Wall clock time and date at job start Tue Mar 31 2020 08:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 H 1.09001 * 109.46894 * 54.99750 * 3 2 1 5 5 C 1.50701 * 109.47034 * 174.99655 * 3 2 1 6 6 H 1.08000 * 119.99662 * 120.00482 * 5 3 2 7 7 C 1.37874 * 120.00164 * 299.99959 * 5 3 2 8 8 N 1.31514 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47504 * 89.99900 * 9 7 5 11 11 H 1.48504 * 109.46969 * 210.00273 * 9 7 5 12 12 H 1.48505 * 109.46851 * 329.99728 * 9 7 5 13 13 N 1.46498 * 109.47161 * 294.99968 * 3 2 1 14 14 C 1.34780 * 120.00066 * 84.99805 * 13 3 2 15 15 O 1.21275 * 119.99956 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99725 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.47400 * 304.99840 * 16 14 13 18 18 C 1.52996 * 109.47394 * 65.00215 * 16 14 13 19 19 O 1.42905 * 109.47127 * 184.99834 * 16 14 13 20 20 C 1.35939 * 116.99929 * 155.17056 * 19 16 14 21 21 C 1.38702 * 120.03375 * 5.19969 * 20 19 16 22 22 C 1.38148 * 119.97326 * 180.25053 * 21 20 19 23 23 C 1.38461 * 120.02930 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.96745 * 179.97438 * 23 22 21 25 25 C 1.38451 * 120.05609 * 359.97438 * 23 22 21 26 26 C 1.38143 * 120.03576 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.46735 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47335 * 300.00072 * 1 2 3 29 29 H 1.09004 * 109.47040 * 60.00362 * 1 2 3 30 30 H 1.08999 * 109.47335 * 239.99928 * 2 1 3 31 31 H 1.08996 * 109.47338 * 119.99520 * 2 1 3 32 32 H 0.97001 * 120.00001 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00268 * 264.99951 * 13 3 2 34 34 H 1.09005 * 109.47153 * 299.99470 * 18 16 14 35 35 H 1.08997 * 109.47335 * 59.99743 * 18 16 14 36 36 H 1.09000 * 109.47478 * 180.02562 * 18 16 14 37 37 H 1.08001 * 120.01624 * 0.24429 * 21 20 19 38 38 H 1.08004 * 119.99115 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.98109 * 180.02562 * 25 23 22 40 40 H 1.07996 * 120.01912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3376 2.1734 9 14 6.0048 0.8815 1.3820 10 1 6.4415 2.1144 2.0850 11 1 6.4395 -0.3096 2.1551 12 1 6.6135 0.8418 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4345 16 6 0.0362 3.3376 -2.6549 17 1 0.7770 4.0941 -2.9141 18 6 -0.0411 2.2956 -3.7724 19 8 -1.2410 3.9576 -2.4926 20 6 -1.5264 5.0059 -3.3097 21 6 -0.6430 5.3603 -4.3186 22 6 -0.9318 6.4291 -5.1449 23 6 -2.1023 7.1468 -4.9660 24 9 -2.3832 8.1921 -5.7745 25 6 -2.9849 6.7941 -3.9593 26 6 -2.6992 5.7252 -3.1322 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8292 -0.0601 2.9504 33 1 2.2719 2.1232 -1.9978 34 1 0.9331 1.8226 -3.8963 35 1 -0.7819 1.5392 -3.5133 36 1 -0.3291 2.7826 -4.7041 37 1 0.2703 4.8010 -4.4581 38 1 -0.2440 6.7055 -5.9304 39 1 -3.8978 7.3546 -3.8211 40 1 -3.3876 5.4506 -2.3468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273821040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:28 Heat of formation + Delta-G solvation = -99.735168 kcal Electronic energy + Delta-G solvation = -23528.685654 eV Core-core repulsion = 19837.288495 eV Total energy + Delta-G solvation = -3691.397159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.97914 -40.57374 -38.99994 -37.21879 -35.05220 -32.88730 -32.00326 -31.28609 -30.53313 -29.34161 -27.02103 -24.68286 -23.51552 -22.99607 -22.21331 -20.30011 -19.41399 -18.55310 -17.70194 -17.43076 -16.44549 -15.84050 -15.71324 -15.50319 -15.38675 -14.88661 -14.58518 -14.31378 -13.95406 -13.73368 -13.31140 -13.13380 -12.90699 -12.72134 -12.59683 -12.31630 -11.95664 -11.78172 -11.52057 -11.29955 -11.06566 -10.99298 -10.90107 -10.84385 -10.35958 -10.23981 -9.67284 -9.41371 -9.13067 -9.03657 -8.55337 -8.23040 -7.93193 -6.17555 -4.27614 0.93493 1.03018 2.82234 3.19137 3.21278 3.28332 3.29523 3.38489 4.02926 4.12936 4.31568 4.48013 4.53692 4.70871 4.91929 4.95274 5.09228 5.13791 5.17834 5.32568 5.52965 5.58727 5.67964 5.88394 5.94652 5.99867 6.06342 6.35237 6.41651 6.49653 6.61380 6.98633 7.12247 7.23311 7.30156 7.35600 7.56116 7.66304 7.83464 8.11939 8.53812 8.70433 8.99986 9.39694 10.87729 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003159 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.455301 B = 8860.525900 C = 9394.742768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.061 3.939 17 H 0.094 0.906 18 C -0.174 4.174 19 O -0.278 6.278 20 C 0.130 3.870 21 C -0.187 4.187 22 C -0.111 4.111 23 C 0.050 3.950 24 F -0.144 7.144 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 8.220 -14.497 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.400 6.400 16 C 0.001 3.999 17 H 0.111 0.889 18 C -0.232 4.232 19 O -0.190 6.190 20 C 0.084 3.916 21 C -0.206 4.206 22 C -0.130 4.130 23 C 0.031 3.969 24 F -0.123 7.123 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.288 8.019 -13.472 17.733 hybrid contribution 1.468 0.187 -0.571 1.586 sum -6.820 8.206 -14.042 17.636 Atomic orbital electron populations 1.21853 0.98293 0.98160 1.01276 1.21943 0.92629 0.99681 1.02390 1.18837 0.94291 0.89196 0.80575 0.93187 1.21203 0.90547 1.39283 1.06429 0.92035 1.24883 0.98664 0.94725 0.95356 1.69891 1.35202 1.37432 1.09278 0.86446 0.84734 0.77694 0.78215 1.20547 1.21046 1.19835 1.46423 1.13879 1.56049 1.18839 1.19754 0.83402 0.80170 0.87838 1.90717 1.51045 1.58539 1.39732 1.22444 0.84907 0.95974 0.96559 0.88884 1.22317 1.04363 0.99315 0.97198 1.86276 1.34617 1.42532 1.55567 1.19164 0.94366 0.88045 0.90043 1.21225 1.01404 1.00420 0.97529 1.20920 0.96150 0.95450 1.00436 1.17566 0.96799 0.88996 0.93563 1.91480 1.93800 1.55327 1.71719 1.20944 0.99816 0.97743 0.94562 1.20335 0.96798 0.95481 1.01625 0.95746 0.93111 0.94308 0.94937 0.88195 0.92477 0.77922 0.89964 0.90618 0.91205 0.84132 0.84536 0.84141 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 13 N -0.70 -13.57 4.98 -54.93 -0.27 -13.84 16 14 C 0.51 9.59 5.75 -10.98 -0.06 9.52 16 15 O -0.52 -12.17 13.64 -14.30 -0.20 -12.37 16 16 C 0.06 0.86 2.64 -27.89 -0.07 0.78 16 17 H 0.09 1.09 6.31 -51.93 -0.33 0.76 16 18 C -0.17 -1.94 9.12 37.16 0.34 -1.60 16 19 O -0.28 -4.26 9.34 -39.41 -0.37 -4.63 16 20 C 0.13 1.65 6.60 -39.23 -0.26 1.39 16 21 C -0.19 -1.97 8.24 -39.44 -0.33 -2.30 16 22 C -0.11 -1.09 10.02 -39.53 -0.40 -1.49 16 23 C 0.05 0.53 7.30 -39.42 -0.29 0.25 16 24 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 25 C -0.11 -1.12 10.02 -39.54 -0.40 -1.51 16 26 C -0.12 -1.40 9.98 -39.44 -0.39 -1.79 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 29 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.31 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.39 6.29 8.32 -40.82 -0.34 5.95 16 34 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.63 6.91 -51.93 -0.36 0.28 16 37 H 0.14 1.23 5.42 -52.49 -0.28 0.95 16 38 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -30.15 333.84 -7.60 -37.75 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.20 Total: 6.51 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.23 Total: -8.43 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.35 Total: -37.32 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.56 Total: -16.99 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.15 -7.60 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.984 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds