Wall clock time and date at job start Tue Mar 31 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00169 * 2 1 4 4 C 1.53000 * 109.46706 * 54.60894 * 3 2 1 5 5 C 1.50699 * 109.46950 * 174.60202 * 3 2 1 6 6 O 1.21285 * 119.99635 * 145.00234 * 5 3 2 7 7 N 1.34776 * 120.00416 * 324.73001 * 5 3 2 8 8 C 1.46496 * 120.00050 * 179.97438 * 7 5 3 9 9 C 1.53009 * 109.47229 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47138 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00467 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99678 * 179.97438 * 10 9 8 13 13 N 1.31521 * 120.00049 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99855 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47292 * 90.00554 * 14 12 10 16 16 H 1.48511 * 109.47092 * 210.00587 * 14 12 10 17 17 H 1.48503 * 109.47262 * 329.99757 * 14 12 10 18 18 C 1.50698 * 109.47371 * 294.60538 * 3 2 1 19 19 C 1.38216 * 120.01385 * 355.15655 * 18 3 2 20 20 C 1.38225 * 120.02676 * 179.72427 * 19 18 3 21 21 C 1.38273 * 120.04785 * 0.54633 * 20 19 18 22 22 C 1.38175 * 120.02300 * 359.72656 * 21 20 19 23 23 C 1.38435 * 120.01235 * 175.42477 * 18 3 2 24 24 F 1.35109 * 120.02723 * 359.97438 * 23 18 3 25 25 H 1.09002 * 109.47198 * 171.44881 * 1 2 3 26 26 H 1.08999 * 109.46964 * 291.45443 * 1 2 3 27 27 H 1.09007 * 109.46623 * 51.45490 * 1 2 3 28 28 H 1.09009 * 109.47076 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47171 * 299.99618 * 4 3 2 30 30 H 1.08999 * 109.47254 * 59.99831 * 4 3 2 31 31 H 0.97004 * 119.99887 * 359.97438 * 7 5 3 32 32 H 1.09002 * 109.47260 * 299.99840 * 8 7 5 33 33 H 1.09003 * 109.47407 * 60.00063 * 8 7 5 34 34 H 1.09002 * 109.47054 * 300.00193 * 9 8 7 35 35 H 1.09003 * 109.46690 * 59.99850 * 9 8 7 36 36 H 0.96993 * 119.99504 * 179.97438 * 13 12 10 37 37 H 1.08008 * 119.98704 * 359.97438 * 19 18 3 38 38 H 1.07997 * 119.97433 * 180.29158 * 20 19 18 39 39 H 1.07992 * 119.98353 * 179.74993 * 21 20 19 40 40 H 1.07999 * 120.00817 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4545 2.1111 1.1760 5 6 3.5068 1.1889 0.1337 6 8 4.2299 1.9762 -0.4393 7 7 4.0416 0.2133 0.8943 8 6 5.4964 0.0997 1.0237 9 6 5.8367 -1.0807 1.9358 10 6 7.3333 -1.1979 2.0684 11 1 7.9773 -0.5001 1.5541 12 6 7.8803 -2.1955 2.8473 13 7 7.0960 -3.0451 3.4741 14 14 9.7353 -2.3403 3.0123 15 1 10.1944 -1.5286 4.1679 16 1 10.1035 -3.7627 3.2290 17 1 10.3829 -1.8452 1.7710 18 6 1.6742 2.0050 -1.2918 19 6 0.9954 1.3288 -2.2879 20 6 0.6820 1.9720 -3.4706 21 6 1.0570 3.2889 -3.6631 22 6 1.7407 3.9651 -2.6708 23 6 2.0501 3.3235 -1.4833 24 9 2.7180 3.9840 -0.5122 25 1 -0.3634 -1.0163 -0.1528 26 1 -0.3633 0.3759 0.9565 27 1 -0.3633 0.6404 -0.8038 28 1 1.8982 3.1068 1.1763 29 1 0.3721 2.1954 1.0794 30 1 1.6976 1.6051 2.1103 31 1 3.4631 -0.4138 1.3560 32 1 5.9372 -0.0619 0.0400 33 1 5.8957 1.0180 1.4544 34 1 5.3960 -0.9187 2.9194 35 1 5.4374 -1.9992 1.5055 36 1 7.4809 -3.7470 4.0217 37 1 0.7062 0.2987 -2.1406 38 1 0.1475 1.4442 -4.2466 39 1 0.8152 3.7891 -4.5891 40 1 2.0338 4.9936 -2.8215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277398314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:14 Heat of formation + Delta-G solvation = -119.760587 kcal Electronic energy + Delta-G solvation = -24144.965271 eV Core-core repulsion = 20452.699745 eV Total energy + Delta-G solvation = -3692.265526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.88384 -41.74742 -39.86762 -38.63130 -36.67427 -34.83019 -33.60811 -31.87865 -31.51571 -30.34266 -28.38396 -26.83352 -25.00719 -23.73748 -23.49790 -22.56411 -21.13448 -19.10327 -18.75919 -18.44166 -17.75694 -17.15904 -16.77111 -16.59351 -16.53149 -16.42857 -16.11628 -15.79823 -15.42598 -15.25856 -14.73113 -14.41585 -14.29168 -13.91851 -13.83270 -13.54395 -13.30602 -13.22176 -12.98447 -12.94451 -12.56065 -12.54823 -12.46922 -12.26495 -11.82634 -11.70811 -11.48360 -10.93920 -10.83985 -10.61668 -10.08294 -9.91833 -9.61580 -8.24839 -6.35918 0.11337 0.23712 1.39063 1.40980 1.41957 1.53445 2.11454 2.41406 2.58324 2.65201 3.09493 3.26092 3.39131 3.64735 3.76271 3.87992 4.12207 4.35815 4.37137 4.41909 4.44107 4.48593 4.50991 4.54692 4.62683 4.80327 4.81459 4.88038 4.99466 5.10568 5.16355 5.23594 5.32515 5.42809 5.45208 5.54740 5.76113 5.91783 5.93179 6.13912 6.52523 6.76641 7.12980 7.33291 8.87180 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.003479 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.962002 B = 8046.418666 C = 8486.926607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.379 6.379 3 C 0.154 3.846 4 C -0.178 4.178 5 C 0.520 3.480 6 O -0.565 6.565 7 N -0.703 5.703 8 C 0.140 3.860 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.926 5.926 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.267 1.267 18 C -0.161 4.161 19 C -0.088 4.088 20 C -0.131 4.131 21 C -0.079 4.079 22 C -0.170 4.170 23 C 0.107 3.893 24 F -0.145 7.145 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.361 10.275 -12.083 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.299 6.299 3 C 0.111 3.889 4 C -0.235 4.235 5 C 0.305 3.695 6 O -0.445 6.445 7 N -0.353 5.353 8 C 0.017 3.983 9 C -0.013 4.013 10 C -0.587 4.587 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.163 4.163 19 C -0.106 4.106 20 C -0.149 4.149 21 C -0.097 4.097 22 C -0.189 4.189 23 C 0.088 3.912 24 F -0.123 7.123 25 H 0.130 0.870 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.248 0.752 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.695 10.522 -12.316 25.500 hybrid contribution 0.961 -0.207 0.940 1.360 sum -18.734 10.315 -11.375 24.223 Atomic orbital electron populations 1.23405 0.78471 1.04965 1.02310 1.88008 1.22780 1.24086 1.94988 1.20128 0.89165 0.85445 0.94183 1.22497 1.03576 1.00898 0.96535 1.20485 0.89953 0.80626 0.78416 1.90695 1.62238 1.43189 1.48370 1.46099 1.08463 1.31679 1.49099 1.21289 0.78741 0.99118 0.99202 1.19116 0.96184 0.92156 0.93798 1.21447 0.92629 1.14586 1.30000 0.92332 1.25892 1.03467 0.94981 0.94810 1.70067 1.37061 1.17747 1.31651 0.85418 0.79072 0.77538 0.78850 1.19678 1.20344 1.19093 1.20090 1.04621 0.93542 0.98029 1.21311 0.96232 1.00819 0.92222 1.21595 1.00782 0.95227 0.97272 1.21489 0.94803 0.94595 0.98809 1.21445 1.02628 1.02313 0.92492 1.17806 0.95027 0.90688 0.87702 1.91441 1.78377 1.80620 1.61902 0.86994 0.92241 0.91437 0.90965 0.88073 0.90285 0.75236 0.93619 0.93350 0.97313 0.97415 0.92473 0.83059 0.81785 0.81472 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.05 113.37 1.03 1.08 16 2 O -0.38 -9.55 8.97 -148.98 -1.34 -10.89 16 3 C 0.15 4.42 0.79 -12.29 -0.01 4.41 16 4 C -0.18 -4.32 7.80 71.98 0.56 -3.76 16 5 C 0.52 19.93 6.61 87.66 0.58 20.51 16 6 O -0.57 -25.45 14.08 -3.04 -0.04 -25.49 16 7 N -0.70 -27.73 5.47 -463.05 -2.53 -30.27 16 8 C 0.14 6.48 5.61 86.38 0.48 6.97 16 9 C 0.02 1.32 5.09 29.85 0.15 1.47 16 10 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 14 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 C -0.16 -4.32 4.29 -19.82 -0.09 -4.40 16 19 C -0.09 -1.80 7.64 22.26 0.17 -1.63 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 21 C -0.08 -1.20 10.04 22.26 0.22 -0.98 16 22 C -0.17 -3.60 10.03 22.31 0.22 -3.38 16 23 C 0.11 3.03 6.18 22.37 0.14 3.17 16 24 F -0.14 -4.84 13.15 44.97 0.59 -4.25 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 0.80 6.85 -2.39 -0.02 0.79 16 27 H 0.07 0.91 5.14 -2.38 -0.01 0.89 16 28 H 0.07 1.97 5.96 -2.38 -0.01 1.95 16 29 H 0.10 1.83 6.68 -2.39 -0.02 1.81 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.41 14.76 7.92 -92.71 -0.73 14.02 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.15 2.66 5.66 -2.91 -0.02 2.65 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -73.03 330.83 3.71 -69.32 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.33 Total: 18.89 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 4.38 Total: -8.77 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.25 Total: -85.27 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.38 Total: -36.38 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.59 Total: -4.25 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.03 3.71 -69.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277398314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.436 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds