Wall clock time and date at job start Tue Mar 31 2020 06:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.53004 * 109.46937 * 54.66135 * 3 2 1 5 5 C 1.50692 * 109.47220 * 174.66782 * 3 2 1 6 6 O 1.21281 * 119.99839 * 145.00260 * 5 3 2 7 7 N 1.34779 * 119.99994 * 324.99358 * 5 3 2 8 8 C 1.46500 * 120.00056 * 0.02562 * 7 5 3 9 9 C 1.46504 * 119.99914 * 180.02562 * 7 5 3 10 10 C 1.50695 * 109.47288 * 90.00250 * 9 7 5 11 11 H 1.08000 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00030 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00240 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47070 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47147 * 119.99767 * 14 12 10 17 17 H 1.48496 * 109.47170 * 239.99860 * 14 12 10 18 18 C 1.50701 * 109.46853 * 294.66828 * 3 2 1 19 19 C 1.38219 * 120.01548 * 355.03838 * 18 3 2 20 20 C 1.38228 * 120.02851 * 179.97438 * 19 18 3 21 21 C 1.38265 * 120.04880 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02409 * 0.02562 * 21 20 19 23 23 C 1.38437 * 120.01238 * 175.27743 * 18 3 2 24 24 F 1.35095 * 120.02857 * 0.03523 * 23 18 3 25 25 H 1.09003 * 109.47227 * 171.60569 * 1 2 3 26 26 H 1.09007 * 109.47044 * 291.59799 * 1 2 3 27 27 H 1.08991 * 109.47522 * 51.60104 * 1 2 3 28 28 H 1.08995 * 109.47768 * 300.00394 * 4 3 2 29 29 H 1.09001 * 109.46819 * 60.00639 * 4 3 2 30 30 H 1.09005 * 109.46787 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.46867 * 89.99598 * 8 7 5 32 32 H 1.08991 * 109.47268 * 209.99480 * 8 7 5 33 33 H 1.08999 * 109.47109 * 330.00370 * 8 7 5 34 34 H 1.09006 * 109.46819 * 210.00681 * 9 7 5 35 35 H 1.09000 * 109.47127 * 329.99775 * 9 7 5 36 36 H 0.96999 * 120.00365 * 179.97438 * 13 12 10 37 37 H 1.08009 * 119.98293 * 359.95688 * 19 18 3 38 38 H 1.08001 * 119.96932 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.98338 * 180.02562 * 21 20 19 40 40 H 1.08008 * 120.00649 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4554 2.1107 1.1768 5 6 3.5068 1.1889 0.1320 6 8 4.2293 1.9765 -0.4413 7 7 4.0425 0.2096 0.8874 8 6 3.1698 -0.7419 1.5796 9 6 5.4975 0.0967 1.0162 10 6 5.9625 0.9138 2.1940 11 1 5.2459 1.4626 2.7870 12 6 7.3026 0.9606 2.5144 13 7 8.1751 0.2918 1.7926 14 14 7.8789 1.9728 3.9749 15 1 6.7095 2.6236 4.6184 16 1 8.5535 1.0859 4.9566 17 1 8.8318 3.0130 3.5110 18 6 1.6728 2.0055 -1.2912 19 6 0.9951 1.3289 -2.2879 20 6 0.6850 1.9709 -3.4721 21 6 1.0518 3.2906 -3.6608 22 6 1.7293 3.9690 -2.6658 23 6 2.0458 3.3250 -1.4814 24 9 2.7131 3.9857 -0.5102 25 1 -0.3634 -1.0167 -0.1500 26 1 -0.3633 0.3783 0.9556 27 1 -0.3634 0.6382 -0.8053 28 1 0.3730 2.1950 1.0813 29 1 1.6995 1.6043 2.1107 30 1 1.8985 3.1066 1.1765 31 1 2.9779 -1.5969 0.9313 32 1 3.6556 -1.0814 2.4943 33 1 2.2266 -0.2555 1.8281 34 1 5.7687 -0.9480 1.1688 35 1 5.9725 0.4663 0.1074 36 1 9.1180 0.3251 2.0178 37 1 0.7081 0.2980 -2.1415 38 1 0.1551 1.4415 -4.2501 39 1 0.8086 3.7913 -4.5863 40 1 2.0153 5.0000 -2.8134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277105161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:09 Heat of formation + Delta-G solvation = -74.941884 kcal Electronic energy + Delta-G solvation = -25197.516940 eV Core-core repulsion = 21507.194898 eV Total energy + Delta-G solvation = -3690.322041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.59513 -40.47646 -38.41445 -37.38008 -34.78654 -32.57912 -32.30322 -30.72380 -29.47103 -27.86002 -27.17658 -25.70384 -23.89124 -23.07319 -22.67787 -21.06011 -18.91397 -17.65859 -17.08820 -16.47949 -16.34857 -15.88885 -15.50247 -15.27038 -15.12822 -14.77272 -14.47998 -14.32792 -13.96800 -13.60846 -13.02671 -12.87531 -12.84747 -12.47119 -12.20143 -12.07229 -11.98571 -11.83464 -11.80488 -11.43366 -11.33274 -11.11193 -10.83997 -10.71601 -10.53601 -10.12377 -9.62817 -9.55086 -9.15729 -8.73477 -8.52519 -8.39373 -7.54375 -5.99806 -4.04325 1.15566 1.25072 3.17246 3.32812 3.40141 3.44305 3.55946 3.81507 4.04206 4.40411 4.48169 4.55487 4.80319 4.87092 5.06423 5.07633 5.25165 5.26573 5.31594 5.34582 5.40596 5.57046 5.67488 5.71775 5.80897 5.94690 6.07414 6.13668 6.20458 6.24445 6.29051 6.36741 6.48675 6.91752 7.00842 7.13115 7.49228 7.60970 7.96767 8.27989 8.46530 8.92976 9.10394 9.60468 11.08309 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.005136 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.705692 B = 5450.284200 C = 6046.487702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.357 6.357 3 C 0.144 3.856 4 C -0.180 4.180 5 C 0.525 3.475 6 O -0.524 6.524 7 N -0.586 5.586 8 C 0.091 3.909 9 C 0.244 3.756 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.136 4.136 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.164 4.164 23 C 0.146 3.854 24 F -0.120 7.120 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 1.240 -6.963 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.276 6.276 3 C 0.101 3.899 4 C -0.238 4.238 5 C 0.308 3.692 6 O -0.400 6.400 7 N -0.317 5.317 8 C -0.052 4.052 9 C 0.125 3.875 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.137 4.137 19 C -0.100 4.100 20 C -0.160 4.160 21 C -0.107 4.107 22 C -0.183 4.183 23 C 0.126 3.874 24 F -0.098 7.098 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.118 1.442 -7.212 20.484 hybrid contribution 0.358 0.779 0.997 1.315 sum -18.760 2.221 -6.215 19.887 Atomic orbital electron populations 1.23091 0.81862 1.02929 1.01061 1.88226 1.19516 1.25332 1.94510 1.20488 0.93311 0.83949 0.92193 1.22503 1.01390 1.02318 0.97570 1.19475 0.87041 0.82225 0.80427 1.90722 1.60308 1.41460 1.47541 1.48033 1.09524 1.28044 1.46096 1.21752 0.93972 0.92792 0.96703 1.19333 0.72673 0.97309 0.98158 1.21459 0.92648 1.29436 1.12649 0.92414 1.24931 0.96504 0.95692 0.96986 1.69946 1.02233 1.41970 1.39287 0.86450 0.78729 0.80032 0.82260 1.19800 1.20980 1.20881 1.20062 1.02498 0.93409 0.97780 1.21026 0.96687 1.00195 0.92085 1.21101 1.02301 0.95148 0.97478 1.20981 0.96964 0.94574 0.98230 1.21134 1.02654 1.01393 0.93117 1.17377 0.93235 0.89953 0.86841 1.91525 1.77459 1.80109 1.60736 0.89304 0.93534 0.92747 0.91297 0.90340 0.89617 0.93374 0.91839 0.91419 0.94827 0.93901 0.92810 0.84303 0.85468 0.85273 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.06 101.05 0.92 0.98 16 2 O -0.36 -5.12 6.08 -35.23 -0.21 -5.33 16 3 C 0.14 2.42 0.43 -92.92 -0.04 2.38 16 4 C -0.18 -2.69 7.62 37.16 0.28 -2.41 16 5 C 0.52 11.80 6.52 -10.99 -0.07 11.73 16 6 O -0.52 -13.83 13.67 5.56 0.08 -13.75 16 7 N -0.59 -13.40 2.86 -182.96 -0.52 -13.92 16 8 C 0.09 1.63 9.03 59.85 0.54 2.17 16 9 C 0.24 6.69 5.16 -5.19 -0.03 6.66 16 10 C -0.52 -15.27 9.39 -34.45 -0.32 -15.60 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 18 C -0.14 -2.16 4.29 -104.55 -0.45 -2.61 16 19 C -0.08 -1.06 7.64 -39.59 -0.30 -1.36 16 20 C -0.14 -1.54 10.04 -39.57 -0.40 -1.94 16 21 C -0.09 -0.98 10.04 -39.59 -0.40 -1.37 16 22 C -0.16 -2.19 10.03 -39.51 -0.40 -2.59 16 23 C 0.15 2.42 6.18 -39.42 -0.24 2.18 16 24 F -0.12 -2.31 13.15 2.25 0.03 -2.28 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.41 6.85 -51.93 -0.36 0.06 16 27 H 0.05 0.50 5.13 -51.93 -0.27 0.23 16 28 H 0.07 0.81 6.67 -51.93 -0.35 0.46 16 29 H 0.08 1.16 6.84 -51.93 -0.36 0.80 16 30 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 31 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.07 1.05 4.52 -51.93 -0.23 0.82 16 34 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.14 1.58 5.66 -52.48 -0.30 1.28 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -34.73 322.31 -6.10 -40.83 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.03 Total: -1.16 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.01 Total: -0.08 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.21 Total: -40.39 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.14 Total: -19.09 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.73 -6.10 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277105161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.117 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds