Wall clock time and date at job start Tue Mar 31 2020 08:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46668 * 2 1 4 4 H 1.09000 * 109.47391 * 55.00094 * 3 2 1 5 5 C 1.50709 * 109.46934 * 175.00092 * 3 2 1 6 6 H 1.07994 * 119.99903 * 119.99519 * 5 3 2 7 7 C 1.37875 * 119.99872 * 299.99833 * 5 3 2 8 8 N 1.31518 * 119.99843 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46980 * 89.99904 * 9 7 5 11 11 H 1.48496 * 109.47604 * 209.99803 * 9 7 5 12 12 H 1.48505 * 109.47096 * 330.00336 * 9 7 5 13 13 N 1.46500 * 109.47382 * 294.99725 * 3 2 1 14 14 C 1.34771 * 119.99946 * 84.99967 * 13 3 2 15 15 O 1.21287 * 120.00225 * 0.02562 * 14 13 3 16 16 C 1.50702 * 120.00307 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47047 * 60.00393 * 16 14 13 18 18 C 1.53003 * 109.47013 * 300.00332 * 16 14 13 19 19 O 1.42897 * 109.47153 * 180.02562 * 16 14 13 20 20 C 1.35948 * 116.99773 * 204.66206 * 19 16 14 21 21 C 1.38708 * 120.03181 * 354.91884 * 20 19 16 22 22 C 1.38147 * 119.96797 * 180.24501 * 21 20 19 23 23 C 1.38454 * 120.03169 * 359.48052 * 22 21 20 24 24 F 1.35101 * 119.96895 * 180.29199 * 23 22 21 25 25 C 1.38451 * 120.05978 * 0.27222 * 23 22 21 26 26 C 1.38155 * 120.03303 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47042 * 300.00223 * 1 2 3 28 28 H 1.08996 * 109.46938 * 60.00124 * 1 2 3 29 29 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47227 * 240.00289 * 2 1 3 31 31 H 1.08998 * 109.47539 * 119.99428 * 2 1 3 32 32 H 0.97001 * 119.99801 * 180.02562 * 8 7 5 33 33 H 0.97006 * 120.00401 * 265.00993 * 13 3 2 34 34 H 1.08998 * 109.47166 * 60.00067 * 18 16 14 35 35 H 1.08997 * 109.47134 * 179.97438 * 18 16 14 36 36 H 1.08998 * 109.47264 * 299.99928 * 18 16 14 37 37 H 1.07993 * 120.01515 * 0.02756 * 21 20 19 38 38 H 1.08000 * 119.98793 * 179.74662 * 22 21 20 39 39 H 1.08008 * 119.98631 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.01440 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0050 0.8802 1.3811 10 1 6.4427 2.1132 2.0836 11 1 6.4392 -0.3107 2.1546 12 1 6.6131 0.8397 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3394 2.6326 -0.4342 16 6 0.0362 3.3376 -2.6549 17 1 0.0672 2.6129 -3.4685 18 6 1.0066 4.4821 -2.9540 19 8 -1.2889 3.8577 -2.5299 20 6 -1.9971 4.0250 -3.6783 21 6 -1.3933 3.7959 -4.9058 22 6 -2.1127 3.9712 -6.0721 23 6 -3.4388 4.3651 -6.0157 24 9 -4.1428 4.5305 -7.1569 25 6 -4.0442 4.5892 -4.7909 26 6 -3.3258 4.4196 -3.6231 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0610 2.9498 33 1 2.2719 2.1232 -1.9979 34 1 2.0175 4.0857 -3.0492 35 1 0.7184 4.9688 -3.8857 36 1 0.9756 5.2068 -2.1404 37 1 -0.3604 3.4839 -4.9499 38 1 -1.6417 3.7969 -7.0282 39 1 -5.0789 4.8961 -4.7483 40 1 -3.7984 4.5941 -2.6679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273821037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:25 Heat of formation + Delta-G solvation = -117.124989 kcal Electronic energy + Delta-G solvation = -23537.262961 eV Core-core repulsion = 19845.111724 eV Total energy + Delta-G solvation = -3692.151238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.80880 -41.65672 -40.37250 -38.25277 -36.84615 -34.51451 -33.54094 -32.41445 -31.75280 -30.21017 -28.90920 -25.87874 -24.92059 -24.18622 -23.24741 -21.89005 -21.08853 -19.47902 -19.17268 -18.35012 -17.81565 -17.24627 -16.99551 -16.76163 -16.49588 -16.19557 -15.75983 -15.68208 -15.25513 -14.77212 -14.59244 -14.35164 -14.14507 -13.93406 -13.72574 -13.52763 -13.24227 -13.15791 -13.13948 -12.87915 -12.70229 -12.67674 -12.15737 -12.08021 -11.94218 -11.76757 -11.57632 -11.05774 -10.63866 -10.49023 -10.18242 -9.67729 -9.12610 -8.14929 -6.32297 0.15328 0.18929 1.46837 1.46965 1.57252 1.68103 1.77057 2.41382 2.56204 2.78839 3.15144 3.32425 3.60030 3.73967 3.82314 3.86515 3.95682 4.15289 4.31543 4.48305 4.49185 4.55981 4.67826 4.73125 4.75605 4.91071 5.05480 5.09155 5.13806 5.15777 5.23935 5.25205 5.42580 5.54467 5.61108 5.68944 5.79074 5.91216 6.16845 6.31657 6.75478 6.93375 7.33976 7.53095 8.90481 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.003071 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.802101 B = 9114.450628 C = 9490.871442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.695 5.695 14 C 0.500 3.500 15 O -0.575 6.575 16 C 0.072 3.928 17 H 0.125 0.875 18 C -0.169 4.169 19 O -0.308 6.308 20 C 0.107 3.893 21 C -0.183 4.183 22 C -0.107 4.107 23 C 0.041 3.959 24 F -0.148 7.148 25 C -0.109 4.109 26 C -0.136 4.136 27 H 0.023 0.977 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 6.997 -18.035 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.346 5.346 14 C 0.285 3.715 15 O -0.454 6.454 16 C 0.012 3.988 17 H 0.143 0.857 18 C -0.227 4.227 19 O -0.222 6.222 20 C 0.061 3.939 21 C -0.201 4.201 22 C -0.125 4.125 23 C 0.021 3.979 24 F -0.126 7.126 25 C -0.127 4.127 26 C -0.154 4.154 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.953 6.917 -17.031 20.028 hybrid contribution 0.915 -0.140 0.225 0.952 sum -7.038 6.777 -16.806 19.440 Atomic orbital electron populations 1.21687 0.97240 0.99146 1.00097 1.21804 0.93465 0.99233 1.01578 1.18395 0.93789 0.89076 0.81101 0.98487 1.21571 0.91178 1.38832 1.06754 0.90537 1.25770 1.03229 0.94430 0.95103 1.70055 1.37090 1.38402 1.09890 0.85382 0.79208 0.77254 0.78708 1.20612 1.21271 1.18128 1.46111 1.14785 1.55750 1.17910 1.20672 0.82419 0.78936 0.89455 1.90700 1.52406 1.60290 1.42045 1.22358 0.82111 0.98128 0.96163 0.85738 1.22346 0.99317 0.97241 1.03779 1.86226 1.27080 1.79053 1.29797 1.19414 0.92099 0.96822 0.85532 1.21408 1.02475 1.05822 0.90423 1.21196 0.92199 0.98820 1.00295 1.17790 0.91373 1.06675 0.82020 1.91474 1.78740 1.93727 1.48708 1.21134 1.01718 1.00153 0.89725 1.20479 0.91448 1.03754 0.99764 0.95795 0.93934 0.93532 0.93584 0.90960 0.92660 0.75724 0.88202 0.88438 0.92440 0.82060 0.82008 0.82174 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 13.79 2.24 44.25 0.10 13.89 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -27.53 8.73 25.60 0.22 -27.30 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -51.47 11.29 21.45 0.24 -51.23 16 9 Si 0.97 40.75 29.54 68.60 2.03 42.78 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 13 N -0.69 -26.51 4.91 -446.08 -2.19 -28.71 16 14 C 0.50 18.95 5.80 87.66 0.51 19.45 16 15 O -0.57 -27.73 13.64 15.99 0.22 -27.51 16 16 C 0.07 1.89 2.65 29.85 0.08 1.97 16 17 H 0.13 2.46 6.31 -2.39 -0.02 2.45 16 18 C -0.17 -3.40 9.06 71.98 0.65 -2.75 16 19 O -0.31 -9.25 9.33 -73.93 -0.69 -9.94 16 20 C 0.11 2.54 6.60 22.50 0.15 2.68 16 21 C -0.18 -3.27 8.23 22.36 0.18 -3.09 16 22 C -0.11 -1.74 10.02 22.30 0.22 -1.52 16 23 C 0.04 0.76 7.30 22.37 0.16 0.93 16 24 F -0.15 -2.93 17.27 44.97 0.78 -2.16 16 25 C -0.11 -1.98 10.02 22.30 0.22 -1.76 16 26 C -0.14 -2.95 9.99 22.36 0.22 -2.73 16 27 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 28 H 0.04 1.83 5.65 -2.39 -0.01 1.81 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.41 12.37 7.96 -92.70 -0.74 11.63 16 34 H 0.10 1.65 7.56 -2.39 -0.02 1.64 16 35 H 0.10 1.43 6.90 -2.39 -0.02 1.42 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.16 2.11 5.43 -2.91 -0.02 2.09 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -68.01 333.02 4.67 -63.34 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.33 Total: 23.06 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 3.96 Total: -9.63 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.95 Total: -79.94 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.47 Total: -37.46 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -68.01 4.67 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.785 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds