Wall clock time and date at job start Tue Mar 31 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00169 * 2 1 4 4 C 1.53000 * 109.46706 * 54.60894 * 3 2 1 5 5 C 1.50699 * 109.46950 * 174.60202 * 3 2 1 6 6 O 1.21285 * 119.99635 * 145.00234 * 5 3 2 7 7 N 1.34776 * 120.00416 * 324.73001 * 5 3 2 8 8 C 1.46496 * 120.00050 * 179.97438 * 7 5 3 9 9 C 1.53009 * 109.47229 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47138 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00467 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99678 * 179.97438 * 10 9 8 13 13 N 1.31521 * 120.00049 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99855 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47292 * 90.00554 * 14 12 10 16 16 H 1.48511 * 109.47092 * 210.00587 * 14 12 10 17 17 H 1.48503 * 109.47262 * 329.99757 * 14 12 10 18 18 C 1.50698 * 109.47371 * 294.60538 * 3 2 1 19 19 C 1.38216 * 120.01385 * 355.15655 * 18 3 2 20 20 C 1.38225 * 120.02676 * 179.72427 * 19 18 3 21 21 C 1.38273 * 120.04785 * 0.54633 * 20 19 18 22 22 C 1.38175 * 120.02300 * 359.72656 * 21 20 19 23 23 C 1.38435 * 120.01235 * 175.42477 * 18 3 2 24 24 F 1.35109 * 120.02723 * 359.97438 * 23 18 3 25 25 H 1.09002 * 109.47198 * 171.44881 * 1 2 3 26 26 H 1.08999 * 109.46964 * 291.45443 * 1 2 3 27 27 H 1.09007 * 109.46623 * 51.45490 * 1 2 3 28 28 H 1.09009 * 109.47076 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47171 * 299.99618 * 4 3 2 30 30 H 1.08999 * 109.47254 * 59.99831 * 4 3 2 31 31 H 0.97004 * 119.99887 * 359.97438 * 7 5 3 32 32 H 1.09002 * 109.47260 * 299.99840 * 8 7 5 33 33 H 1.09003 * 109.47407 * 60.00063 * 8 7 5 34 34 H 1.09002 * 109.47054 * 300.00193 * 9 8 7 35 35 H 1.09003 * 109.46690 * 59.99850 * 9 8 7 36 36 H 0.96993 * 119.99504 * 179.97438 * 13 12 10 37 37 H 1.08008 * 119.98704 * 359.97438 * 19 18 3 38 38 H 1.07997 * 119.97433 * 180.29158 * 20 19 18 39 39 H 1.07992 * 119.98353 * 179.74993 * 21 20 19 40 40 H 1.07999 * 120.00817 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4545 2.1111 1.1760 5 6 3.5068 1.1889 0.1337 6 8 4.2299 1.9762 -0.4393 7 7 4.0416 0.2133 0.8943 8 6 5.4964 0.0997 1.0237 9 6 5.8367 -1.0807 1.9358 10 6 7.3333 -1.1979 2.0684 11 1 7.9773 -0.5001 1.5541 12 6 7.8803 -2.1955 2.8473 13 7 7.0960 -3.0451 3.4741 14 14 9.7353 -2.3403 3.0123 15 1 10.1944 -1.5286 4.1679 16 1 10.1035 -3.7627 3.2290 17 1 10.3829 -1.8452 1.7710 18 6 1.6742 2.0050 -1.2918 19 6 0.9954 1.3288 -2.2879 20 6 0.6820 1.9720 -3.4706 21 6 1.0570 3.2889 -3.6631 22 6 1.7407 3.9651 -2.6708 23 6 2.0501 3.3235 -1.4833 24 9 2.7180 3.9840 -0.5122 25 1 -0.3634 -1.0163 -0.1528 26 1 -0.3633 0.3759 0.9565 27 1 -0.3633 0.6404 -0.8038 28 1 1.8982 3.1068 1.1763 29 1 0.3721 2.1954 1.0794 30 1 1.6976 1.6051 2.1103 31 1 3.4631 -0.4138 1.3560 32 1 5.9372 -0.0619 0.0400 33 1 5.8957 1.0180 1.4544 34 1 5.3960 -0.9187 2.9194 35 1 5.4374 -1.9992 1.5055 36 1 7.4809 -3.7470 4.0217 37 1 0.7062 0.2987 -2.1406 38 1 0.1475 1.4442 -4.2466 39 1 0.8152 3.7891 -4.5891 40 1 2.0338 4.9936 -2.8215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277398314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:15 Heat of formation + Delta-G solvation = -97.883307 kcal Electronic energy + Delta-G solvation = -24144.016601 eV Core-core repulsion = 20452.699745 eV Total energy + Delta-G solvation = -3691.316856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.82990 -40.61867 -38.65303 -37.65157 -34.87414 -32.80217 -32.60421 -30.91813 -29.98184 -29.16746 -27.49611 -24.97945 -23.93837 -22.88352 -22.11440 -20.83524 -19.84802 -17.83196 -17.78911 -16.79660 -16.36386 -16.08715 -15.70023 -15.47151 -15.11644 -15.02068 -14.65571 -14.54488 -14.30334 -13.94256 -13.43996 -13.13081 -13.02705 -12.63878 -12.57547 -12.38668 -12.27245 -12.07820 -11.75900 -11.65658 -11.17212 -11.01219 -10.95102 -10.61973 -10.29307 -9.97034 -9.82328 -9.49132 -9.24991 -8.99617 -8.73344 -8.50094 -8.31165 -6.06203 -4.08911 0.96997 1.07589 2.77252 3.31627 3.33629 3.37694 3.42231 3.55943 3.73594 4.18914 4.32087 4.44180 4.63559 4.69548 4.85344 4.96799 5.09865 5.12926 5.16896 5.25304 5.30705 5.40949 5.51238 5.56445 5.64529 5.88077 5.94730 5.97884 6.11103 6.20979 6.36740 6.38366 6.73813 6.76558 6.81783 6.95648 7.55798 7.66197 7.91960 8.04358 8.30572 8.63188 8.97038 9.55597 11.05413 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.003479 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.962002 B = 8046.418666 C = 8486.926607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.363 6.363 3 C 0.144 3.856 4 C -0.182 4.182 5 C 0.526 3.474 6 O -0.531 6.531 7 N -0.705 5.705 8 C 0.120 3.880 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.140 4.140 21 C -0.087 4.087 22 C -0.163 4.163 23 C 0.144 3.856 24 F -0.123 7.123 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.077 10.268 -10.560 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.281 6.281 3 C 0.101 3.899 4 C -0.239 4.239 5 C 0.309 3.691 6 O -0.409 6.409 7 N -0.354 5.354 8 C -0.002 4.002 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.141 4.141 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.105 4.105 22 C -0.182 4.182 23 C 0.124 3.876 24 F -0.101 7.101 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.238 0.762 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.374 10.515 -10.793 23.762 hybrid contribution 0.659 -0.194 0.543 0.876 sum -17.715 10.320 -10.250 22.921 Atomic orbital electron populations 1.23127 0.80854 1.03318 1.01193 1.88044 1.20297 1.25000 1.94765 1.20430 0.92475 0.84403 0.92624 1.22506 1.01981 1.02084 0.97328 1.19655 0.87716 0.81947 0.79800 1.90728 1.60605 1.42196 1.47349 1.46239 1.09852 1.30852 1.48433 1.21780 0.76522 1.01023 1.00828 1.19322 0.97265 0.91735 0.94117 1.21053 0.91258 1.14142 1.29511 0.92264 1.24997 0.98340 0.95537 0.95417 1.69961 1.34886 1.17237 1.31191 0.86515 0.85266 0.77204 0.78582 1.20577 1.21175 1.19731 1.20019 1.03021 0.93428 0.97660 1.21063 0.96446 1.00300 0.92053 1.21142 1.01997 0.95146 0.97501 1.21022 0.96621 0.94582 0.98316 1.21134 1.02591 1.01444 0.93022 1.17348 0.93522 0.89905 0.86816 1.91504 1.77571 1.80190 1.60866 0.88936 0.93297 0.92597 0.89589 0.90894 0.90269 0.76195 0.92492 0.92448 0.95917 0.95811 0.92872 0.84138 0.85276 0.85115 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.05 101.05 0.91 1.01 16 2 O -0.36 -4.73 8.97 -35.23 -0.32 -5.04 16 3 C 0.14 2.07 0.79 -92.92 -0.07 2.00 16 4 C -0.18 -2.21 7.80 37.16 0.29 -1.92 16 5 C 0.53 9.79 6.61 -10.99 -0.07 9.72 16 6 O -0.53 -11.50 14.08 5.55 0.08 -11.43 16 7 N -0.70 -13.44 5.47 -60.29 -0.33 -13.77 16 8 C 0.12 2.69 5.61 -4.04 -0.02 2.66 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 14 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.14 -1.91 4.29 -104.56 -0.45 -2.36 16 19 C -0.08 -0.91 7.64 -39.59 -0.30 -1.21 16 20 C -0.14 -1.30 10.05 -39.57 -0.40 -1.70 16 21 C -0.09 -0.81 10.04 -39.59 -0.40 -1.20 16 22 C -0.16 -1.84 10.03 -39.52 -0.40 -2.23 16 23 C 0.14 2.03 6.18 -39.42 -0.24 1.79 16 24 F -0.12 -1.97 13.15 2.25 0.03 -1.94 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.39 6.85 -51.93 -0.36 0.03 16 27 H 0.06 0.45 5.14 -51.93 -0.27 0.18 16 28 H 0.09 1.13 5.96 -51.92 -0.31 0.82 16 29 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.40 7.03 7.92 -40.82 -0.32 6.70 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.14 1.41 5.66 -52.48 -0.30 1.11 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -33.00 330.83 -6.79 -39.79 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.25 Total: 3.21 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.70 Total: -6.73 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.41 Total: -39.49 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.24 Total: -16.47 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.00 -6.79 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277398314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.095 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds