Wall clock time and date at job start Tue Mar 31 2020 08:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47638 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99670 * 3 2 1 5 5 C 1.50694 * 109.47646 * 174.99784 * 3 2 1 6 6 H 1.08007 * 119.99744 * 119.99737 * 5 3 2 7 7 C 1.37880 * 120.00130 * 300.00408 * 5 3 2 8 8 N 1.31515 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47115 * 59.99969 * 9 7 5 11 11 H 1.48496 * 109.46925 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46939 * 299.99792 * 9 7 5 13 13 N 1.46499 * 109.47145 * 295.00317 * 3 2 1 14 14 C 1.34777 * 120.00195 * 84.99285 * 13 3 2 15 15 O 1.21703 * 120.00024 * 0.02562 * 14 13 3 16 16 C 1.46588 * 119.99989 * 180.27576 * 14 13 3 17 17 C 1.36647 * 125.45877 * 179.72278 * 16 14 13 18 18 C 1.37470 * 113.29600 * 179.97438 * 17 16 14 19 19 C 1.33819 * 115.10221 * 0.02562 * 18 17 16 20 20 C 1.50696 * 124.51866 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47276 * 60.00414 * 20 19 18 22 22 C 1.53002 * 109.46963 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47256 * 299.99829 * 20 19 18 24 24 S 1.70616 * 110.95252 * 359.72311 * 19 18 17 25 25 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47148 * 300.00364 * 1 2 3 27 27 H 1.09004 * 109.47486 * 59.99773 * 1 2 3 28 28 H 1.08996 * 109.47251 * 239.99744 * 2 1 3 29 29 H 1.09008 * 109.47049 * 120.00022 * 2 1 3 30 30 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00069 * 265.00013 * 13 3 2 32 32 H 1.08001 * 123.35047 * 359.97438 * 17 16 14 33 33 H 1.08004 * 122.44462 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.47571 * 59.99377 * 21 20 19 35 35 H 1.09003 * 109.47686 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.47477 * 299.99366 * 21 20 19 37 37 H 1.09005 * 109.47355 * 59.99768 * 22 20 19 38 38 H 1.08997 * 109.47353 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46983 * 300.00561 * 22 20 19 40 40 H 1.09002 * 109.47371 * 60.00706 * 23 20 19 41 41 H 1.09011 * 109.47156 * 180.02562 * 23 20 19 42 42 H 1.09000 * 109.47474 * 300.00182 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2798 1.3809 11 1 6.3978 0.2166 2.6504 12 1 6.5967 0.1451 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3419 2.6325 -0.4309 16 6 0.0452 3.3145 -2.6215 17 6 -1.1576 3.9170 -2.8616 18 6 -1.2568 4.4482 -4.1256 19 6 -0.1744 4.2870 -4.8958 20 6 -0.0534 4.7836 -6.3134 21 6 -0.2212 6.3041 -6.3373 22 6 1.3238 4.4132 -6.8677 23 6 -1.1399 4.1369 -7.1749 24 16 1.0528 3.4504 -4.0561 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0612 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.9511 3.9705 -2.1310 33 1 -2.1439 4.9577 -4.4720 34 1 0.5529 6.7648 -5.7236 35 1 -0.1332 6.6634 -7.3627 36 1 -1.2025 6.5676 -5.9427 37 1 1.4430 3.3298 -6.8507 38 1 1.4116 4.7727 -7.8929 39 1 2.0982 4.8735 -6.2540 40 1 -2.1212 4.4004 -6.7803 41 1 -1.0521 4.4957 -8.2005 42 1 -1.0203 3.0536 -7.1579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273910213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:43 Heat of formation + Delta-G solvation = -48.031873 kcal Electronic energy + Delta-G solvation = -21609.477217 eV Core-core repulsion = 18486.535258 eV Total energy + Delta-G solvation = -3122.941959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80152 -39.58679 -37.20775 -36.53253 -34.35622 -32.94108 -30.21110 -28.81549 -28.28585 -28.08904 -26.04867 -24.87985 -22.76261 -21.44387 -21.29624 -20.23523 -18.73700 -18.02792 -17.28169 -16.72199 -16.47788 -16.33922 -15.77145 -15.28544 -14.96717 -14.91822 -14.62534 -14.21461 -13.97099 -13.70645 -13.50821 -13.46435 -13.18451 -12.95569 -12.88550 -12.76682 -12.66317 -12.54765 -12.33728 -12.20634 -12.08670 -11.91789 -11.87620 -11.61987 -11.46217 -11.10847 -10.90751 -10.54734 -9.83569 -9.57005 -9.45404 -8.17578 -6.35741 -0.42732 0.51323 0.98402 1.44393 1.46591 1.48043 1.54557 2.31342 2.34388 2.57800 3.11695 3.53281 3.91705 4.01371 4.04650 4.27780 4.44065 4.45612 4.53684 4.56508 4.71920 4.74739 4.79589 4.90251 4.95853 5.01018 5.03359 5.04362 5.11262 5.19397 5.23813 5.35255 5.38668 5.40177 5.44641 5.47404 5.50067 5.56519 5.74970 5.87339 6.12707 6.69810 6.86175 7.28209 7.44721 8.87888 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.003891 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.600071 B = 7194.824469 C = 7988.500751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.701 5.701 14 C 0.572 3.428 15 O -0.580 6.580 16 C -0.302 4.302 17 C -0.057 4.057 18 C -0.156 4.156 19 C -0.173 4.173 20 C 0.000 4.000 21 C -0.135 4.135 22 C -0.158 4.158 23 C -0.135 4.135 24 S 0.226 5.774 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.397 0.603 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 8.906 -21.573 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.349 5.349 14 C 0.359 3.641 15 O -0.463 6.463 16 C -0.422 4.422 17 C -0.091 4.091 18 C -0.186 4.186 19 C -0.293 4.293 20 C -0.002 4.002 21 C -0.193 4.193 22 C -0.216 4.216 23 C -0.193 4.193 24 S 0.496 5.504 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.698 8.276 -21.052 23.103 hybrid contribution -0.485 0.259 1.025 1.163 sum -5.184 8.535 -20.027 22.379 Atomic orbital electron populations 1.21684 0.97042 0.99278 1.00154 1.21793 0.93724 0.98962 1.01482 1.18444 0.93938 0.89261 0.80772 0.98105 1.21517 0.91174 1.39476 1.06977 0.91199 1.25769 1.03497 0.94145 0.94813 1.70037 1.37241 1.38054 1.09808 0.85409 0.78821 0.78507 0.77689 1.19656 1.20977 1.18787 1.46196 1.14897 1.56026 1.17815 1.17472 0.82085 0.78075 0.86439 1.90752 1.52605 1.61813 1.41141 1.24700 1.02535 1.15023 0.99983 1.20882 0.95690 0.94825 0.97738 1.19956 1.00950 1.05210 0.92477 1.24751 0.98312 1.04287 1.01994 1.19304 0.97628 0.96726 0.86508 1.21901 1.02336 0.91986 1.03117 1.22066 0.94778 1.01990 1.02744 1.21899 0.97346 1.00363 0.99687 1.82887 1.15544 1.51041 1.00931 0.93272 0.95383 0.94222 0.94065 0.90533 0.92448 0.76892 0.83949 0.81681 0.93084 0.90071 0.91839 0.92286 0.89350 0.92392 0.91845 0.90087 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.51 71.98 0.61 -5.25 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.89 2.24 44.24 0.10 14.99 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -30.03 8.73 25.60 0.22 -29.80 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.71 11.29 21.45 0.24 -52.47 16 9 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -31.53 5.02 -450.17 -2.26 -33.79 16 14 C 0.57 25.21 6.35 86.42 0.55 25.76 16 15 O -0.58 -29.75 13.97 -4.36 -0.06 -29.81 16 16 C -0.30 -10.36 6.45 24.08 0.16 -10.21 16 17 C -0.06 -1.70 10.01 21.72 0.22 -1.48 16 18 C -0.16 -3.45 9.18 21.08 0.19 -3.26 16 19 C -0.17 -3.59 4.97 24.68 0.12 -3.46 16 20 C 0.00 0.01 0.90 -52.93 -0.05 -0.04 16 21 C -0.14 -1.62 8.33 71.98 0.60 -1.02 16 22 C -0.16 -2.09 7.52 71.98 0.54 -1.55 16 23 C -0.13 -1.59 8.33 71.98 0.60 -0.99 16 24 S 0.23 5.74 20.43 -56.49 -1.15 4.59 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.03 1.41 7.84 -2.38 -0.02 1.39 16 27 H 0.04 1.84 5.65 -2.39 -0.01 1.82 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 4.30 5.95 -2.38 -0.01 4.28 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.40 15.66 7.65 -92.71 -0.71 14.95 16 32 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.17 2.70 7.90 -2.91 -0.02 2.68 16 34 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.73 7.86 -2.39 -0.02 0.71 16 37 H 0.06 0.84 7.91 -2.38 -0.02 0.82 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.83 7.90 -2.39 -0.02 0.81 16 40 H 0.06 0.72 7.86 -2.39 -0.02 0.70 16 41 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -66.92 349.03 3.57 -63.35 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.30 Total: 24.65 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.48 Total: -20.87 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.02 Total: -86.26 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.15 Total: 4.59 kcal Total: -66.92 3.57 -63.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273910213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.316 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds