Wall clock time and date at job start Tue Mar 31 2020 08:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47541 * 2 1 4 4 N 1.46504 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.46496 * 119.99880 * 90.00184 * 4 3 2 6 6 C 1.53000 * 109.47378 * 89.99779 * 5 4 3 7 7 C 1.50706 * 109.47116 * 179.97438 * 6 5 4 8 8 C 1.33391 * 125.19937 * 90.00083 * 7 6 5 9 9 C 1.38423 * 114.92045 * 179.97438 * 8 7 6 10 10 C 1.33390 * 114.91979 * 359.97438 * 9 8 7 11 11 S 1.75878 * 125.20693 * 269.69344 * 7 6 5 12 12 C 1.34777 * 119.99854 * 269.99444 * 4 3 2 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 4 3 14 14 C 1.50696 * 119.99761 * 0.02562 * 12 4 3 15 15 C 1.53002 * 109.46919 * 179.97438 * 14 12 4 16 16 C 1.50706 * 109.47305 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00126 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47555 * 89.99653 * 20 18 16 22 22 H 1.48503 * 109.47081 * 210.00113 * 20 18 16 23 23 H 1.48504 * 109.46948 * 329.99814 * 20 18 16 24 24 H 1.09006 * 109.46918 * 299.99885 * 1 2 3 25 25 H 1.08998 * 109.47080 * 59.99622 * 1 2 3 26 26 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46918 * 240.00115 * 2 1 3 28 28 H 1.09005 * 109.47439 * 120.00237 * 2 1 3 29 29 H 1.08997 * 109.47177 * 60.00095 * 3 2 1 30 30 H 1.09005 * 109.46503 * 299.99907 * 3 2 1 31 31 H 1.09000 * 109.47518 * 329.99267 * 5 4 3 32 32 H 1.09008 * 109.47096 * 209.99944 * 5 4 3 33 33 H 1.09000 * 109.46884 * 60.00202 * 6 5 4 34 34 H 1.09000 * 109.46955 * 299.99518 * 6 5 4 35 35 H 1.07995 * 122.54106 * 359.95411 * 8 7 6 36 36 H 1.08001 * 122.53959 * 180.02562 * 9 8 7 37 37 H 1.07998 * 125.20163 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.47662 * 299.99732 * 14 12 4 39 39 H 1.09004 * 109.47237 * 59.99891 * 14 12 4 40 40 H 1.09000 * 109.47312 * 300.00045 * 15 14 12 41 41 H 1.09004 * 109.46930 * 60.00101 * 15 14 12 42 42 H 0.97005 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.2370 1.4425 -1.2696 6 6 4.4919 2.8851 -1.7112 7 6 5.2454 2.8852 -3.0164 8 6 4.6859 2.8852 -4.2273 9 6 5.5808 2.8859 -5.2833 10 6 6.8670 2.8869 -4.9301 11 16 6.9969 2.8930 -3.1761 12 6 4.1794 1.4422 1.1663 13 8 5.3922 1.4426 1.1659 14 6 3.4264 1.4416 2.4716 15 6 4.4211 1.4410 3.6342 16 6 3.6681 1.4410 4.9397 17 1 2.5882 1.4411 4.9401 18 6 4.3580 1.4410 6.1334 19 7 5.6731 1.4405 6.1328 20 14 3.4247 1.4403 7.7515 21 1 3.1777 0.0402 8.1800 22 1 4.2274 2.1405 8.7862 23 1 2.1268 2.1400 7.5746 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9562 -0.8901 31 1 3.6477 0.9288 -2.0291 32 1 5.1895 0.9286 -1.1398 33 1 5.0814 3.3987 -0.9518 34 1 3.5394 3.3989 -1.8412 35 1 3.6157 2.8844 -4.3727 36 1 5.2617 2.8864 -6.3152 37 1 7.7011 2.8879 -5.6161 38 1 2.7995 2.3314 2.5300 39 1 2.8000 0.5514 2.5294 40 1 5.0477 0.5510 3.5758 41 1 5.0478 2.3310 3.5766 42 1 6.1585 1.4401 6.9727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291817106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:52 Heat of formation + Delta-G solvation = -27.821863 kcal Electronic energy + Delta-G solvation = -21097.801122 eV Core-core repulsion = 17975.735534 eV Total energy + Delta-G solvation = -3122.065588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.65472 -38.03620 -36.13300 -34.07144 -33.30360 -31.91708 -30.86458 -28.14448 -26.15307 -25.75428 -24.15315 -22.55844 -21.89145 -20.92650 -19.35294 -18.44039 -17.29180 -17.02285 -16.03868 -15.69244 -15.57609 -15.02429 -14.63643 -14.41142 -13.99675 -13.62488 -13.44567 -13.28375 -12.92196 -12.53543 -12.47232 -12.29723 -12.14672 -12.08304 -11.92480 -11.70832 -11.37535 -11.09917 -10.99431 -10.93989 -10.75106 -10.68993 -10.57096 -9.90875 -9.61321 -9.15998 -9.01875 -8.88494 -8.59069 -8.36846 -8.29422 -5.94831 -3.99195 0.86751 1.53278 1.92850 2.58753 3.22346 3.26617 3.33828 3.40095 3.42588 4.47688 4.71135 4.81078 4.89841 4.91295 4.96978 5.17087 5.22711 5.32038 5.36375 5.37838 5.40084 5.45084 5.53838 5.62760 5.73431 5.79291 5.94187 6.02716 6.04974 6.05914 6.14568 6.21319 6.24357 6.29557 6.37254 6.78620 6.91559 7.73875 7.75949 7.87846 8.08604 8.39868 8.75451 9.09295 9.64270 11.16113 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003316 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.964289 B = 8442.755325 C = 9827.161624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.626 5.626 5 C 0.123 3.877 6 C -0.067 4.067 7 C -0.163 4.163 8 C -0.147 4.147 9 C -0.135 4.135 10 C -0.225 4.225 11 S 0.113 5.887 12 C 0.511 3.489 13 O -0.530 6.530 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 1.493 -22.845 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.012 4.012 4 N -0.361 5.361 5 C -0.001 4.001 6 C -0.107 4.107 7 C -0.281 4.281 8 C -0.177 4.177 9 C -0.165 4.165 10 C -0.361 4.361 11 S 0.377 5.623 12 C 0.301 3.699 13 O -0.405 6.405 14 C -0.168 4.168 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.472 1.508 -21.694 22.201 hybrid contribution -1.647 -0.017 -0.260 1.667 sum -6.119 1.491 -21.954 22.840 Atomic orbital electron populations 1.21696 0.95241 1.01874 1.01880 1.21983 0.96026 0.97481 1.02896 1.21613 0.79575 0.96854 1.03154 1.48206 1.06458 1.75663 1.05744 1.21309 0.98299 0.95043 0.85405 1.20571 0.99479 0.98955 0.91719 1.24477 0.96414 1.08379 0.98825 1.20098 1.01046 1.05550 0.91032 1.20130 0.92179 1.03916 1.00315 1.25661 1.00872 1.11116 0.98429 1.84680 1.04200 1.72001 1.01469 1.21618 0.88430 0.74227 0.85607 1.90666 1.14395 1.48183 1.87271 1.21905 1.00673 1.02265 0.91947 1.18906 0.93176 0.98552 0.89419 1.21212 0.92886 1.51331 0.91009 0.92650 1.25021 0.94813 0.95341 0.99194 1.69999 1.06034 1.50216 1.26563 0.86606 0.79782 0.78059 0.83588 1.20683 1.21232 1.19890 0.92238 0.92887 0.92599 0.92020 0.91073 0.89713 0.90943 0.90853 0.89870 0.90014 0.89976 0.84466 0.84586 0.82143 0.90345 0.90267 0.95888 0.95893 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.15 -1.51 6.26 -26.73 -0.17 -1.68 16 3 C 0.11 1.22 5.21 -4.04 -0.02 1.20 16 4 N -0.63 -9.03 2.47 -173.69 -0.43 -9.46 16 5 C 0.12 1.59 5.39 -4.04 -0.02 1.57 16 6 C -0.07 -0.80 6.03 -27.88 -0.17 -0.97 16 7 C -0.16 -1.85 5.76 -36.00 -0.21 -2.06 16 8 C -0.15 -1.44 10.05 -41.21 -0.41 -1.85 16 9 C -0.13 -1.23 10.18 -41.21 -0.42 -1.65 16 10 C -0.23 -2.14 11.23 29.04 0.33 -1.81 16 11 S 0.11 1.31 23.33 -107.50 -2.51 -1.20 16 12 C 0.51 9.95 7.67 -10.99 -0.08 9.86 16 13 O -0.53 -12.54 15.56 5.56 0.09 -12.46 16 14 C -0.13 -2.62 4.19 -27.88 -0.12 -2.74 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.88 7.22 -51.93 -0.37 0.50 16 29 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.08 1.27 7.42 -51.92 -0.39 0.89 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.08 1.47 7.40 -51.93 -0.38 1.08 16 39 H 0.08 1.49 7.18 -51.93 -0.37 1.12 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -33.53 363.31 -9.99 -43.52 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.88 Total: -1.95 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.46 Total: -13.80 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.31 Total: -36.27 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.53 -9.99 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291817106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.700 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds