Wall clock time and date at job start Tue Mar 31 2020 06:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00197 * 2 1 4 4 C 1.53001 * 109.47455 * 173.24555 * 3 2 1 5 5 C 1.50703 * 109.47035 * 53.24579 * 3 2 1 6 6 O 1.21281 * 120.00411 * 214.99919 * 5 3 2 7 7 N 1.34777 * 119.99574 * 35.00250 * 5 3 2 8 8 C 1.46503 * 119.99828 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47392 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47500 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99495 * 359.97438 * 10 9 8 12 12 C 1.37867 * 120.00233 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00332 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00015 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46931 * 90.00329 * 14 12 10 16 16 H 1.48498 * 109.46919 * 210.00124 * 14 12 10 17 17 H 1.48499 * 109.46884 * 329.99857 * 14 12 10 18 18 C 1.50703 * 109.47208 * 293.24912 * 3 2 1 19 19 C 1.38221 * 120.01193 * 357.47996 * 18 3 2 20 20 C 1.38220 * 120.02231 * 179.97438 * 19 18 3 21 21 C 1.38269 * 120.05504 * 0.02562 * 20 19 18 22 22 C 1.38181 * 120.02466 * 0.02562 * 21 20 19 23 23 C 1.38435 * 120.01208 * 177.20284 * 18 3 2 24 24 F 1.35106 * 120.02926 * 0.02562 * 23 18 3 25 25 H 1.09001 * 109.47068 * 292.12802 * 1 2 3 26 26 H 1.09000 * 109.47204 * 52.12556 * 1 2 3 27 27 H 1.08999 * 109.47640 * 172.12353 * 1 2 3 28 28 H 1.09000 * 109.47277 * 300.00247 * 4 3 2 29 29 H 1.09000 * 109.46836 * 60.00420 * 4 3 2 30 30 H 1.09002 * 109.47293 * 179.97438 * 4 3 2 31 31 H 0.96993 * 120.00319 * 359.97438 * 7 5 3 32 32 H 1.09001 * 109.47447 * 300.00335 * 8 7 5 33 33 H 1.08999 * 109.46984 * 59.99957 * 8 7 5 34 34 H 1.09001 * 109.47313 * 300.00681 * 9 8 7 35 35 H 1.08999 * 109.46876 * 60.00154 * 9 8 7 36 36 H 0.97002 * 120.00739 * 179.97438 * 13 12 10 37 37 H 1.07995 * 119.98523 * 359.97438 * 19 18 3 38 38 H 1.08007 * 119.96875 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.98501 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00876 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5263 1.1887 0.1697 5 6 1.4378 2.1102 1.1384 6 8 1.2533 3.3016 1.0063 7 7 1.1311 1.5058 2.3034 8 6 0.5752 2.2882 3.4103 9 6 0.3180 1.3689 4.6059 10 6 -0.2544 2.1735 5.7443 11 1 -0.4180 3.2346 5.6269 12 6 -0.5683 1.5553 6.9360 13 7 -1.0674 2.2576 7.9296 14 14 -0.2848 -0.2798 7.1393 15 1 1.0842 -0.5139 7.6649 16 1 -1.2816 -0.8322 8.0913 17 1 -0.4316 -0.9521 5.8234 18 6 1.7022 1.9925 -1.3055 19 6 1.0028 1.3222 -2.2913 20 6 0.7197 1.9523 -3.4885 21 6 1.1361 3.2534 -3.7017 22 6 1.8364 3.9252 -2.7179 23 6 2.1147 3.2972 -1.5155 24 9 2.7940 3.9551 -0.5506 25 1 -0.3633 0.3871 0.9520 26 1 -0.3633 0.6309 -0.8112 27 1 -0.3634 -1.0179 -0.1408 28 1 3.7491 0.6918 1.1139 29 1 3.9402 0.6068 -0.6538 30 1 3.9697 2.1845 0.1692 31 1 1.2784 0.5530 2.4089 32 1 1.2822 3.0670 3.6958 33 1 -0.3627 2.7463 3.0963 34 1 -0.3893 0.5903 4.3201 35 1 1.2556 0.9104 4.9200 36 1 -1.2886 1.8227 8.7680 37 1 0.6774 0.3057 -2.1261 38 1 0.1727 1.4278 -4.2582 39 1 0.9147 3.7446 -4.6377 40 1 2.1619 4.9413 -2.8849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277398309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:12 Heat of formation + Delta-G solvation = -91.674925 kcal Electronic energy + Delta-G solvation = -24424.095465 eV Core-core repulsion = 20733.047824 eV Total energy + Delta-G solvation = -3691.047640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.74252 -40.81420 -38.72835 -37.44542 -35.11585 -32.91307 -32.79258 -30.97439 -30.28474 -29.62656 -26.56746 -25.55097 -24.17587 -22.91488 -22.12691 -20.81406 -19.90058 -17.95991 -17.75466 -16.94709 -16.63537 -16.17318 -15.63789 -15.44502 -15.28747 -15.02957 -14.81476 -14.40905 -14.16982 -13.96797 -13.55104 -13.23526 -12.98419 -12.64252 -12.61641 -12.51825 -12.28687 -12.21765 -11.89408 -11.63367 -11.49656 -11.23499 -11.15943 -10.43236 -10.36145 -10.26215 -9.96565 -9.43504 -9.29471 -9.04898 -8.75279 -8.64896 -8.53907 -6.12312 -4.12739 0.94459 1.06177 2.71743 3.18090 3.24732 3.32459 3.33588 3.45429 3.60373 4.20179 4.30223 4.36687 4.60102 4.71447 4.80000 4.89108 5.07103 5.16756 5.20528 5.25379 5.30457 5.45509 5.49717 5.63393 5.64441 5.85753 5.92383 5.99565 6.05449 6.09078 6.16693 6.18684 6.52699 6.67571 6.72740 6.75341 7.11042 7.20428 7.64516 7.81960 8.39702 8.46744 8.91673 9.47669 11.00667 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026548 B = 0.003799 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.452910 B = 7368.700055 C = 7750.897641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.362 6.362 3 C 0.146 3.854 4 C -0.138 4.138 5 C 0.487 3.513 6 O -0.523 6.523 7 N -0.717 5.717 8 C 0.129 3.871 9 C -0.021 4.021 10 C -0.523 4.523 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.898 5.898 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.266 1.266 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.142 4.142 21 C -0.086 4.086 22 C -0.165 4.165 23 C 0.147 3.853 24 F -0.119 7.119 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.400 0.600 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -4.656 -24.163 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.281 6.281 3 C 0.103 3.897 4 C -0.195 4.195 5 C 0.270 3.730 6 O -0.399 6.399 7 N -0.368 5.368 8 C 0.007 3.993 9 C -0.059 4.059 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.536 5.536 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.146 4.146 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.104 4.104 22 C -0.184 4.184 23 C 0.128 3.872 24 F -0.097 7.097 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.151 -3.932 -23.984 25.070 hybrid contribution -0.010 -1.028 0.560 1.171 sum 6.141 -4.961 -23.424 24.719 Atomic orbital electron populations 1.23323 0.80501 1.03564 1.02408 1.87986 1.20444 1.24983 1.94662 1.20506 0.96247 0.82969 0.89984 1.21818 0.89575 1.04095 1.03998 1.20837 0.79249 0.88582 0.84365 1.90745 1.52332 1.14759 1.82114 1.46376 1.63859 1.12972 1.13585 1.21555 0.97866 0.94757 0.85087 1.19790 0.96863 0.95906 0.93336 1.20904 1.42481 0.96879 0.95888 0.90643 1.24994 0.94404 0.98193 0.95641 1.69901 1.43460 1.36175 1.04097 0.86758 0.78261 0.85808 0.78304 1.20171 1.21244 1.19054 1.20018 1.03334 0.94203 0.97087 1.21065 0.96066 1.00496 0.92276 1.21131 1.01950 0.95423 0.97489 1.21032 0.96241 0.94555 0.98588 1.21160 1.02836 1.01379 0.93007 1.17364 0.94051 0.89772 0.86042 1.91560 1.76303 1.80226 1.61574 0.92368 0.92453 0.88625 0.90454 0.90425 0.89804 0.76498 0.91804 0.91930 0.96020 0.96366 0.92527 0.84137 0.85309 0.85127 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.12 101.05 0.92 0.90 16 2 O -0.36 -4.46 9.08 -35.23 -0.32 -4.78 16 3 C 0.15 2.00 0.80 -92.92 -0.07 1.92 16 4 C -0.14 -1.64 8.64 37.16 0.32 -1.32 16 5 C 0.49 8.32 5.49 -10.98 -0.06 8.26 16 6 O -0.52 -10.69 13.25 5.56 0.07 -10.61 16 7 N -0.72 -12.28 4.27 -60.29 -0.26 -12.54 16 8 C 0.13 2.67 5.61 -4.04 -0.02 2.65 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 11 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 14 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 18 C -0.14 -1.91 4.42 -104.55 -0.46 -2.37 16 19 C -0.08 -0.87 7.70 -39.59 -0.30 -1.17 16 20 C -0.14 -1.27 10.04 -39.58 -0.40 -1.67 16 21 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 22 C -0.16 -1.84 10.03 -39.51 -0.40 -2.23 16 23 C 0.15 2.05 6.19 -39.42 -0.24 1.81 16 24 F -0.12 -1.92 12.89 2.25 0.03 -1.89 16 25 H 0.06 0.75 6.23 -51.93 -0.32 0.43 16 26 H 0.06 0.62 5.13 -51.93 -0.27 0.35 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.05 6.53 -51.93 -0.34 0.71 16 31 H 0.40 6.08 7.60 -40.82 -0.31 5.77 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.14 1.31 5.53 -52.49 -0.29 1.02 16 38 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -32.83 326.02 -6.38 -39.21 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.26 Total: 4.01 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.66 Total: -8.12 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.52 Total: -39.14 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.25 Total: -15.40 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.83 -6.38 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277398309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.463 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds