.56 5.46 84.66 0.46 1.03 16 21 N -0.92 -53.09 13.29 21.45 0.28 -52.80 16 22 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.81 6.54 -2.39 -0.02 0.80 16 28 H 0.08 0.79 6.74 -2.39 -0.02 0.77 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.72 7.77 -2.39 -0.02 1.70 16 31 H 0.16 1.88 4.28 -2.91 -0.01 1.87 16 32 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.42 11.03 8.18 -92.71 -0.76 10.28 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -76.03 339.74 4.41 -71.63 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.31 Total: 11.66 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 3.95 Total: -8.69 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.24 Total: -79.04 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.40 Total: -36.73 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.77 Total: -4.20 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.03 4.41 -71.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.785 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds