Wall clock time and date at job start Tue Mar 31 2020 06:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.53004 * 109.46937 * 54.66135 * 3 2 1 5 5 C 1.50692 * 109.47220 * 174.66782 * 3 2 1 6 6 O 1.21281 * 119.99839 * 145.00260 * 5 3 2 7 7 N 1.34779 * 119.99994 * 324.99358 * 5 3 2 8 8 C 1.46500 * 120.00056 * 0.02562 * 7 5 3 9 9 C 1.46504 * 119.99914 * 180.02562 * 7 5 3 10 10 C 1.50695 * 109.47288 * 90.00250 * 9 7 5 11 11 H 1.08000 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00030 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00240 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47070 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47147 * 119.99767 * 14 12 10 17 17 H 1.48496 * 109.47170 * 239.99860 * 14 12 10 18 18 C 1.50701 * 109.46853 * 294.66828 * 3 2 1 19 19 C 1.38219 * 120.01548 * 355.03838 * 18 3 2 20 20 C 1.38228 * 120.02851 * 179.97438 * 19 18 3 21 21 C 1.38265 * 120.04880 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02409 * 0.02562 * 21 20 19 23 23 C 1.38437 * 120.01238 * 175.27743 * 18 3 2 24 24 F 1.35095 * 120.02857 * 0.03523 * 23 18 3 25 25 H 1.09003 * 109.47227 * 171.60569 * 1 2 3 26 26 H 1.09007 * 109.47044 * 291.59799 * 1 2 3 27 27 H 1.08991 * 109.47522 * 51.60104 * 1 2 3 28 28 H 1.08995 * 109.47768 * 300.00394 * 4 3 2 29 29 H 1.09001 * 109.46819 * 60.00639 * 4 3 2 30 30 H 1.09005 * 109.46787 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.46867 * 89.99598 * 8 7 5 32 32 H 1.08991 * 109.47268 * 209.99480 * 8 7 5 33 33 H 1.08999 * 109.47109 * 330.00370 * 8 7 5 34 34 H 1.09006 * 109.46819 * 210.00681 * 9 7 5 35 35 H 1.09000 * 109.47127 * 329.99775 * 9 7 5 36 36 H 0.96999 * 120.00365 * 179.97438 * 13 12 10 37 37 H 1.08009 * 119.98293 * 359.95688 * 19 18 3 38 38 H 1.08001 * 119.96932 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.98338 * 180.02562 * 21 20 19 40 40 H 1.08008 * 120.00649 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4554 2.1107 1.1768 5 6 3.5068 1.1889 0.1320 6 8 4.2293 1.9765 -0.4413 7 7 4.0425 0.2096 0.8874 8 6 3.1698 -0.7419 1.5796 9 6 5.4975 0.0967 1.0162 10 6 5.9625 0.9138 2.1940 11 1 5.2459 1.4626 2.7870 12 6 7.3026 0.9606 2.5144 13 7 8.1751 0.2918 1.7926 14 14 7.8789 1.9728 3.9749 15 1 6.7095 2.6236 4.6184 16 1 8.5535 1.0859 4.9566 17 1 8.8318 3.0130 3.5110 18 6 1.6728 2.0055 -1.2912 19 6 0.9951 1.3289 -2.2879 20 6 0.6850 1.9709 -3.4721 21 6 1.0518 3.2906 -3.6608 22 6 1.7293 3.9690 -2.6658 23 6 2.0458 3.3250 -1.4814 24 9 2.7131 3.9857 -0.5102 25 1 -0.3634 -1.0167 -0.1500 26 1 -0.3633 0.3783 0.9556 27 1 -0.3634 0.6382 -0.8053 28 1 0.3730 2.1950 1.0813 29 1 1.6995 1.6043 2.1107 30 1 1.8985 3.1066 1.1765 31 1 2.9779 -1.5969 0.9313 32 1 3.6556 -1.0814 2.4943 33 1 2.2266 -0.2555 1.8281 34 1 5.7687 -0.9480 1.1688 35 1 5.9725 0.4663 0.1074 36 1 9.1180 0.3251 2.0178 37 1 0.7081 0.2980 -2.1415 38 1 0.1551 1.4415 -4.2501 39 1 0.8086 3.7913 -4.5863 40 1 2.0153 5.0000 -2.8134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277105161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:09 Heat of formation + Delta-G solvation = -97.905799 kcal Electronic energy + Delta-G solvation = -25198.512730 eV Core-core repulsion = 21507.194898 eV Total energy + Delta-G solvation = -3691.317831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85989 -41.77674 -39.76788 -38.58607 -36.65219 -34.70348 -33.51212 -31.72301 -30.65542 -29.68884 -28.26112 -27.31872 -25.48246 -24.55084 -23.69292 -22.43720 -20.41872 -18.78367 -18.69715 -18.42927 -17.67417 -17.12347 -16.89096 -16.68466 -16.45822 -16.21740 -15.85100 -15.72257 -15.27186 -15.00594 -14.42062 -14.29059 -14.02363 -13.83736 -13.67825 -13.47926 -13.36003 -13.32195 -12.98642 -12.96004 -12.81064 -12.58619 -12.44011 -12.34071 -12.21306 -11.76181 -11.70294 -10.76446 -10.67385 -10.62373 -9.87775 -9.59738 -9.42792 -8.24503 -6.39738 0.14803 0.25672 1.33920 1.36763 1.48616 1.61217 2.20964 2.39357 2.66768 2.68222 3.04647 3.31024 3.44047 3.62536 3.80839 3.89349 4.13221 4.37180 4.38540 4.44169 4.52033 4.54232 4.58666 4.67359 4.79710 4.83210 4.89117 4.97270 5.01560 5.09145 5.13748 5.17610 5.20722 5.34691 5.43675 5.53930 5.80991 5.95301 6.00740 6.03116 6.65278 6.72544 7.22810 7.38899 8.83069 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.005136 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.705692 B = 5450.284200 C = 6046.487702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.369 6.369 3 C 0.160 3.840 4 C -0.176 4.176 5 C 0.511 3.489 6 O -0.576 6.576 7 N -0.596 5.596 8 C 0.092 3.908 9 C 0.259 3.741 10 C -0.541 4.541 11 H 0.051 0.949 12 C 0.008 3.992 13 N -0.928 5.928 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.266 1.266 17 H -0.281 1.281 18 C -0.159 4.159 19 C -0.086 4.086 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.173 4.173 23 C 0.102 3.898 24 F -0.149 7.149 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.025 0.975 35 H -0.004 1.004 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 0.889 -7.453 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.288 6.288 3 C 0.117 3.883 4 C -0.234 4.234 5 C 0.297 3.703 6 O -0.456 6.456 7 N -0.326 5.326 8 C -0.050 4.050 9 C 0.138 3.862 10 C -0.580 4.580 11 H 0.070 0.930 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.793 3.207 15 H -0.192 1.192 16 H -0.191 1.191 17 H -0.206 1.206 18 C -0.161 4.161 19 C -0.103 4.103 20 C -0.148 4.148 21 C -0.098 4.098 22 C -0.192 4.192 23 C 0.083 3.917 24 F -0.127 7.127 25 H 0.135 0.865 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.186 0.814 39 H 0.186 0.814 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.014 1.061 -7.691 23.343 hybrid contribution 1.166 0.837 1.013 1.756 sum -20.848 1.897 -6.678 21.973 Atomic orbital electron populations 1.23417 0.78993 1.05047 1.02195 1.88172 1.22366 1.23572 1.94705 1.19992 0.89088 0.85418 0.93778 1.22486 1.03404 1.00676 0.96786 1.20558 0.89870 0.80830 0.78999 1.90672 1.62563 1.43119 1.49237 1.48087 1.08188 1.29435 1.46916 1.21962 0.94003 0.92593 0.96394 1.18800 0.75828 0.96051 0.95497 1.21674 0.93162 1.29942 1.13188 0.93042 1.25873 0.96491 0.96705 1.00024 1.70061 1.02745 1.43059 1.40943 0.85345 0.78243 0.78423 0.78663 1.19207 1.19053 1.20650 1.20141 1.04265 0.93383 0.98302 1.21321 0.96127 1.00860 0.92030 1.21608 1.00821 0.95094 0.97290 1.21477 0.94941 0.94721 0.98611 1.21439 1.02882 1.02231 0.92620 1.17926 0.94982 0.91016 0.87781 1.91444 1.78515 1.80702 1.62070 0.86537 0.92324 0.91808 0.87679 0.90497 0.91916 0.91584 0.92282 0.88752 0.95723 0.98596 0.92319 0.82651 0.81446 0.81379 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.06 113.37 1.03 1.00 16 2 O -0.37 -9.85 6.08 -148.98 -0.91 -10.76 16 3 C 0.16 5.38 0.43 -12.29 -0.01 5.38 16 4 C -0.18 -5.20 7.62 71.98 0.55 -4.65 16 5 C 0.51 23.97 6.52 87.65 0.57 24.54 16 6 O -0.58 -32.49 13.67 -3.03 -0.04 -32.53 16 7 N -0.60 -28.30 2.86 -851.14 -2.43 -30.73 16 8 C 0.09 3.27 9.03 127.77 1.15 4.43 16 9 C 0.26 15.03 5.16 85.63 0.44 15.47 16 10 C -0.54 -32.86 9.39 25.60 0.24 -32.62 16 11 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 12 C 0.01 0.48 5.46 84.65 0.46 0.94 16 13 N -0.93 -58.06 13.29 21.44 0.28 -57.78 16 14 Si 0.97 46.57 29.54 68.60 2.03 48.60 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C -0.16 -4.99 4.29 -19.82 -0.08 -5.08 16 19 C -0.09 -1.99 7.64 22.26 0.17 -1.82 16 20 C -0.13 -2.30 10.04 22.27 0.22 -2.08 16 21 C -0.08 -1.47 10.04 22.26 0.22 -1.25 16 22 C -0.17 -4.48 10.03 22.31 0.22 -4.25 16 23 C 0.10 3.48 6.18 22.38 0.14 3.62 16 24 F -0.15 -6.12 13.15 44.97 0.59 -5.53 16 25 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 0.82 6.85 -2.38 -0.02 0.80 16 27 H 0.06 0.93 5.13 -2.39 -0.01 0.92 16 28 H 0.10 2.27 6.67 -2.39 -0.02 2.25 16 29 H 0.08 2.23 6.84 -2.39 -0.02 2.21 16 30 H 0.06 2.16 5.95 -2.38 -0.01 2.14 16 31 H 0.07 2.09 7.89 -2.38 -0.02 2.08 16 32 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 33 H 0.09 2.82 4.52 -2.39 -0.01 2.81 16 34 H 0.02 1.44 8.07 -2.38 -0.02 1.42 16 35 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.16 2.99 5.66 -2.91 -0.02 2.98 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -81.56 322.31 5.92 -75.64 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.06 Total: 9.46 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.33 Total: 3.62 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.15 Total: -88.51 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.95 Total: -43.29 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.59 Total: -5.53 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -81.56 5.92 -75.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277105161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.264 kcal (2) G-P(sol) polarization free energy of solvation -81.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds