Wall clock time and date at job start Tue Mar 31 2020 08:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 H 1.09001 * 109.46894 * 54.99750 * 3 2 1 5 5 C 1.50701 * 109.47034 * 174.99655 * 3 2 1 6 6 H 1.08000 * 119.99662 * 120.00482 * 5 3 2 7 7 C 1.37874 * 120.00164 * 299.99959 * 5 3 2 8 8 N 1.31514 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99977 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47504 * 89.99900 * 9 7 5 11 11 H 1.48504 * 109.46969 * 210.00273 * 9 7 5 12 12 H 1.48505 * 109.46851 * 329.99728 * 9 7 5 13 13 N 1.46498 * 109.47161 * 294.99968 * 3 2 1 14 14 C 1.34780 * 120.00066 * 84.99805 * 13 3 2 15 15 O 1.21275 * 119.99956 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99725 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.47400 * 304.99840 * 16 14 13 18 18 C 1.52996 * 109.47394 * 65.00215 * 16 14 13 19 19 O 1.42905 * 109.47127 * 184.99834 * 16 14 13 20 20 C 1.35939 * 116.99929 * 155.17056 * 19 16 14 21 21 C 1.38702 * 120.03375 * 5.19969 * 20 19 16 22 22 C 1.38148 * 119.97326 * 180.25053 * 21 20 19 23 23 C 1.38461 * 120.02930 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.96745 * 179.97438 * 23 22 21 25 25 C 1.38451 * 120.05609 * 359.97438 * 23 22 21 26 26 C 1.38143 * 120.03576 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.46735 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47335 * 300.00072 * 1 2 3 29 29 H 1.09004 * 109.47040 * 60.00362 * 1 2 3 30 30 H 1.08999 * 109.47335 * 239.99928 * 2 1 3 31 31 H 1.08996 * 109.47338 * 119.99520 * 2 1 3 32 32 H 0.97001 * 120.00001 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00268 * 264.99951 * 13 3 2 34 34 H 1.09005 * 109.47153 * 299.99470 * 18 16 14 35 35 H 1.08997 * 109.47335 * 59.99743 * 18 16 14 36 36 H 1.09000 * 109.47478 * 180.02562 * 18 16 14 37 37 H 1.08001 * 120.01624 * 0.24429 * 21 20 19 38 38 H 1.08004 * 119.99115 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.98109 * 180.02562 * 25 23 22 40 40 H 1.07996 * 120.01912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3376 2.1734 9 14 6.0048 0.8815 1.3820 10 1 6.4415 2.1144 2.0850 11 1 6.4395 -0.3096 2.1551 12 1 6.6135 0.8418 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4345 16 6 0.0362 3.3376 -2.6549 17 1 0.7770 4.0941 -2.9141 18 6 -0.0411 2.2956 -3.7724 19 8 -1.2410 3.9576 -2.4926 20 6 -1.5264 5.0059 -3.3097 21 6 -0.6430 5.3603 -4.3186 22 6 -0.9318 6.4291 -5.1449 23 6 -2.1023 7.1468 -4.9660 24 9 -2.3832 8.1921 -5.7745 25 6 -2.9849 6.7941 -3.9593 26 6 -2.6992 5.7252 -3.1322 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8292 -0.0601 2.9504 33 1 2.2719 2.1232 -1.9978 34 1 0.9331 1.8226 -3.8963 35 1 -0.7819 1.5392 -3.5133 36 1 -0.3291 2.7826 -4.7041 37 1 0.2703 4.8010 -4.4581 38 1 -0.2440 6.7055 -5.9304 39 1 -3.8978 7.3546 -3.8211 40 1 -3.3876 5.4506 -2.3468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273821040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:28 Heat of formation + Delta-G solvation = -117.362831 kcal Electronic energy + Delta-G solvation = -23529.450046 eV Core-core repulsion = 19837.288495 eV Total energy + Delta-G solvation = -3692.161551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.81045 -41.65761 -40.37602 -38.25202 -36.84620 -34.49491 -33.49283 -32.43994 -31.80626 -30.21819 -28.88471 -25.86218 -24.93700 -24.18450 -23.25383 -21.87338 -21.09369 -19.48232 -19.15992 -18.35332 -17.82359 -17.18810 -16.98005 -16.83458 -16.50157 -16.18676 -15.86553 -15.66745 -15.15631 -14.72503 -14.58747 -14.32669 -14.16141 -14.06320 -13.64223 -13.51510 -13.26247 -13.17239 -13.13962 -12.87188 -12.70327 -12.68589 -12.14608 -12.05648 -11.95928 -11.76089 -11.56850 -11.05577 -10.63961 -10.48991 -10.18473 -9.67674 -9.12835 -8.15202 -6.32703 0.15154 0.18618 1.46632 1.46830 1.57153 1.71790 1.72855 2.41182 2.56055 2.79145 3.14788 3.32169 3.60160 3.73877 3.82381 3.87200 3.96061 4.15136 4.31372 4.48693 4.50343 4.57304 4.68170 4.73181 4.76750 4.90856 5.06123 5.09032 5.13567 5.15931 5.23487 5.26620 5.43669 5.54982 5.60857 5.68695 5.79613 5.91224 6.17120 6.31454 6.75138 6.93432 7.33723 7.53060 8.90153 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.003159 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.455301 B = 8860.525900 C = 9394.742768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.695 5.695 14 C 0.500 3.500 15 O -0.574 6.574 16 C 0.071 3.929 17 H 0.123 0.877 18 C -0.168 4.168 19 O -0.308 6.308 20 C 0.107 3.893 21 C -0.183 4.183 22 C -0.107 4.107 23 C 0.041 3.959 24 F -0.148 7.148 25 C -0.109 4.109 26 C -0.136 4.136 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 8.911 -17.306 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.346 5.346 14 C 0.285 3.715 15 O -0.454 6.454 16 C 0.012 3.988 17 H 0.140 0.860 18 C -0.225 4.225 19 O -0.221 6.221 20 C 0.061 3.939 21 C -0.201 4.201 22 C -0.125 4.125 23 C 0.021 3.979 24 F -0.126 7.126 25 C -0.127 4.127 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.090 8.729 -16.340 19.835 hybrid contribution 1.013 0.057 0.297 1.057 sum -6.077 8.785 -16.042 19.274 Atomic orbital electron populations 1.21692 0.97200 0.99141 1.00167 1.21786 0.93491 0.99110 1.01549 1.18393 0.93736 0.89162 0.81066 0.98573 1.21577 0.91230 1.38883 1.06786 0.90596 1.25768 1.03239 0.94414 0.95083 1.70053 1.37094 1.38392 1.09853 0.85381 0.79196 0.77259 0.78712 1.20637 1.21227 1.18129 1.46111 1.14760 1.55843 1.17875 1.20668 0.82353 0.79253 0.89181 1.90696 1.52366 1.60258 1.42089 1.22364 0.85531 0.97081 0.93851 0.86002 1.22332 1.05014 0.98274 0.96923 1.86224 1.35062 1.43765 1.57092 1.19414 0.95541 0.88055 0.90886 1.21411 1.01561 1.00545 0.96624 1.21200 0.96101 0.94658 1.00581 1.17794 0.97354 0.89069 0.93653 1.91475 1.93872 1.55507 1.71795 1.21133 1.00489 0.97213 0.93899 1.20480 0.96879 0.95958 1.02125 0.93557 0.95910 0.93703 0.93515 0.91068 0.92647 0.75732 0.88164 0.92225 0.88474 0.82061 0.82026 0.82157 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.75 5.45 30.60 0.17 -5.58 16 3 C 0.28 13.80 2.24 44.25 0.10 13.90 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -27.68 8.73 25.60 0.22 -27.46 16 6 H 0.08 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -51.49 11.29 21.45 0.24 -51.24 16 9 Si 0.97 40.82 29.54 68.60 2.03 42.84 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 13 N -0.70 -26.54 4.98 -446.10 -2.22 -28.76 16 14 C 0.50 18.94 5.75 87.66 0.50 19.45 16 15 O -0.57 -27.70 13.64 15.97 0.22 -27.49 16 16 C 0.07 1.87 2.64 29.85 0.08 1.95 16 17 H 0.12 2.47 6.31 -2.38 -0.02 2.45 16 18 C -0.17 -3.27 9.12 71.98 0.66 -2.61 16 19 O -0.31 -9.25 9.34 -73.88 -0.69 -9.94 16 20 C 0.11 2.55 6.60 22.49 0.15 2.69 16 21 C -0.18 -3.32 8.24 22.36 0.18 -3.13 16 22 C -0.11 -1.77 10.02 22.30 0.22 -1.55 16 23 C 0.04 0.77 7.30 22.37 0.16 0.93 16 24 F -0.15 -2.96 17.27 44.97 0.78 -2.19 16 25 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 26 C -0.14 -2.96 9.98 22.36 0.22 -2.74 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 29 H 0.04 1.91 5.64 -2.38 -0.01 1.90 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 32 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.41 12.37 8.32 -92.71 -0.77 11.60 16 34 H 0.10 1.58 7.93 -2.38 -0.02 1.56 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.39 6.91 -2.39 -0.02 1.37 16 37 H 0.16 2.15 5.42 -2.91 -0.02 2.13 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -68.12 333.84 4.60 -63.52 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.30 Total: 22.89 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.96 Total: -9.63 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.98 Total: -80.00 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.47 Total: -37.43 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -68.12 4.60 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.847 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds