Wall clock time and date at job start Tue Mar 31 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35683 * 117.00086 * 2 1 4 4 N 1.32276 * 119.68226 * 359.97406 * 3 2 1 5 5 C 1.31937 * 121.64318 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.57765 * 180.02562 * 5 4 3 7 7 C 1.38088 * 120.83597 * 359.97438 * 5 4 3 8 8 C 1.38779 * 119.28860 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.75870 * 179.97438 * 8 7 5 10 10 C 1.38425 * 118.48601 * 0.02562 * 8 7 5 11 11 C 1.50702 * 120.44222 * 179.72605 * 10 8 7 12 12 S 1.81395 * 109.47103 * 90.00196 * 11 10 8 13 13 C 1.81401 * 103.00052 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47553 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47229 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47227 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00542 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99799 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47587 * 89.99044 * 20 18 16 22 22 H 1.48504 * 109.47215 * 209.99512 * 20 18 16 23 23 H 1.48503 * 109.46927 * 329.99139 * 20 18 16 24 24 H 1.09006 * 109.47189 * 300.00259 * 1 2 3 25 25 H 1.08999 * 109.46921 * 60.00114 * 1 2 3 26 26 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47024 * 269.97320 * 6 5 4 28 28 H 1.08996 * 109.47208 * 29.97706 * 6 5 4 29 29 H 1.09000 * 109.46874 * 149.97551 * 6 5 4 30 30 H 1.07997 * 120.35537 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46879 * 270.02028 * 9 8 7 32 32 H 1.08995 * 109.47168 * 30.01703 * 9 8 7 33 33 H 1.08996 * 109.47430 * 150.02419 * 9 8 7 34 34 H 1.09005 * 109.46687 * 209.99501 * 11 10 8 35 35 H 1.08999 * 109.47146 * 329.99501 * 11 10 8 36 36 H 1.09005 * 109.46837 * 299.99460 * 13 12 11 37 37 H 1.09004 * 109.47387 * 59.99297 * 13 12 11 38 38 H 1.08995 * 109.46892 * 300.00257 * 14 13 12 39 39 H 1.09004 * 109.47161 * 59.99388 * 14 13 12 40 40 H 1.09003 * 109.47800 * 299.99861 * 15 14 13 41 41 H 1.08998 * 109.47294 * 60.00282 * 15 14 13 42 42 H 0.97000 * 119.99828 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8768 3.5097 -0.0010 6 6 1.0042 4.7384 -0.0010 7 6 3.2507 3.6491 -0.0005 8 6 4.0483 2.5135 0.0000 9 6 5.5510 2.6271 0.0000 10 6 3.4322 1.2739 -0.0005 11 6 4.2558 0.0119 -0.0062 12 16 4.5922 -0.4983 1.7017 13 6 5.5773 -2.0069 1.4905 14 6 5.9485 -2.5701 2.8637 15 6 6.7787 -3.8427 2.6855 16 6 7.1449 -4.3972 4.0382 17 1 6.8178 -3.8925 4.9353 18 6 7.8966 -5.5493 4.1306 19 7 8.2158 -6.0333 5.3110 20 14 8.4618 -6.4226 2.5791 21 1 9.7841 -5.8891 2.1644 22 1 8.5769 -7.8791 2.8449 23 1 7.4736 -6.1940 1.4945 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7938 5.0346 -1.0287 28 1 0.0683 4.5193 0.5128 29 1 1.5195 5.5499 0.5128 30 1 3.6995 4.6314 -0.0006 31 1 5.9133 2.6544 -1.0277 32 1 5.8462 3.5420 0.5136 33 1 5.9805 1.7672 0.5138 34 1 3.7071 -0.7777 -0.5198 35 1 5.1978 0.1951 -0.5230 36 1 4.9960 -2.7461 0.9393 37 1 6.4863 -1.7727 0.9364 38 1 6.5298 -1.8307 3.4146 39 1 5.0397 -2.8041 3.4183 40 1 6.1970 -4.5820 2.1349 41 1 7.6875 -3.6090 2.1310 42 1 8.7450 -6.8437 5.3760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289364416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:45 Heat of formation + Delta-G solvation = -50.326998 kcal Electronic energy + Delta-G solvation = -20655.486526 eV Core-core repulsion = 17532.445042 eV Total energy + Delta-G solvation = -3123.041484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85519 -39.11350 -36.40265 -35.96166 -34.15976 -33.21609 -31.00149 -29.91189 -28.87523 -28.18827 -26.31192 -24.97365 -23.49236 -22.07188 -21.64312 -18.96726 -18.89666 -18.17147 -17.37685 -17.04328 -16.38342 -16.27614 -16.22044 -15.42048 -15.33356 -14.97964 -14.86926 -14.57716 -14.34172 -14.09305 -13.89503 -13.67540 -13.53638 -13.26184 -13.18304 -13.12566 -12.94934 -12.72575 -12.66230 -12.44124 -11.90725 -11.84042 -11.64645 -11.58072 -11.37036 -10.97202 -10.77096 -10.64028 -10.32414 -9.29702 -8.64360 -8.29765 -6.35025 -0.17266 0.26575 0.92644 1.36506 1.39147 1.51089 1.69331 2.10692 2.36507 2.71595 3.05316 3.16584 3.66478 3.73148 3.80975 4.03067 4.04407 4.05306 4.35469 4.39285 4.40273 4.41811 4.55565 4.56506 4.65231 4.69284 4.75920 4.76756 4.78575 4.81759 4.84450 4.99699 5.01401 5.05561 5.25460 5.34205 5.43496 5.52119 5.57548 5.63767 6.22658 6.26832 6.72653 6.84459 7.29400 8.87354 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.002806 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.608305 B = 9977.378883 C =10444.529245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.317 6.317 3 C 0.324 3.676 4 N -0.562 5.562 5 C 0.158 3.842 6 C -0.100 4.100 7 C -0.211 4.211 8 C 0.008 3.992 9 C -0.123 4.123 10 C -0.172 4.172 11 C -0.017 4.017 12 S -0.294 6.294 13 C -0.069 4.069 14 C -0.078 4.078 15 C -0.004 4.004 16 C -0.537 4.537 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.956 3.044 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.243 1.243 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.169 0.831 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.024 0.976 41 H 0.027 0.973 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 22.828 -18.702 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.224 6.224 3 C 0.144 3.856 4 N -0.288 5.288 5 C 0.021 3.979 6 C -0.157 4.157 7 C -0.231 4.231 8 C -0.001 4.001 9 C -0.179 4.179 10 C -0.176 4.176 11 C -0.165 4.165 12 S -0.064 6.064 13 C -0.217 4.217 14 C -0.116 4.116 15 C -0.043 4.043 16 C -0.575 4.575 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.593 5.593 20 Si 0.779 3.221 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.167 1.167 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.186 0.814 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.935 22.798 -17.668 32.033 hybrid contribution 1.141 -1.369 -0.848 1.974 sum -12.795 21.429 -18.516 31.076 Atomic orbital electron populations 1.23001 0.76048 1.04318 1.02145 1.86265 1.24173 1.24571 1.87389 1.19769 0.89089 0.85047 0.91704 1.67208 1.41014 0.98822 1.21773 1.21602 0.93118 0.92213 0.90927 1.20835 0.98743 0.91845 1.04304 1.22014 0.93418 1.00302 1.07386 1.20376 0.98352 0.90780 0.90621 1.20997 0.88055 1.04587 1.04237 1.19213 0.90656 0.95422 1.12338 1.21943 1.02587 0.97170 0.94781 1.87232 1.70949 1.34136 1.14101 1.23395 1.01323 0.95712 1.01301 1.21025 0.99300 0.97103 0.94222 1.19497 0.95703 0.93886 0.95193 1.21481 1.33205 1.09684 0.93108 0.95452 1.26093 0.95626 0.97864 0.99948 1.70082 1.39965 1.23248 1.26049 0.85575 0.79776 0.77202 0.79590 1.18836 1.21034 1.16653 0.92851 0.92018 0.86628 0.88781 0.90939 0.88127 0.81361 0.88389 0.88851 0.91042 0.89333 0.87368 0.89729 0.88814 0.92912 0.93462 0.95748 0.95503 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.94 16 2 O -0.32 -8.39 9.54 -90.01 -0.86 -9.25 16 3 C 0.32 8.56 7.47 84.78 0.63 9.20 16 4 N -0.56 -13.57 9.13 -296.97 -2.71 -16.28 16 5 C 0.16 2.94 6.78 42.51 0.29 3.23 16 6 C -0.10 -1.07 10.17 71.24 0.72 -0.34 16 7 C -0.21 -3.46 9.44 22.36 0.21 -3.25 16 8 C 0.01 0.15 5.91 -19.69 -0.12 0.04 16 9 C -0.12 -1.76 9.28 71.24 0.66 -1.10 16 10 C -0.17 -4.19 5.17 -19.67 -0.10 -4.29 16 11 C -0.02 -0.42 5.15 71.24 0.37 -0.05 16 12 S -0.29 -9.11 21.45 -56.49 -1.21 -10.32 16 13 C -0.07 -2.22 5.94 71.98 0.43 -1.79 16 14 C -0.08 -3.18 5.16 30.59 0.16 -3.03 16 15 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 16 C -0.54 -31.84 9.66 25.60 0.25 -31.60 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.07 5.47 84.65 0.46 0.53 16 19 N -0.95 -60.95 13.96 21.45 0.30 -60.66 16 20 Si 0.96 44.34 27.47 68.60 1.88 46.22 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 24 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 25 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.07 1.27 6.58 -2.39 -0.02 1.25 16 34 H 0.09 2.19 7.55 -2.39 -0.02 2.17 16 35 H 0.11 2.15 6.82 -2.39 -0.02 2.13 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 41 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 42 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -73.65 359.90 3.59 -70.06 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.93 Total: 10.79 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.26 Total: -30.56 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.41 Total: -76.94 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.86 Total: -9.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.21 Total: -10.32 kcal Total: -73.65 3.59 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289364416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.734 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds