Wall clock time and date at job start Tue Mar 31 2020 08:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46668 * 2 1 4 4 H 1.09000 * 109.47391 * 55.00094 * 3 2 1 5 5 C 1.50709 * 109.46934 * 175.00092 * 3 2 1 6 6 H 1.07994 * 119.99903 * 119.99519 * 5 3 2 7 7 C 1.37875 * 119.99872 * 299.99833 * 5 3 2 8 8 N 1.31518 * 119.99843 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46980 * 89.99904 * 9 7 5 11 11 H 1.48496 * 109.47604 * 209.99803 * 9 7 5 12 12 H 1.48505 * 109.47096 * 330.00336 * 9 7 5 13 13 N 1.46500 * 109.47382 * 294.99725 * 3 2 1 14 14 C 1.34771 * 119.99946 * 84.99967 * 13 3 2 15 15 O 1.21287 * 120.00225 * 0.02562 * 14 13 3 16 16 C 1.50702 * 120.00307 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47047 * 60.00393 * 16 14 13 18 18 C 1.53003 * 109.47013 * 300.00332 * 16 14 13 19 19 O 1.42897 * 109.47153 * 180.02562 * 16 14 13 20 20 C 1.35948 * 116.99773 * 204.66206 * 19 16 14 21 21 C 1.38708 * 120.03181 * 354.91884 * 20 19 16 22 22 C 1.38147 * 119.96797 * 180.24501 * 21 20 19 23 23 C 1.38454 * 120.03169 * 359.48052 * 22 21 20 24 24 F 1.35101 * 119.96895 * 180.29199 * 23 22 21 25 25 C 1.38451 * 120.05978 * 0.27222 * 23 22 21 26 26 C 1.38155 * 120.03303 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47042 * 300.00223 * 1 2 3 28 28 H 1.08996 * 109.46938 * 60.00124 * 1 2 3 29 29 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47227 * 240.00289 * 2 1 3 31 31 H 1.08998 * 109.47539 * 119.99428 * 2 1 3 32 32 H 0.97001 * 119.99801 * 180.02562 * 8 7 5 33 33 H 0.97006 * 120.00401 * 265.00993 * 13 3 2 34 34 H 1.08998 * 109.47166 * 60.00067 * 18 16 14 35 35 H 1.08997 * 109.47134 * 179.97438 * 18 16 14 36 36 H 1.08998 * 109.47264 * 299.99928 * 18 16 14 37 37 H 1.07993 * 120.01515 * 0.02756 * 21 20 19 38 38 H 1.08000 * 119.98793 * 179.74662 * 22 21 20 39 39 H 1.08008 * 119.98631 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.01440 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0050 0.8802 1.3811 10 1 6.4427 2.1132 2.0836 11 1 6.4392 -0.3107 2.1546 12 1 6.6131 0.8397 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3394 2.6326 -0.4342 16 6 0.0362 3.3376 -2.6549 17 1 0.0672 2.6129 -3.4685 18 6 1.0066 4.4821 -2.9540 19 8 -1.2889 3.8577 -2.5299 20 6 -1.9971 4.0250 -3.6783 21 6 -1.3933 3.7959 -4.9058 22 6 -2.1127 3.9712 -6.0721 23 6 -3.4388 4.3651 -6.0157 24 9 -4.1428 4.5305 -7.1569 25 6 -4.0442 4.5892 -4.7909 26 6 -3.3258 4.4196 -3.6231 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0610 2.9498 33 1 2.2719 2.1232 -1.9979 34 1 2.0175 4.0857 -3.0492 35 1 0.7184 4.9688 -3.8857 36 1 0.9756 5.2068 -2.1404 37 1 -0.3604 3.4839 -4.9499 38 1 -1.6417 3.7969 -7.0282 39 1 -5.0789 4.8961 -4.7483 40 1 -3.7984 4.5941 -2.6679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273821037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:26 Heat of formation + Delta-G solvation = -99.595251 kcal Electronic energy + Delta-G solvation = -23536.502815 eV Core-core repulsion = 19845.111724 eV Total energy + Delta-G solvation = -3691.391091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.98404 -40.57432 -38.99680 -37.22131 -35.05202 -32.92446 -32.01026 -31.30863 -30.45468 -29.33204 -27.04749 -24.67754 -23.51565 -22.99896 -22.20634 -20.31246 -19.40870 -18.55578 -17.71075 -17.43647 -16.45957 -15.86165 -15.63857 -15.55610 -15.40850 -14.82089 -14.57549 -14.31701 -13.91866 -13.77521 -13.32159 -13.28750 -12.82113 -12.73441 -12.50880 -12.30653 -12.02373 -11.69055 -11.55438 -11.30492 -11.04126 -11.01892 -10.91369 -10.83742 -10.36325 -10.24280 -9.67792 -9.41688 -9.13250 -9.03622 -8.55322 -8.23570 -7.93040 -6.17576 -4.27596 0.93067 1.02742 2.81916 3.19749 3.21274 3.28230 3.29406 3.38181 4.02818 4.12678 4.31274 4.47640 4.53344 4.70770 4.91605 4.95419 5.09191 5.13672 5.17984 5.32377 5.53987 5.60374 5.68078 5.88192 5.94352 6.02053 6.06879 6.34829 6.40644 6.49403 6.60771 6.98002 7.12158 7.22971 7.29989 7.35290 7.55961 7.66136 7.83272 8.11779 8.53781 8.70439 8.99969 9.39666 10.87731 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.003071 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.802101 B = 9114.450628 C = 9490.871442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.061 3.939 17 H 0.093 0.907 18 C -0.175 4.175 19 O -0.278 6.278 20 C 0.131 3.869 21 C -0.187 4.187 22 C -0.111 4.111 23 C 0.050 3.950 24 F -0.144 7.144 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 6.715 -15.048 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.401 6.401 16 C 0.001 3.999 17 H 0.111 0.889 18 C -0.233 4.233 19 O -0.190 6.190 20 C 0.084 3.916 21 C -0.206 4.206 22 C -0.130 4.130 23 C 0.031 3.969 24 F -0.123 7.123 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.951 6.618 -13.984 17.874 hybrid contribution 1.333 -0.089 -0.679 1.498 sum -7.619 6.529 -14.662 17.767 Atomic orbital electron populations 1.21847 0.98315 0.98175 1.01212 1.21954 0.92610 0.99742 1.02419 1.18839 0.94309 0.89156 0.80596 0.93146 1.21199 0.90522 1.39271 1.06402 0.92026 1.24885 0.98658 0.94730 0.95370 1.69892 1.35200 1.37415 1.09309 0.86447 0.84739 0.77692 0.78210 1.20548 1.21051 1.19840 1.46424 1.13882 1.55993 1.18870 1.19757 0.83454 0.79891 0.88072 1.90721 1.51056 1.58636 1.39652 1.22444 0.81637 0.96781 0.98995 0.88894 1.22333 0.99180 0.98566 1.03204 1.86276 1.26458 1.78389 1.27857 1.19165 0.91714 0.95200 0.85510 1.21223 1.01555 1.06540 0.91276 1.20915 0.92607 1.00030 0.99407 1.17562 0.90811 1.06526 0.82031 1.91478 1.78587 1.93683 1.48579 1.20948 1.00852 1.00929 0.90335 1.20338 0.91412 1.03317 0.99171 0.93065 0.94459 0.95716 0.94949 0.88138 0.92479 0.77912 0.89905 0.91255 0.90535 0.84145 0.84543 0.84141 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.09 11.29 55.43 0.63 -23.46 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.70 -13.56 4.91 -54.93 -0.27 -13.83 16 14 C 0.51 9.59 5.80 -10.99 -0.06 9.53 16 15 O -0.52 -12.19 13.64 -14.36 -0.20 -12.38 16 16 C 0.06 0.86 2.65 -27.88 -0.07 0.79 16 17 H 0.09 1.08 6.31 -51.93 -0.33 0.75 16 18 C -0.18 -1.98 9.06 37.16 0.34 -1.64 16 19 O -0.28 -4.26 9.33 -39.49 -0.37 -4.63 16 20 C 0.13 1.65 6.60 -39.23 -0.26 1.39 16 21 C -0.19 -1.96 8.23 -39.44 -0.32 -2.29 16 22 C -0.11 -1.08 10.02 -39.54 -0.40 -1.48 16 23 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 24 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 25 C -0.11 -1.11 10.02 -39.53 -0.40 -1.51 16 26 C -0.12 -1.39 9.99 -39.44 -0.39 -1.79 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.80 5.65 -51.93 -0.29 0.50 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.29 7.96 -40.82 -0.32 5.97 16 34 H 0.08 0.83 7.56 -51.93 -0.39 0.43 16 35 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.14 1.23 5.43 -52.49 -0.28 0.94 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -30.10 333.02 -7.58 -37.68 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.17 Total: 6.62 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.24 Total: -8.45 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.36 Total: -37.29 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.56 Total: -17.01 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.10 -7.58 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.912 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds