Wall clock time and date at job start Tue Mar 31 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00359 * 2 1 4 4 C 1.53000 * 109.46979 * 305.88309 * 3 2 1 5 5 C 1.50704 * 109.47002 * 185.88541 * 3 2 1 6 6 O 1.21283 * 119.99536 * 215.00083 * 5 3 2 7 7 N 1.34774 * 120.00186 * 35.00042 * 5 3 2 8 8 C 1.46500 * 119.99765 * 359.72652 * 7 5 3 9 9 C 1.46503 * 120.00023 * 179.97438 * 7 5 3 10 10 C 1.50695 * 109.47097 * 269.72858 * 9 7 5 11 11 H 1.07995 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99712 * 180.02562 * 10 9 7 13 13 N 1.31519 * 120.00296 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00087 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46986 * 59.99613 * 14 12 10 16 16 H 1.48501 * 109.47433 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47116 * 300.00218 * 14 12 10 18 18 C 1.50696 * 109.46951 * 65.88580 * 3 2 1 19 19 C 1.38218 * 120.01262 * 5.41150 * 18 3 2 20 20 C 1.38229 * 120.02404 * 179.97438 * 19 18 3 21 21 C 1.38263 * 120.04972 * 0.03056 * 20 19 18 22 22 C 1.38168 * 120.02781 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.01249 * 185.13841 * 18 3 2 24 24 F 1.35103 * 120.02648 * 359.97438 * 23 18 3 25 25 H 1.09003 * 109.47085 * 65.86851 * 1 2 3 26 26 H 1.08990 * 109.47314 * 185.87268 * 1 2 3 27 27 H 1.09002 * 109.46556 * 305.87302 * 1 2 3 28 28 H 1.08996 * 109.47222 * 300.00268 * 4 3 2 29 29 H 1.08998 * 109.47002 * 59.99856 * 4 3 2 30 30 H 1.08997 * 109.47225 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46849 * 270.27240 * 8 7 5 32 32 H 1.08993 * 109.47605 * 30.27502 * 8 7 5 33 33 H 1.09000 * 109.47281 * 150.27979 * 8 7 5 34 34 H 1.09000 * 109.46541 * 29.72629 * 9 7 5 35 35 H 1.09000 * 109.47080 * 149.72132 * 9 7 5 36 36 H 0.97002 * 120.00200 * 180.02562 * 13 12 10 37 37 H 1.08002 * 119.98958 * 0.02562 * 19 18 3 38 38 H 1.07997 * 119.97231 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.98328 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.01623 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4454 2.1153 -1.1687 5 6 3.5058 1.1894 -0.1457 6 8 4.2333 1.9747 0.4244 7 7 4.0347 0.2130 -0.9095 8 6 3.1560 -0.7392 -1.5932 9 6 5.4885 0.1005 -1.0515 10 6 5.9422 0.9168 -2.2342 11 1 5.2200 1.4642 -2.8216 12 6 7.2794 0.9638 -2.5670 13 7 8.1589 0.2968 -1.8520 14 14 7.8419 1.9750 -4.0335 15 1 7.4741 3.3983 -3.8236 16 1 9.3156 1.8611 -4.1774 17 1 7.1833 1.4700 -5.2649 18 6 1.6843 2.0004 1.2968 19 6 1.0237 1.3171 2.3003 20 6 0.7251 1.9542 3.4902 21 6 1.0862 3.2756 3.6776 22 6 1.7466 3.9607 2.6758 23 6 2.0515 3.3218 1.4856 24 9 2.7026 3.9889 0.5077 25 1 -0.3633 0.4202 -0.9379 26 1 -0.3633 -1.0222 0.1051 27 1 -0.3632 0.6022 0.8328 28 1 1.6811 1.6125 -2.1067 29 1 0.3637 2.1991 -1.0634 30 1 1.8884 3.1111 -1.1685 31 1 2.9700 -1.5937 -0.9426 32 1 2.2106 -0.2531 -1.8337 33 1 3.6338 -1.0793 -2.5120 34 1 5.9715 0.4712 -0.1474 35 1 5.7587 -0.9441 -1.2057 36 1 9.0997 0.3302 -2.0859 37 1 0.7414 0.2848 2.1551 38 1 0.2092 1.4194 4.2739 39 1 0.8520 3.7725 4.6075 40 1 2.0282 4.9930 2.8222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277105159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:06 Heat of formation + Delta-G solvation = -97.974126 kcal Electronic energy + Delta-G solvation = -25194.594241 eV Core-core repulsion = 21503.273447 eV Total energy + Delta-G solvation = -3691.320794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.86481 -41.77264 -39.76414 -38.59084 -36.65179 -34.69967 -33.51240 -31.71743 -30.65229 -29.69136 -28.26855 -27.31644 -25.47536 -24.54694 -23.69221 -22.43669 -20.41987 -18.78545 -18.69256 -18.42853 -17.67128 -17.12672 -16.89109 -16.68840 -16.46091 -16.22683 -15.85032 -15.72303 -15.27450 -15.00709 -14.41402 -14.28824 -14.02068 -13.84400 -13.68169 -13.47769 -13.35836 -13.32329 -13.00262 -12.94140 -12.79673 -12.57731 -12.43720 -12.33787 -12.19211 -11.76665 -11.74347 -10.76856 -10.66434 -10.61863 -9.88084 -9.59852 -9.42871 -8.23999 -6.39404 0.14813 0.25631 1.34162 1.39365 1.46422 1.61116 2.20866 2.39705 2.66639 2.68404 3.05044 3.31163 3.43795 3.62681 3.80766 3.89351 4.13163 4.37140 4.38518 4.44157 4.52054 4.54750 4.58319 4.67503 4.79765 4.83328 4.89152 4.97368 5.01866 5.09226 5.13686 5.17591 5.20707 5.34738 5.43685 5.53703 5.81057 5.95258 6.00740 6.03370 6.65181 6.72440 7.22874 7.38937 8.83170 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.005131 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.511648 B = 5456.051538 C = 6048.224289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.369 6.369 3 C 0.161 3.839 4 C -0.177 4.177 5 C 0.511 3.489 6 O -0.576 6.576 7 N -0.596 5.596 8 C 0.092 3.908 9 C 0.260 3.740 10 C -0.543 4.543 11 H 0.052 0.948 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.969 3.031 15 H -0.279 1.279 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.159 4.159 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.173 4.173 23 C 0.102 3.898 24 F -0.149 7.149 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.058 0.942 34 H -0.004 1.004 35 H 0.025 0.975 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.631 0.828 7.599 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.288 6.288 3 C 0.117 3.883 4 C -0.234 4.234 5 C 0.297 3.703 6 O -0.456 6.456 7 N -0.326 5.326 8 C -0.049 4.049 9 C 0.139 3.861 10 C -0.582 4.582 11 H 0.070 0.930 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.205 1.205 16 H -0.200 1.200 17 H -0.182 1.182 18 C -0.160 4.160 19 C -0.103 4.103 20 C -0.148 4.148 21 C -0.098 4.098 22 C -0.191 4.191 23 C 0.083 3.917 24 F -0.127 7.127 25 H 0.077 0.923 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.014 0.986 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.919 0.996 7.833 23.298 hybrid contribution 1.137 0.852 -1.017 1.748 sum -20.782 1.848 6.816 21.949 Atomic orbital electron populations 1.23409 0.78986 1.05081 1.02153 1.88172 1.22369 1.23573 1.94693 1.19990 0.89110 0.85447 0.93728 1.22492 1.03358 1.00677 0.96891 1.20563 0.89888 0.80825 0.78980 1.90672 1.62190 1.43218 1.49560 1.48085 1.08244 1.29548 1.46736 1.21962 0.93898 0.92568 0.96510 1.18790 0.75863 0.96029 0.95441 1.21620 0.93259 1.30169 1.13131 0.93006 1.25873 0.96409 0.96675 1.00096 1.70051 1.02633 1.43044 1.41033 0.85459 0.77463 0.78586 0.79253 1.20492 1.20009 1.18245 1.20140 1.04361 0.93336 0.98204 1.21310 0.96197 1.00825 0.91978 1.21607 1.00785 0.95129 0.97287 1.21475 0.94988 0.94662 0.98637 1.21436 1.02983 1.02250 0.92480 1.17929 0.95315 0.90914 0.87580 1.91444 1.79257 1.80408 1.61637 0.92312 0.86511 0.91877 0.90465 0.87662 0.91876 0.91598 0.88735 0.92290 0.98617 0.95750 0.92310 0.82693 0.81461 0.81377 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.18 113.37 1.04 1.02 16 2 O -0.37 -9.84 6.04 -148.98 -0.90 -10.74 16 3 C 0.16 5.38 0.43 -12.29 -0.01 5.38 16 4 C -0.18 -5.21 7.59 71.98 0.55 -4.67 16 5 C 0.51 23.97 6.53 87.66 0.57 24.54 16 6 O -0.58 -32.55 13.71 -3.04 -0.04 -32.60 16 7 N -0.60 -28.28 2.86 -851.14 -2.43 -30.71 16 8 C 0.09 3.27 9.03 127.77 1.15 4.43 16 9 C 0.26 15.06 5.16 85.63 0.44 15.50 16 10 C -0.54 -32.97 9.39 25.60 0.24 -32.73 16 11 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 14 Si 0.97 46.49 29.54 68.60 2.03 48.51 16 15 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 18 C -0.16 -4.98 4.29 -19.82 -0.09 -5.07 16 19 C -0.09 -1.99 7.66 22.26 0.17 -1.82 16 20 C -0.13 -2.31 10.04 22.27 0.22 -2.09 16 21 C -0.08 -1.48 10.04 22.26 0.22 -1.26 16 22 C -0.17 -4.47 10.03 22.31 0.22 -4.25 16 23 C 0.10 3.47 6.18 22.38 0.14 3.61 16 24 F -0.15 -6.12 13.17 44.97 0.59 -5.52 16 25 H 0.06 0.82 6.69 -2.39 -0.02 0.81 16 26 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 0.92 5.18 -2.39 -0.01 0.91 16 28 H 0.08 2.23 6.85 -2.39 -0.02 2.21 16 29 H 0.10 2.26 6.61 -2.39 -0.02 2.25 16 30 H 0.06 2.17 5.92 -2.39 -0.01 2.16 16 31 H 0.07 2.09 7.88 -2.39 -0.02 2.07 16 32 H 0.09 2.82 4.53 -2.39 -0.01 2.81 16 33 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 34 H 0.00 -0.29 7.41 -2.39 -0.02 -0.30 16 35 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.16 3.01 5.70 -2.91 -0.02 2.99 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -81.51 322.31 5.94 -75.57 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.06 Total: 9.70 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.35 Total: 3.57 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -2.15 Total: -88.49 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.94 Total: -43.34 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.59 Total: -5.52 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -81.51 5.94 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277105159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.402 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds