Wall clock time and date at job start Tue Mar 31 2020 08:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47638 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99670 * 3 2 1 5 5 C 1.50694 * 109.47646 * 174.99784 * 3 2 1 6 6 H 1.08007 * 119.99744 * 119.99737 * 5 3 2 7 7 C 1.37880 * 120.00130 * 300.00408 * 5 3 2 8 8 N 1.31515 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47115 * 59.99969 * 9 7 5 11 11 H 1.48496 * 109.46925 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46939 * 299.99792 * 9 7 5 13 13 N 1.46499 * 109.47145 * 295.00317 * 3 2 1 14 14 C 1.34777 * 120.00195 * 84.99285 * 13 3 2 15 15 O 1.21703 * 120.00024 * 0.02562 * 14 13 3 16 16 C 1.46588 * 119.99989 * 180.27576 * 14 13 3 17 17 C 1.36647 * 125.45877 * 179.72278 * 16 14 13 18 18 C 1.37470 * 113.29600 * 179.97438 * 17 16 14 19 19 C 1.33819 * 115.10221 * 0.02562 * 18 17 16 20 20 C 1.50696 * 124.51866 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47276 * 60.00414 * 20 19 18 22 22 C 1.53002 * 109.46963 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47256 * 299.99829 * 20 19 18 24 24 S 1.70616 * 110.95252 * 359.72311 * 19 18 17 25 25 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47148 * 300.00364 * 1 2 3 27 27 H 1.09004 * 109.47486 * 59.99773 * 1 2 3 28 28 H 1.08996 * 109.47251 * 239.99744 * 2 1 3 29 29 H 1.09008 * 109.47049 * 120.00022 * 2 1 3 30 30 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00069 * 265.00013 * 13 3 2 32 32 H 1.08001 * 123.35047 * 359.97438 * 17 16 14 33 33 H 1.08004 * 122.44462 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.47571 * 59.99377 * 21 20 19 35 35 H 1.09003 * 109.47686 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.47477 * 299.99366 * 21 20 19 37 37 H 1.09005 * 109.47355 * 59.99768 * 22 20 19 38 38 H 1.08997 * 109.47353 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46983 * 300.00561 * 22 20 19 40 40 H 1.09002 * 109.47371 * 60.00706 * 23 20 19 41 41 H 1.09011 * 109.47156 * 180.02562 * 23 20 19 42 42 H 1.09000 * 109.47474 * 300.00182 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2798 1.3809 11 1 6.3978 0.2166 2.6504 12 1 6.5967 0.1451 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6325 -0.4309 16 6 0.0452 3.3145 -2.6215 17 6 -1.1576 3.9170 -2.8616 18 6 -1.2568 4.4482 -4.1256 19 6 -0.1744 4.2870 -4.8958 20 6 -0.0534 4.7836 -6.3134 21 6 -0.2212 6.3041 -6.3373 22 6 1.3238 4.4132 -6.8677 23 6 -1.1399 4.1369 -7.1749 24 16 1.0528 3.4504 -4.0561 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0612 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.9511 3.9705 -2.1310 33 1 -2.1439 4.9577 -4.4720 34 1 0.5529 6.7648 -5.7236 35 1 -0.1332 6.6634 -7.3627 36 1 -1.2025 6.5676 -5.9427 37 1 1.4430 3.3298 -6.8507 38 1 1.4116 4.7727 -7.8929 39 1 2.0982 4.8735 -6.2540 40 1 -2.1212 4.4004 -6.7803 41 1 -1.0521 4.4957 -8.2005 42 1 -1.0203 3.0536 -7.1579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273910213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:43 Heat of formation + Delta-G solvation = -31.380272 kcal Electronic energy + Delta-G solvation = -21608.755150 eV Core-core repulsion = 18486.535258 eV Total energy + Delta-G solvation = -3122.219892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.23496 -38.53354 -35.96707 -34.89897 -32.40202 -31.04103 -28.90441 -27.67997 -27.50975 -26.94914 -24.75971 -23.01141 -21.19502 -20.49125 -19.45724 -18.76707 -17.49733 -16.34903 -15.73894 -15.28941 -15.01063 -14.74304 -14.42888 -14.25377 -14.14621 -13.48356 -13.02374 -12.89463 -12.75760 -12.60357 -12.35529 -12.02105 -11.95425 -11.84510 -11.50030 -11.43731 -11.24092 -11.18623 -11.16235 -10.98433 -10.81733 -10.57533 -10.33039 -10.17427 -9.62872 -9.18656 -9.04910 -8.50407 -8.49727 -8.44317 -7.83346 -6.12086 -4.21733 0.74773 1.62625 2.07086 2.61572 3.26142 3.31365 3.32579 3.88880 4.07183 4.32114 4.39138 4.59469 4.68851 5.03312 5.19159 5.30741 5.35135 5.40743 5.49656 5.53953 5.54482 5.59976 5.66517 5.72142 5.85156 5.98577 6.03585 6.16666 6.35073 6.40697 6.47841 6.50687 6.67449 7.05813 7.20311 7.35755 7.42234 7.61776 7.72558 7.89641 8.17427 8.62254 8.76241 9.07087 9.45216 10.93297 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.003891 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.600071 B = 7194.824469 C = 7988.500751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.573 3.427 15 O -0.537 6.537 16 C -0.250 4.250 17 C -0.070 4.070 18 C -0.148 4.148 19 C -0.197 4.197 20 C 0.003 3.997 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.136 4.136 24 S 0.201 5.799 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.385 0.615 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 7.976 -18.325 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.349 5.349 14 C 0.357 3.643 15 O -0.417 6.417 16 C -0.370 4.370 17 C -0.103 4.103 18 C -0.180 4.180 19 C -0.317 4.317 20 C 0.001 3.999 21 C -0.194 4.194 22 C -0.212 4.212 23 C -0.194 4.194 24 S 0.470 5.530 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.217 0.783 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.201 7.339 -17.767 19.915 hybrid contribution -0.264 0.465 0.129 0.550 sum -5.465 7.804 -17.638 20.047 Atomic orbital electron populations 1.21850 0.98322 0.98122 1.01279 1.21941 0.92659 0.99671 1.02372 1.18835 0.94331 0.89237 0.80630 0.93062 1.21185 0.90601 1.39257 1.06399 0.92124 1.24874 0.98637 0.94734 0.95312 1.69884 1.35243 1.37456 1.09320 0.86510 0.84802 0.78346 0.77468 1.20153 1.21103 1.20119 1.46444 1.14067 1.55714 1.18672 1.16969 0.83056 0.78925 0.85362 1.90792 1.51641 1.60230 1.39065 1.25117 1.00271 1.11799 0.99849 1.20676 0.96702 0.96212 0.96694 1.19811 0.99570 1.04825 0.93754 1.24200 0.99578 1.06983 1.00905 1.19100 0.96602 0.95800 0.88434 1.21887 1.02386 0.93276 1.01857 1.22016 0.95481 1.02199 1.01533 1.21886 0.97810 1.00883 0.98804 1.83021 1.15878 1.51116 1.02942 0.95759 0.93094 0.94290 0.94978 0.88138 0.92469 0.78258 0.83369 0.84541 0.92263 0.92125 0.92223 0.91866 0.91492 0.91868 0.92228 0.92128 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.94 2.24 -69.09 -0.15 6.78 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.26 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -15.25 5.02 -56.28 -0.28 -15.53 16 14 C 0.57 12.13 6.35 -12.89 -0.08 12.04 16 15 O -0.54 -13.03 13.97 5.19 0.07 -12.96 16 16 C -0.25 -4.24 6.45 -36.79 -0.24 -4.48 16 17 C -0.07 -1.06 10.01 -40.44 -0.40 -1.46 16 18 C -0.15 -1.80 9.18 -41.41 -0.38 -2.18 16 19 C -0.20 -2.28 4.97 -35.86 -0.18 -2.46 16 20 C 0.00 0.02 0.90 -155.66 -0.14 -0.12 16 21 C -0.14 -1.06 8.33 37.15 0.31 -0.76 16 22 C -0.15 -1.27 7.52 37.16 0.28 -0.99 16 23 C -0.14 -1.06 8.33 37.16 0.31 -0.75 16 24 S 0.20 2.67 20.43 -107.50 -2.20 0.48 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.23 7.84 -51.92 -0.41 0.82 16 27 H 0.04 0.88 5.65 -51.93 -0.29 0.58 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.72 5.95 -51.92 -0.31 2.41 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.47 7.65 -40.82 -0.31 7.16 16 32 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.14 1.35 7.90 -52.48 -0.41 0.93 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 37 H 0.06 0.54 7.91 -51.93 -0.41 0.12 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 40 H 0.06 0.45 7.86 -51.93 -0.41 0.04 16 41 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -29.72 349.03 -9.14 -38.85 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.69 Total: 5.75 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.90 Total: -13.35 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.34 Total: -39.62 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.20 Total: 0.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.72 -9.14 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273910213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.473 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds