Wall clock time and date at job start Tue Mar 31 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35683 * 117.00086 * 2 1 4 4 N 1.32276 * 119.68226 * 359.97406 * 3 2 1 5 5 C 1.31937 * 121.64318 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.57765 * 180.02562 * 5 4 3 7 7 C 1.38088 * 120.83597 * 359.97438 * 5 4 3 8 8 C 1.38779 * 119.28860 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.75870 * 179.97438 * 8 7 5 10 10 C 1.38425 * 118.48601 * 0.02562 * 8 7 5 11 11 C 1.50702 * 120.44222 * 179.72605 * 10 8 7 12 12 S 1.81395 * 109.47103 * 90.00196 * 11 10 8 13 13 C 1.81401 * 103.00052 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47553 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47229 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47227 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00542 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99799 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47587 * 89.99044 * 20 18 16 22 22 H 1.48504 * 109.47215 * 209.99512 * 20 18 16 23 23 H 1.48503 * 109.46927 * 329.99139 * 20 18 16 24 24 H 1.09006 * 109.47189 * 300.00259 * 1 2 3 25 25 H 1.08999 * 109.46921 * 60.00114 * 1 2 3 26 26 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47024 * 269.97320 * 6 5 4 28 28 H 1.08996 * 109.47208 * 29.97706 * 6 5 4 29 29 H 1.09000 * 109.46874 * 149.97551 * 6 5 4 30 30 H 1.07997 * 120.35537 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46879 * 270.02028 * 9 8 7 32 32 H 1.08995 * 109.47168 * 30.01703 * 9 8 7 33 33 H 1.08996 * 109.47430 * 150.02419 * 9 8 7 34 34 H 1.09005 * 109.46687 * 209.99501 * 11 10 8 35 35 H 1.08999 * 109.47146 * 329.99501 * 11 10 8 36 36 H 1.09005 * 109.46837 * 299.99460 * 13 12 11 37 37 H 1.09004 * 109.47387 * 59.99297 * 13 12 11 38 38 H 1.08995 * 109.46892 * 300.00257 * 14 13 12 39 39 H 1.09004 * 109.47161 * 59.99388 * 14 13 12 40 40 H 1.09003 * 109.47800 * 299.99861 * 15 14 13 41 41 H 1.08998 * 109.47294 * 60.00282 * 15 14 13 42 42 H 0.97000 * 119.99828 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8768 3.5097 -0.0010 6 6 1.0042 4.7384 -0.0010 7 6 3.2507 3.6491 -0.0005 8 6 4.0483 2.5135 0.0000 9 6 5.5510 2.6271 0.0000 10 6 3.4322 1.2739 -0.0005 11 6 4.2558 0.0119 -0.0062 12 16 4.5922 -0.4983 1.7017 13 6 5.5773 -2.0069 1.4905 14 6 5.9485 -2.5701 2.8637 15 6 6.7787 -3.8427 2.6855 16 6 7.1449 -4.3972 4.0382 17 1 6.8178 -3.8925 4.9353 18 6 7.8966 -5.5493 4.1306 19 7 8.2158 -6.0333 5.3110 20 14 8.4618 -6.4226 2.5791 21 1 9.7841 -5.8891 2.1644 22 1 8.5769 -7.8791 2.8449 23 1 7.4736 -6.1940 1.4945 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7938 5.0346 -1.0287 28 1 0.0683 4.5193 0.5128 29 1 1.5195 5.5499 0.5128 30 1 3.6995 4.6314 -0.0006 31 1 5.9133 2.6544 -1.0277 32 1 5.8462 3.5420 0.5136 33 1 5.9805 1.7672 0.5138 34 1 3.7071 -0.7777 -0.5198 35 1 5.1978 0.1951 -0.5230 36 1 4.9960 -2.7461 0.9393 37 1 6.4863 -1.7727 0.9364 38 1 6.5298 -1.8307 3.4146 39 1 5.0397 -2.8041 3.4183 40 1 6.1970 -4.5820 2.1349 41 1 7.6875 -3.6090 2.1310 42 1 8.7450 -6.8437 5.3760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289364416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:46 Heat of formation + Delta-G solvation = -30.186192 kcal Electronic energy + Delta-G solvation = -20654.613155 eV Core-core repulsion = 17532.445042 eV Total energy + Delta-G solvation = -3122.168113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03945 -38.27556 -35.17802 -34.55577 -32.44284 -32.06247 -30.25019 -28.21056 -27.95258 -27.46224 -25.45624 -23.20856 -22.59879 -21.01375 -20.11829 -18.06345 -17.35218 -16.81498 -16.38066 -15.95655 -15.36197 -14.81436 -14.58904 -14.55926 -14.27739 -14.09904 -13.76355 -13.50379 -13.28615 -12.86919 -12.75013 -12.56653 -12.54769 -12.38475 -12.12443 -12.02605 -11.92640 -11.62019 -11.21591 -11.14122 -10.85639 -10.17036 -9.89509 -9.88479 -9.74130 -9.49576 -9.45885 -9.20148 -8.53928 -8.44331 -7.41634 -6.03871 -4.02167 0.70790 1.07178 2.03459 2.86075 2.91308 3.30322 3.37788 3.40971 3.53367 3.91357 4.37024 4.44955 4.57962 4.63203 4.81075 5.04594 5.10295 5.13759 5.15357 5.21665 5.27136 5.29358 5.34522 5.36680 5.43495 5.46449 5.53286 5.54934 5.64170 5.76936 5.84350 6.02826 6.10190 6.27575 6.43862 6.53342 6.84006 7.06588 7.26944 7.39119 7.65908 7.77885 8.54124 9.01326 9.57992 11.09606 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.002806 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.608305 B = 9977.378883 C =10444.529245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.297 6.297 3 C 0.345 3.655 4 N -0.545 5.545 5 C 0.168 3.832 6 C -0.103 4.103 7 C -0.213 4.213 8 C 0.011 3.989 9 C -0.125 4.125 10 C -0.147 4.147 11 C -0.037 4.037 12 S -0.260 6.260 13 C -0.080 4.080 14 C -0.086 4.086 15 C -0.007 4.007 16 C -0.520 4.520 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.012 0.988 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 21.276 -15.778 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.203 6.203 3 C 0.164 3.836 4 N -0.270 5.270 5 C 0.031 3.969 6 C -0.161 4.161 7 C -0.233 4.233 8 C 0.002 3.998 9 C -0.181 4.181 10 C -0.151 4.151 11 C -0.184 4.184 12 S -0.030 6.030 13 C -0.228 4.228 14 C -0.125 4.125 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.185 21.231 -14.744 29.484 hybrid contribution 1.317 -1.042 -1.838 2.490 sum -12.867 20.188 -16.582 29.122 Atomic orbital electron populations 1.22861 0.77279 1.03066 1.02220 1.86306 1.22761 1.24036 1.87186 1.19501 0.88524 0.84714 0.90869 1.67156 1.40559 0.98257 1.21021 1.20896 0.91924 0.91872 0.92168 1.20731 0.99344 0.92863 1.03116 1.21634 0.93728 0.99233 1.08714 1.20012 0.97042 0.91082 0.91661 1.20948 0.89703 1.04427 1.03019 1.19075 0.90757 0.94793 1.10474 1.21989 1.01671 0.97114 0.97668 1.87115 1.71008 1.34610 1.10297 1.23649 1.00160 0.95088 1.03925 1.21261 1.00767 0.98578 0.91925 1.19572 0.94566 0.92432 0.98083 1.21119 1.33181 1.09451 0.92076 0.90918 1.25029 0.95612 0.96962 0.95907 1.69915 1.38779 1.22399 1.23102 0.86771 0.79453 0.78824 0.84192 1.20293 1.21358 1.19037 0.92249 0.92531 0.88517 0.90278 0.90449 0.90402 0.84528 0.90294 0.90511 0.89603 0.88961 0.89306 0.90542 0.90627 0.91852 0.91805 0.96491 0.96946 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.30 -3.91 9.54 -18.75 -0.18 -4.09 16 3 C 0.34 4.60 7.47 -17.12 -0.13 4.48 16 4 N -0.54 -6.76 9.13 -9.55 -0.09 -6.84 16 5 C 0.17 1.72 6.78 -82.60 -0.56 1.16 16 6 C -0.10 -0.68 10.17 36.01 0.37 -0.31 16 7 C -0.21 -2.02 9.44 -39.44 -0.37 -2.39 16 8 C 0.01 0.12 5.91 -104.35 -0.62 -0.50 16 9 C -0.12 -1.06 9.28 36.00 0.33 -0.73 16 10 C -0.15 -1.86 5.17 -104.32 -0.54 -2.40 16 11 C -0.04 -0.46 5.15 36.01 0.19 -0.28 16 12 S -0.26 -4.10 21.45 -107.50 -2.31 -6.41 16 13 C -0.08 -1.34 5.94 37.16 0.22 -1.11 16 14 C -0.09 -1.76 5.16 -26.74 -0.14 -1.90 16 15 C -0.01 -0.17 4.04 -27.89 -0.11 -0.29 16 16 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 20 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.09 0.85 6.58 -51.93 -0.34 0.51 16 34 H 0.09 1.18 7.55 -51.92 -0.39 0.79 16 35 H 0.09 0.97 6.82 -51.92 -0.35 0.62 16 36 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 41 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -32.99 359.90 -8.71 -41.70 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.93 Total: -3.17 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.74 Total: -16.37 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.69 Total: -34.22 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.18 Total: -4.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.31 Total: -6.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.99 -8.71 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289364416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.512 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds