Wall clock time and date at job start Tue Mar 31 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00359 * 2 1 4 4 C 1.53000 * 109.46979 * 305.88309 * 3 2 1 5 5 C 1.50704 * 109.47002 * 185.88541 * 3 2 1 6 6 O 1.21283 * 119.99536 * 215.00083 * 5 3 2 7 7 N 1.34774 * 120.00186 * 35.00042 * 5 3 2 8 8 C 1.46500 * 119.99765 * 359.72652 * 7 5 3 9 9 C 1.46503 * 120.00023 * 179.97438 * 7 5 3 10 10 C 1.50695 * 109.47097 * 269.72858 * 9 7 5 11 11 H 1.07995 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99712 * 180.02562 * 10 9 7 13 13 N 1.31519 * 120.00296 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00087 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46986 * 59.99613 * 14 12 10 16 16 H 1.48501 * 109.47433 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47116 * 300.00218 * 14 12 10 18 18 C 1.50696 * 109.46951 * 65.88580 * 3 2 1 19 19 C 1.38218 * 120.01262 * 5.41150 * 18 3 2 20 20 C 1.38229 * 120.02404 * 179.97438 * 19 18 3 21 21 C 1.38263 * 120.04972 * 0.03056 * 20 19 18 22 22 C 1.38168 * 120.02781 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.01249 * 185.13841 * 18 3 2 24 24 F 1.35103 * 120.02648 * 359.97438 * 23 18 3 25 25 H 1.09003 * 109.47085 * 65.86851 * 1 2 3 26 26 H 1.08990 * 109.47314 * 185.87268 * 1 2 3 27 27 H 1.09002 * 109.46556 * 305.87302 * 1 2 3 28 28 H 1.08996 * 109.47222 * 300.00268 * 4 3 2 29 29 H 1.08998 * 109.47002 * 59.99856 * 4 3 2 30 30 H 1.08997 * 109.47225 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46849 * 270.27240 * 8 7 5 32 32 H 1.08993 * 109.47605 * 30.27502 * 8 7 5 33 33 H 1.09000 * 109.47281 * 150.27979 * 8 7 5 34 34 H 1.09000 * 109.46541 * 29.72629 * 9 7 5 35 35 H 1.09000 * 109.47080 * 149.72132 * 9 7 5 36 36 H 0.97002 * 120.00200 * 180.02562 * 13 12 10 37 37 H 1.08002 * 119.98958 * 0.02562 * 19 18 3 38 38 H 1.07997 * 119.97231 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.98328 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.01623 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4454 2.1153 -1.1687 5 6 3.5058 1.1894 -0.1457 6 8 4.2333 1.9747 0.4244 7 7 4.0347 0.2130 -0.9095 8 6 3.1560 -0.7392 -1.5932 9 6 5.4885 0.1005 -1.0515 10 6 5.9422 0.9168 -2.2342 11 1 5.2200 1.4642 -2.8216 12 6 7.2794 0.9638 -2.5670 13 7 8.1589 0.2968 -1.8520 14 14 7.8419 1.9750 -4.0335 15 1 7.4741 3.3983 -3.8236 16 1 9.3156 1.8611 -4.1774 17 1 7.1833 1.4700 -5.2649 18 6 1.6843 2.0004 1.2968 19 6 1.0237 1.3171 2.3003 20 6 0.7251 1.9542 3.4902 21 6 1.0862 3.2756 3.6776 22 6 1.7466 3.9607 2.6758 23 6 2.0515 3.3218 1.4856 24 9 2.7026 3.9889 0.5077 25 1 -0.3633 0.4202 -0.9379 26 1 -0.3633 -1.0222 0.1051 27 1 -0.3632 0.6022 0.8328 28 1 1.6811 1.6125 -2.1067 29 1 0.3637 2.1991 -1.0634 30 1 1.8884 3.1111 -1.1685 31 1 2.9700 -1.5937 -0.9426 32 1 2.2106 -0.2531 -1.8337 33 1 3.6338 -1.0793 -2.5120 34 1 5.9715 0.4712 -0.1474 35 1 5.7587 -0.9441 -1.2057 36 1 9.0997 0.3302 -2.0859 37 1 0.7414 0.2848 2.1551 38 1 0.2092 1.4194 4.2739 39 1 0.8520 3.7725 4.6075 40 1 2.0282 4.9930 2.8222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277105159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:07 Heat of formation + Delta-G solvation = -75.043189 kcal Electronic energy + Delta-G solvation = -25193.599881 eV Core-core repulsion = 21503.273447 eV Total energy + Delta-G solvation = -3690.326434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.59974 -40.46995 -38.41265 -37.38198 -34.78555 -32.57541 -32.30355 -30.71719 -29.46690 -27.86689 -27.17970 -25.70086 -23.88483 -23.06997 -22.67534 -21.05842 -18.91428 -17.66223 -17.08678 -16.47606 -16.34278 -15.89056 -15.50698 -15.27192 -15.13137 -14.77374 -14.48180 -14.33036 -13.96881 -13.61363 -13.03136 -12.88185 -12.84408 -12.47016 -12.19521 -12.06976 -11.97174 -11.83154 -11.79782 -11.43071 -11.32965 -11.10136 -10.86590 -10.72285 -10.50875 -10.12146 -9.62820 -9.58251 -9.15779 -8.73382 -8.52560 -8.38415 -7.54479 -5.99325 -4.04024 1.15769 1.25177 3.17176 3.35227 3.39352 3.42657 3.55974 3.81620 4.04345 4.40521 4.48371 4.55452 4.80605 4.87204 5.06452 5.07600 5.25300 5.26981 5.31406 5.34806 5.40524 5.57073 5.67781 5.71783 5.81054 5.94850 6.07447 6.13754 6.20576 6.24480 6.29257 6.36952 6.48694 6.91827 7.00910 7.13268 7.49229 7.60853 7.96924 8.28261 8.46626 8.92797 9.10291 9.60580 11.08698 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.005131 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.511648 B = 5456.051538 C = 6048.224289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.357 6.357 3 C 0.144 3.856 4 C -0.181 4.181 5 C 0.525 3.475 6 O -0.524 6.524 7 N -0.586 5.586 8 C 0.092 3.908 9 C 0.245 3.755 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.135 4.135 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.164 4.164 23 C 0.145 3.855 24 F -0.120 7.120 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 1.198 7.129 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.276 6.276 3 C 0.101 3.899 4 C -0.238 4.238 5 C 0.308 3.692 6 O -0.400 6.400 7 N -0.317 5.317 8 C -0.052 4.052 9 C 0.126 3.874 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.137 4.137 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.108 4.108 22 C -0.183 4.183 23 C 0.125 3.875 24 F -0.099 7.099 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.008 1.398 7.375 20.436 hybrid contribution 0.326 0.788 -1.010 1.322 sum -18.682 2.186 6.365 19.857 Atomic orbital electron populations 1.23082 0.81852 1.02943 1.01048 1.88226 1.19525 1.25336 1.94501 1.20487 0.93331 0.83974 0.92150 1.22508 1.01358 1.02322 0.97654 1.19479 0.87066 0.82225 0.80404 1.90723 1.59919 1.41546 1.47860 1.48031 1.09570 1.28161 1.45933 1.21752 0.93872 0.92773 0.96814 1.19322 0.72722 0.97287 0.98073 1.21381 0.92722 1.29677 1.12573 0.92524 1.24927 0.96448 0.95670 0.97011 1.69928 1.02188 1.41926 1.39388 0.86566 0.77423 0.80864 0.82617 1.20182 1.21174 1.20247 1.20061 1.02596 0.93353 0.97695 1.21017 0.96732 1.00181 0.92019 1.21101 1.02316 0.95155 0.97443 1.20979 0.97024 0.94530 0.98226 1.21130 1.02780 1.01394 0.92978 1.17381 0.93531 0.89873 0.86666 1.91524 1.78226 1.79811 1.60297 0.93491 0.89270 0.92842 0.90342 0.91276 0.89573 0.93380 0.91424 0.91839 0.93900 0.94848 0.92698 0.84314 0.85471 0.85274 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.18 101.05 0.93 0.99 16 2 O -0.36 -5.12 6.04 -35.23 -0.21 -5.33 16 3 C 0.14 2.42 0.43 -92.92 -0.04 2.38 16 4 C -0.18 -2.70 7.59 37.16 0.28 -2.41 16 5 C 0.52 11.80 6.53 -10.98 -0.07 11.73 16 6 O -0.52 -13.85 13.71 5.55 0.08 -13.77 16 7 N -0.59 -13.40 2.86 -182.96 -0.52 -13.92 16 8 C 0.09 1.63 9.03 59.85 0.54 2.17 16 9 C 0.24 6.71 5.16 -5.19 -0.03 6.68 16 10 C -0.52 -15.32 9.39 -34.44 -0.32 -15.65 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.14 -2.16 4.29 -104.56 -0.45 -2.60 16 19 C -0.08 -1.05 7.66 -39.59 -0.30 -1.36 16 20 C -0.14 -1.54 10.04 -39.58 -0.40 -1.94 16 21 C -0.09 -0.98 10.04 -39.60 -0.40 -1.38 16 22 C -0.16 -2.19 10.03 -39.52 -0.40 -2.58 16 23 C 0.15 2.41 6.18 -39.42 -0.24 2.17 16 24 F -0.12 -2.31 13.17 2.25 0.03 -2.28 16 25 H 0.05 0.42 6.69 -51.93 -0.35 0.07 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.49 5.18 -51.93 -0.27 0.22 16 28 H 0.08 1.15 6.85 -51.93 -0.36 0.80 16 29 H 0.07 0.81 6.61 -51.93 -0.34 0.47 16 30 H 0.09 1.42 5.92 -51.93 -0.31 1.11 16 31 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 32 H 0.07 1.05 4.53 -51.93 -0.24 0.82 16 33 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.04 1.32 7.41 -51.93 -0.38 0.93 16 35 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.14 1.58 5.70 -52.49 -0.30 1.28 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -34.69 322.31 -6.08 -40.77 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.03 Total: -1.07 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.00 Total: -0.08 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.21 Total: -40.40 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.14 Total: -19.10 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.69 -6.08 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277105159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.278 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds