Wall clock time and date at job start Tue Mar 31 2020 08:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47541 * 2 1 4 4 N 1.46504 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.46496 * 119.99880 * 90.00184 * 4 3 2 6 6 C 1.53000 * 109.47378 * 89.99779 * 5 4 3 7 7 C 1.50706 * 109.47116 * 179.97438 * 6 5 4 8 8 C 1.33391 * 125.19937 * 90.00083 * 7 6 5 9 9 C 1.38423 * 114.92045 * 179.97438 * 8 7 6 10 10 C 1.33390 * 114.91979 * 359.97438 * 9 8 7 11 11 S 1.75878 * 125.20693 * 269.69344 * 7 6 5 12 12 C 1.34777 * 119.99854 * 269.99444 * 4 3 2 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 4 3 14 14 C 1.50696 * 119.99761 * 0.02562 * 12 4 3 15 15 C 1.53002 * 109.46919 * 179.97438 * 14 12 4 16 16 C 1.50706 * 109.47305 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99987 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00126 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47555 * 89.99653 * 20 18 16 22 22 H 1.48503 * 109.47081 * 210.00113 * 20 18 16 23 23 H 1.48504 * 109.46948 * 329.99814 * 20 18 16 24 24 H 1.09006 * 109.46918 * 299.99885 * 1 2 3 25 25 H 1.08998 * 109.47080 * 59.99622 * 1 2 3 26 26 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46918 * 240.00115 * 2 1 3 28 28 H 1.09005 * 109.47439 * 120.00237 * 2 1 3 29 29 H 1.08997 * 109.47177 * 60.00095 * 3 2 1 30 30 H 1.09005 * 109.46503 * 299.99907 * 3 2 1 31 31 H 1.09000 * 109.47518 * 329.99267 * 5 4 3 32 32 H 1.09008 * 109.47096 * 209.99944 * 5 4 3 33 33 H 1.09000 * 109.46884 * 60.00202 * 6 5 4 34 34 H 1.09000 * 109.46955 * 299.99518 * 6 5 4 35 35 H 1.07995 * 122.54106 * 359.95411 * 8 7 6 36 36 H 1.08001 * 122.53959 * 180.02562 * 9 8 7 37 37 H 1.07998 * 125.20163 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.47662 * 299.99732 * 14 12 4 39 39 H 1.09004 * 109.47237 * 59.99891 * 14 12 4 40 40 H 1.09000 * 109.47312 * 300.00045 * 15 14 12 41 41 H 1.09004 * 109.46930 * 60.00101 * 15 14 12 42 42 H 0.97005 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.2370 1.4425 -1.2696 6 6 4.4919 2.8851 -1.7112 7 6 5.2454 2.8852 -3.0164 8 6 4.6859 2.8852 -4.2273 9 6 5.5808 2.8859 -5.2833 10 6 6.8670 2.8869 -4.9301 11 16 6.9969 2.8930 -3.1761 12 6 4.1794 1.4422 1.1663 13 8 5.3922 1.4426 1.1659 14 6 3.4264 1.4416 2.4716 15 6 4.4211 1.4410 3.6342 16 6 3.6681 1.4410 4.9397 17 1 2.5882 1.4411 4.9401 18 6 4.3580 1.4410 6.1334 19 7 5.6731 1.4405 6.1328 20 14 3.4247 1.4403 7.7515 21 1 3.1777 0.0402 8.1800 22 1 4.2274 2.1405 8.7862 23 1 2.1268 2.1400 7.5746 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9562 -0.8901 31 1 3.6477 0.9288 -2.0291 32 1 5.1895 0.9286 -1.1398 33 1 5.0814 3.3987 -0.9518 34 1 3.5394 3.3989 -1.8412 35 1 3.6157 2.8844 -4.3727 36 1 5.2617 2.8864 -6.3152 37 1 7.7011 2.8879 -5.6161 38 1 2.7995 2.3314 2.5300 39 1 2.8000 0.5514 2.5294 40 1 5.0477 0.5510 3.5758 41 1 5.0478 2.3310 3.5766 42 1 6.1585 1.4401 6.9727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291817106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:52 Heat of formation + Delta-G solvation = -46.765542 kcal Electronic energy + Delta-G solvation = -21098.622581 eV Core-core repulsion = 17975.735534 eV Total energy + Delta-G solvation = -3122.887047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06427 -38.86174 -37.40169 -35.67990 -34.74479 -33.14497 -32.59091 -29.20062 -27.71213 -26.88407 -25.38362 -23.74989 -22.96235 -22.37376 -20.10468 -19.84947 -18.80572 -18.18201 -17.66651 -17.05276 -16.58933 -16.42343 -16.27263 -15.53459 -15.09416 -14.85592 -14.75872 -14.25767 -14.17452 -13.90559 -13.67119 -13.32059 -13.26252 -13.13938 -13.08927 -12.91081 -12.80194 -12.52718 -12.46031 -12.14724 -11.99844 -11.96413 -11.61380 -11.53727 -11.46580 -11.30521 -10.68034 -10.57185 -9.89202 -9.46783 -9.40562 -8.18242 -6.32659 0.08261 0.71567 1.15604 1.41474 1.44548 1.55433 1.67207 1.85538 2.06368 2.42887 3.14618 3.69289 3.85071 4.02514 4.08432 4.10268 4.25087 4.27194 4.42862 4.45888 4.49191 4.54836 4.57236 4.64407 4.73579 4.79760 4.87744 4.95516 5.03658 5.08868 5.23614 5.25960 5.31645 5.38163 5.47729 5.51445 5.61176 5.64062 5.68177 5.84541 6.16837 6.39327 6.85655 7.26720 7.37786 8.94558 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003316 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.964289 B = 8442.755325 C = 9827.161624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.103 3.897 4 N -0.610 5.610 5 C 0.125 3.875 6 C -0.056 4.056 7 C -0.181 4.181 8 C -0.131 4.131 9 C -0.137 4.137 10 C -0.214 4.214 11 S 0.038 5.962 12 C 0.508 3.492 13 O -0.587 6.587 14 C -0.115 4.115 15 C 0.044 3.956 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.254 1.254 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.102 0.898 39 H 0.099 0.901 40 H -0.021 1.021 41 H -0.020 1.020 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 1.702 -24.855 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.018 4.018 4 N -0.342 5.342 5 C 0.001 3.999 6 C -0.096 4.096 7 C -0.299 4.299 8 C -0.162 4.162 9 C -0.167 4.167 10 C -0.350 4.350 11 S 0.301 5.699 12 C 0.298 3.702 13 O -0.467 6.467 14 C -0.154 4.154 15 C 0.006 3.994 16 C -0.579 4.579 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.177 1.177 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.200 0.800 38 H 0.120 0.880 39 H 0.117 0.883 40 H -0.003 1.003 41 H -0.002 1.002 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.398 1.715 -23.755 25.254 hybrid contribution -0.447 -0.092 0.219 0.506 sum -8.845 1.623 -23.536 25.195 Atomic orbital electron populations 1.21664 0.93359 1.02391 1.02798 1.21937 0.97555 0.96561 1.02010 1.21983 0.76779 0.97914 1.05137 1.48137 1.08123 1.73263 1.04715 1.21432 0.97329 0.96008 0.85083 1.20400 1.00132 0.97826 0.91239 1.24379 0.95335 1.10951 0.99193 1.20468 1.02571 1.02944 0.90178 1.20524 0.91669 1.02812 1.01678 1.25931 1.02161 1.10412 0.96446 1.84987 1.06404 1.73589 1.04875 1.21408 0.87622 0.74226 0.86909 1.90649 1.16712 1.51228 1.88137 1.21646 0.99205 1.04284 0.90290 1.18679 0.93645 0.94448 0.92594 1.21694 0.93964 1.50771 0.91510 0.90563 1.26155 0.95716 0.94615 1.04003 1.70188 1.08359 1.51480 1.27811 0.85316 0.78723 0.78552 0.77636 1.19682 1.21201 1.17726 0.92403 0.90880 0.92359 0.91374 0.93629 0.89641 0.87105 0.87199 0.93166 0.93623 0.87364 0.81628 0.81449 0.79997 0.87987 0.88278 1.00262 1.00152 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.14 -2.58 6.26 30.59 0.19 -2.39 16 3 C 0.10 1.96 5.21 86.38 0.45 2.41 16 4 N -0.61 -17.17 2.47 -821.81 -2.03 -19.20 16 5 C 0.12 3.13 5.39 86.38 0.47 3.59 16 6 C -0.06 -1.30 6.03 29.85 0.18 -1.12 16 7 C -0.18 -3.96 5.76 24.59 0.14 -3.82 16 8 C -0.13 -2.15 10.05 21.22 0.21 -1.94 16 9 C -0.14 -2.05 10.18 21.22 0.22 -1.83 16 10 C -0.21 -3.72 11.23 66.72 0.75 -2.97 16 11 S 0.04 0.93 23.33 -56.49 -1.32 -0.39 16 12 C 0.51 20.57 7.67 87.66 0.67 21.24 16 13 O -0.59 -30.08 15.56 -3.03 -0.05 -30.13 16 14 C -0.11 -4.78 4.19 29.85 0.13 -4.66 16 15 C 0.04 2.52 4.26 29.85 0.13 2.64 16 16 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 17 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 18 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 19 N -0.94 -60.50 13.29 21.44 0.28 -60.22 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.04 1.06 7.22 -2.38 -0.02 1.05 16 29 H 0.09 1.66 6.44 -2.39 -0.02 1.65 16 30 H 0.11 1.35 8.07 -2.38 -0.02 1.33 16 31 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 32 H 0.05 1.62 7.42 -2.38 -0.02 1.60 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.10 3.74 7.40 -2.39 -0.02 3.72 16 39 H 0.10 3.71 7.18 -2.38 -0.02 3.70 16 40 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 41 H -0.02 -1.29 8.10 -2.38 -0.02 -1.31 16 42 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -79.36 363.31 4.83 -74.52 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.98 Total: 9.80 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.94 Total: -21.10 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.75 Total: -79.42 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -1.32 Total: -0.39 kcal Total: -79.36 4.83 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291817106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.758 kcal (2) G-P(sol) polarization free energy of solvation -79.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds