Wall clock time and date at job start Tue Mar 31 2020 08:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46765 * 2 1 4 4 H 1.09001 * 109.47467 * 304.99665 * 3 2 1 5 5 C 1.50704 * 109.46853 * 184.99598 * 3 2 1 6 6 H 1.07993 * 120.00226 * 239.99499 * 5 3 2 7 7 C 1.37880 * 119.99653 * 60.00126 * 5 3 2 8 8 N 1.31512 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99650 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47391 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47264 * 120.00042 * 9 7 5 12 12 H 1.48502 * 109.47280 * 240.00040 * 9 7 5 13 13 N 1.46498 * 109.47266 * 64.99946 * 3 2 1 14 14 C 1.34776 * 120.00102 * 274.99932 * 13 3 2 15 15 O 1.21288 * 119.99913 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00200 * 180.02562 * 14 13 3 17 17 H 1.08989 * 109.47648 * 59.99537 * 16 14 13 18 18 C 1.53002 * 109.46526 * 299.99525 * 16 14 13 19 19 O 1.42901 * 109.47002 * 179.97438 * 16 14 13 20 20 C 1.35943 * 116.99732 * 204.79927 * 19 16 14 21 21 C 1.38710 * 120.02859 * 174.62311 * 20 19 16 22 22 C 1.38154 * 119.96808 * 180.02562 * 21 20 19 23 23 C 1.38455 * 120.03049 * 0.26347 * 22 21 20 24 24 F 1.35099 * 119.96437 * 179.74726 * 23 22 21 25 25 C 1.38451 * 120.05883 * 359.48143 * 23 22 21 26 26 C 1.38147 * 120.03016 * 0.51804 * 25 23 22 27 27 H 1.08997 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47367 * 299.99897 * 1 2 3 29 29 H 1.08998 * 109.47269 * 60.00386 * 1 2 3 30 30 H 1.08994 * 109.47367 * 240.00102 * 2 1 3 31 31 H 1.09000 * 109.46548 * 119.99450 * 2 1 3 32 32 H 0.96996 * 119.99772 * 179.97438 * 8 7 5 33 33 H 0.97005 * 120.00288 * 94.99742 * 13 3 2 34 34 H 1.09000 * 109.46950 * 180.02562 * 18 16 14 35 35 H 1.09004 * 109.47179 * 299.99880 * 18 16 14 36 36 H 1.08999 * 109.47170 * 60.00315 * 18 16 14 37 37 H 1.08003 * 120.01741 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.98175 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.98377 * 180.23561 * 25 23 22 40 40 H 1.08000 * 120.01349 * 179.72293 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0049 0.8813 -1.3816 10 1 6.5987 1.5474 -0.1946 11 1 6.4971 -0.5174 -1.4627 12 1 6.3991 1.6167 -2.6100 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3394 2.6326 0.4340 16 6 0.0365 3.3386 2.6544 17 1 0.7278 4.1541 2.8667 18 6 0.0805 2.3222 3.7972 19 8 -1.2887 3.8585 2.5294 20 6 -1.6203 4.9029 3.3341 21 6 -2.8497 5.5284 3.1883 22 6 -3.1852 6.5899 4.0064 23 6 -2.2927 7.0329 4.9678 24 9 -2.6202 8.0744 5.7636 25 6 -1.0674 6.4061 5.1179 26 6 -0.7294 5.3444 4.3012 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8294 -0.0612 -2.9497 33 1 2.2718 2.1232 1.9978 34 1 -0.2082 2.8097 4.7283 35 1 -0.6109 1.5067 3.5849 36 1 1.0915 1.9260 3.8923 37 1 -3.5444 5.1858 2.4357 38 1 -4.1422 7.0774 3.8928 39 1 -0.3737 6.7502 5.8707 40 1 0.2284 4.8585 4.4155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273821033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:23 Heat of formation + Delta-G solvation = -117.228484 kcal Electronic energy + Delta-G solvation = -23531.906407 eV Core-core repulsion = 19839.750681 eV Total energy + Delta-G solvation = -3692.155726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81197 -41.65764 -40.37469 -38.25017 -36.84608 -34.51338 -33.50120 -32.43060 -31.79148 -30.21685 -28.87616 -25.85817 -24.94523 -24.18386 -23.25539 -21.88255 -21.08169 -19.48634 -19.16417 -18.35393 -17.82450 -17.18347 -16.98460 -16.83646 -16.50517 -16.18545 -15.85175 -15.66967 -15.16283 -14.72493 -14.59195 -14.32334 -14.17362 -14.04412 -13.63701 -13.52235 -13.27099 -13.17590 -13.13874 -12.86351 -12.70398 -12.69204 -12.13207 -12.05438 -11.95689 -11.76037 -11.57568 -11.03897 -10.64384 -10.49523 -10.18451 -9.67544 -9.12805 -8.15330 -6.32684 0.15122 0.18690 1.45488 1.47027 1.58123 1.68897 1.76190 2.41180 2.56064 2.78900 3.14762 3.32202 3.60164 3.73996 3.82071 3.86445 3.96806 4.15103 4.31354 4.48532 4.50273 4.57244 4.68622 4.73495 4.76665 4.90863 5.06258 5.09075 5.13566 5.16255 5.23544 5.26543 5.43645 5.54978 5.61160 5.68766 5.79552 5.91180 6.17145 6.31500 6.75425 6.93390 7.33768 7.53064 8.90234 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.003140 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.816219 B = 8914.587718 C = 9436.687290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.287 1.287 13 N -0.695 5.695 14 C 0.500 3.500 15 O -0.575 6.575 16 C 0.071 3.929 17 H 0.123 0.877 18 C -0.169 4.169 19 O -0.308 6.308 20 C 0.107 3.893 21 C -0.136 4.136 22 C -0.109 4.109 23 C 0.041 3.959 24 F -0.148 7.148 25 C -0.107 4.107 26 C -0.183 4.183 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 8.909 17.285 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.181 1.181 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.346 5.346 14 C 0.285 3.715 15 O -0.454 6.454 16 C 0.012 3.988 17 H 0.140 0.860 18 C -0.226 4.226 19 O -0.221 6.221 20 C 0.061 3.939 21 C -0.154 4.154 22 C -0.127 4.127 23 C 0.021 3.979 24 F -0.126 7.126 25 C -0.125 4.125 26 C -0.201 4.201 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.180 0.820 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.206 8.721 16.327 19.863 hybrid contribution 1.003 0.041 -0.304 1.048 sum -6.204 8.762 16.023 19.287 Atomic orbital electron populations 1.21689 0.97213 0.99127 1.00154 1.21787 0.93479 0.99132 1.01544 1.18399 0.93759 0.89150 0.81086 0.98533 1.21605 0.91210 1.38796 1.06742 0.90587 1.25770 1.03230 0.94441 0.95090 1.70058 1.37014 1.38416 1.09910 0.85329 0.79217 0.77745 0.78222 1.18141 1.20608 1.21335 1.46113 1.14777 1.55787 1.17885 1.20675 0.82375 0.79231 0.89193 1.90700 1.52389 1.60289 1.42071 1.22362 0.84024 0.98516 0.93928 0.86004 1.22347 1.05056 0.98548 0.96651 1.86220 1.31221 1.45601 1.59077 1.19413 0.95240 0.88145 0.91082 1.20483 0.95860 0.96949 1.02140 1.21136 1.00672 0.96640 0.94286 1.17791 0.96284 0.89382 0.94409 1.91473 1.93003 1.55725 1.72447 1.21196 0.95575 0.95370 1.00407 1.21411 1.01395 1.00162 0.97180 0.93578 0.93742 0.95896 0.91052 0.93537 0.92657 0.75727 0.88504 0.92154 0.88131 0.83938 0.82154 0.82035 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.77 2.24 44.25 0.10 13.87 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -27.59 8.73 25.60 0.22 -27.36 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -51.44 11.29 21.45 0.24 -51.19 16 9 Si 0.97 40.81 29.54 68.60 2.03 42.84 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.69 -26.51 4.91 -446.09 -2.19 -28.70 16 14 C 0.50 18.94 5.80 87.66 0.51 19.44 16 15 O -0.57 -27.72 13.64 15.98 0.22 -27.50 16 16 C 0.07 1.87 2.65 29.85 0.08 1.95 16 17 H 0.12 2.49 6.31 -2.39 -0.02 2.47 16 18 C -0.17 -3.25 9.07 71.98 0.65 -2.60 16 19 O -0.31 -9.23 9.34 -73.87 -0.69 -9.92 16 20 C 0.11 2.55 6.60 22.49 0.15 2.70 16 21 C -0.14 -2.96 9.99 22.36 0.22 -2.74 16 22 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 23 C 0.04 0.77 7.30 22.37 0.16 0.93 16 24 F -0.15 -2.96 17.27 44.97 0.78 -2.19 16 25 C -0.11 -1.77 10.02 22.30 0.22 -1.55 16 26 C -0.18 -3.33 8.24 22.36 0.18 -3.14 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.91 5.65 -2.39 -0.01 1.89 16 29 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 30 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.41 12.37 7.96 -92.70 -0.74 11.63 16 34 H 0.10 1.37 6.90 -2.39 -0.02 1.36 16 35 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.10 1.57 7.56 -2.39 -0.02 1.55 16 37 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.16 2.16 5.42 -2.91 -0.02 2.14 16 Total: -1.00 -68.07 333.02 4.67 -63.40 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.33 Total: 22.85 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 3.96 Total: -9.59 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.95 Total: -79.90 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.47 Total: -37.42 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -68.07 4.67 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.825 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds