Wall clock time and date at job start Tue Mar 31 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33826 * 122.44559 * 2 1 4 4 S 1.70608 * 110.95104 * 179.78509 * 3 2 1 5 5 C 1.75830 * 91.56572 * 0.30618 * 4 3 2 6 6 C 1.46584 * 125.45675 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99934 * 186.66810 * 6 5 4 8 8 N 1.34780 * 120.00124 * 6.67793 * 6 5 4 9 9 C 1.46501 * 119.99928 * 184.09417 * 8 6 5 10 10 C 1.50696 * 109.46875 * 269.99398 * 9 8 6 11 11 H 1.07996 * 120.00298 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99730 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99940 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47357 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47196 * 119.99776 * 14 12 10 17 17 H 1.48504 * 109.47110 * 239.99964 * 14 12 10 18 18 C 1.46496 * 120.00060 * 4.08641 * 8 6 5 19 19 C 1.53002 * 109.47577 * 263.22076 * 18 8 6 20 20 C 1.52995 * 109.47037 * 53.80672 * 19 18 8 21 21 C 1.52991 * 109.47143 * 173.80829 * 19 18 8 22 22 C 1.52998 * 109.46692 * 293.80930 * 19 18 8 23 23 C 1.36643 * 109.08298 * 359.69710 * 5 4 3 24 24 H 1.09007 * 109.46742 * 269.97687 * 1 2 3 25 25 H 1.09001 * 109.47392 * 29.97356 * 1 2 3 26 26 H 1.09001 * 109.46782 * 149.98093 * 1 2 3 27 27 H 1.08001 * 124.51938 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46866 * 29.99843 * 9 8 6 29 29 H 1.08999 * 109.46956 * 149.99830 * 9 8 6 30 30 H 0.97004 * 120.00289 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47179 * 23.22324 * 18 8 6 32 32 H 1.09001 * 109.46997 * 143.21537 * 18 8 6 33 33 H 1.09010 * 109.47148 * 78.52645 * 20 19 18 34 34 H 1.08995 * 109.47760 * 198.52787 * 20 19 18 35 35 H 1.09007 * 109.47379 * 318.53092 * 20 19 18 36 36 H 1.09002 * 109.47720 * 60.00045 * 21 19 18 37 37 H 1.09007 * 109.47381 * 180.02562 * 21 19 18 38 38 H 1.09001 * 109.47226 * 299.99975 * 21 19 18 39 39 H 1.09002 * 109.47051 * 60.00142 * 22 19 18 40 40 H 1.09007 * 109.46485 * 179.97438 * 22 19 18 41 41 H 1.08994 * 109.47130 * 299.99550 * 22 19 18 42 42 H 1.07998 * 123.34946 * 180.25122 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1294 0.0000 4 16 3.8968 0.7894 0.0060 5 6 3.5937 -0.9426 -0.0009 6 6 4.6232 -1.9860 -0.0004 7 8 4.3059 -3.1540 -0.1279 8 7 5.9212 -1.6520 0.1413 9 6 6.9572 -2.6841 0.0521 10 6 7.2156 -3.2561 1.4221 11 1 6.6632 -2.8880 2.2740 12 6 8.1574 -4.2494 1.5879 13 7 8.8297 -4.6979 0.5504 14 14 8.4773 -4.9590 3.2860 15 1 7.5968 -4.2890 4.2764 16 1 8.1920 -6.4163 3.2753 17 1 9.8980 -4.7353 3.6563 18 6 6.2963 -0.2569 0.3845 19 6 6.6887 0.4039 -0.9385 20 6 5.5601 0.2197 -1.9550 21 6 6.9310 1.8972 -0.7106 22 6 7.9672 -0.2446 -1.4729 23 6 2.2447 -1.1600 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.8024 2.1233 0.0004 28 1 6.6226 -3.4778 -0.6160 29 1 7.8754 -2.2444 -0.3372 30 1 9.4920 -5.3970 0.6670 31 1 5.4510 0.2759 0.8201 32 1 7.1410 -0.2224 1.0725 33 1 4.7654 0.9371 -1.7496 34 1 5.9466 0.3838 -2.9608 35 1 5.1640 -0.7930 -1.8787 36 1 7.7351 2.0285 0.0136 37 1 7.2102 2.3681 -1.6532 38 1 6.0201 2.3592 -0.3298 39 1 7.7945 -1.3085 -1.6353 40 1 8.2465 0.2259 -2.4157 41 1 8.7712 -0.1134 -0.7487 42 1 1.8021 -2.1451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294751106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:17 Heat of formation + Delta-G solvation = 3.895612 kcal Electronic energy + Delta-G solvation = -22820.758346 eV Core-core repulsion = 19700.068131 eV Total energy + Delta-G solvation = -3120.690215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69376 -38.11186 -36.82194 -33.91206 -32.46540 -30.85352 -28.44230 -27.32714 -27.24927 -26.90131 -25.75865 -24.20834 -22.09431 -19.53951 -18.98753 -18.52569 -17.29449 -16.61540 -15.74587 -15.49669 -15.13089 -14.79292 -14.29618 -14.24150 -13.78012 -13.58996 -13.26545 -12.98147 -12.76579 -12.50829 -12.31673 -12.20232 -11.87978 -11.83439 -11.76289 -11.38282 -11.28870 -11.19018 -10.93328 -10.92576 -10.84303 -10.59266 -10.24385 -10.16236 -9.74491 -9.54090 -9.11276 -8.52827 -8.41436 -7.76861 -7.66038 -6.04477 -4.08282 0.84984 1.77309 2.20812 2.66365 3.30119 3.38059 3.42187 3.79680 3.90464 4.45429 4.87725 4.94402 4.97723 5.10582 5.20735 5.28685 5.34820 5.45509 5.53140 5.61915 5.65302 5.72507 5.74300 5.87455 5.94420 5.96749 6.07453 6.11669 6.16547 6.21041 6.31306 6.38506 6.52750 6.57246 6.64919 6.70734 7.10188 7.40294 7.50313 7.91759 8.23128 8.32507 8.87742 9.02936 9.56267 11.03441 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.005768 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.673186 B = 4853.262440 C = 5915.130236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.120 4.120 3 C -0.303 4.303 4 S 0.258 5.742 5 C -0.256 4.256 6 C 0.576 3.424 7 O -0.528 6.528 8 N -0.587 5.587 9 C 0.239 3.761 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.110 3.890 19 C -0.087 4.087 20 C -0.169 4.169 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.069 4.069 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.154 0.846 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 16.030 -3.244 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C -0.439 4.439 4 S 0.530 5.470 5 C -0.377 4.377 6 C 0.362 3.638 7 O -0.406 6.406 8 N -0.317 5.317 9 C 0.121 3.879 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.017 4.017 19 C -0.088 4.088 20 C -0.227 4.227 21 C -0.197 4.197 22 C -0.204 4.204 23 C -0.102 4.102 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.523 16.189 -3.343 18.162 hybrid contribution -1.143 -1.195 0.992 1.928 sum -8.666 14.994 -2.351 17.477 Atomic orbital electron populations 1.20482 0.90478 1.02265 1.01881 1.18624 0.97217 0.91731 1.05718 1.25957 1.04138 1.02558 1.11250 1.84048 0.99023 0.99230 1.64698 1.25020 0.98440 0.96948 1.17280 1.16954 0.81807 0.86980 0.78040 1.90806 1.80907 1.18392 1.50525 1.48078 1.06414 1.08330 1.68865 1.19589 0.84916 0.85500 0.97901 1.21477 1.20727 1.20323 0.93865 0.92425 1.24905 0.95807 0.96225 0.97058 1.69932 1.25138 1.28891 1.29408 0.86463 0.77762 0.79107 0.84220 1.19824 1.20885 1.20990 1.21977 1.00423 0.82627 0.96698 1.20989 0.96789 0.95370 0.95698 1.22728 0.98279 1.02803 0.98887 1.21882 1.01413 0.94460 1.01902 1.22096 0.95761 1.02396 1.00120 1.20537 0.91284 0.99571 0.98826 0.91668 0.92050 0.91688 0.82823 0.93929 0.93128 0.92786 0.91444 0.88677 0.90891 0.92294 0.91810 0.92176 0.92246 0.92812 0.90470 0.93304 0.92332 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.13 36.01 0.36 -0.58 16 2 C -0.12 -1.59 5.78 -106.45 -0.62 -2.21 16 3 C -0.30 -3.70 10.67 29.18 0.31 -3.38 16 4 S 0.26 3.37 11.96 -107.50 -1.29 2.08 16 5 C -0.26 -4.51 5.34 -36.79 -0.20 -4.70 16 6 C 0.58 12.69 6.14 -12.89 -0.08 12.61 16 7 O -0.53 -13.87 16.47 5.19 0.09 -13.79 16 8 N -0.59 -12.48 1.92 -176.64 -0.34 -12.82 16 9 C 0.24 6.10 4.31 -5.20 -0.02 6.08 16 10 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.11 1.81 4.37 -4.04 -0.02 1.80 16 19 C -0.09 -1.21 0.59 -154.52 -0.09 -1.30 16 20 C -0.17 -2.36 7.11 37.15 0.26 -2.09 16 21 C -0.14 -1.47 8.30 37.15 0.31 -1.16 16 22 C -0.15 -2.22 7.36 37.16 0.27 -1.94 16 23 C -0.07 -1.12 9.80 -40.44 -0.40 -1.51 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.04 1.24 7.48 -51.93 -0.39 0.85 16 29 H 0.05 1.26 5.15 -51.93 -0.27 0.99 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.02 3.65 -18.83 -0.07 0.96 16 32 H 0.10 1.61 8.12 -51.93 -0.42 1.19 16 33 H 0.07 0.91 4.59 -23.16 -0.11 0.80 16 34 H 0.06 0.75 8.00 -51.93 -0.42 0.33 16 35 H 0.06 1.08 5.00 -51.93 -0.26 0.82 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 38 H 0.05 0.51 6.78 -51.93 -0.35 0.15 16 39 H 0.08 1.41 5.33 -51.93 -0.28 1.13 16 40 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -32.11 332.55 -7.03 -39.14 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.90 Total: 0.83 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.32 Total: -11.85 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.40 Total: -38.29 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.29 Total: 2.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.11 -7.03 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294751106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds