Wall clock time and date at job start Tue Mar 31 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33826 * 122.44559 * 2 1 4 4 S 1.70608 * 110.95104 * 179.78509 * 3 2 1 5 5 C 1.75830 * 91.56572 * 0.30618 * 4 3 2 6 6 C 1.46584 * 125.45675 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99934 * 186.66810 * 6 5 4 8 8 N 1.34780 * 120.00124 * 6.67793 * 6 5 4 9 9 C 1.46501 * 119.99928 * 184.09417 * 8 6 5 10 10 C 1.50696 * 109.46875 * 269.99398 * 9 8 6 11 11 H 1.07996 * 120.00298 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99730 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99940 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47357 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47196 * 119.99776 * 14 12 10 17 17 H 1.48504 * 109.47110 * 239.99964 * 14 12 10 18 18 C 1.46496 * 120.00060 * 4.08641 * 8 6 5 19 19 C 1.53002 * 109.47577 * 263.22076 * 18 8 6 20 20 C 1.52995 * 109.47037 * 53.80672 * 19 18 8 21 21 C 1.52991 * 109.47143 * 173.80829 * 19 18 8 22 22 C 1.52998 * 109.46692 * 293.80930 * 19 18 8 23 23 C 1.36643 * 109.08298 * 359.69710 * 5 4 3 24 24 H 1.09007 * 109.46742 * 269.97687 * 1 2 3 25 25 H 1.09001 * 109.47392 * 29.97356 * 1 2 3 26 26 H 1.09001 * 109.46782 * 149.98093 * 1 2 3 27 27 H 1.08001 * 124.51938 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46866 * 29.99843 * 9 8 6 29 29 H 1.08999 * 109.46956 * 149.99830 * 9 8 6 30 30 H 0.97004 * 120.00289 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47179 * 23.22324 * 18 8 6 32 32 H 1.09001 * 109.46997 * 143.21537 * 18 8 6 33 33 H 1.09010 * 109.47148 * 78.52645 * 20 19 18 34 34 H 1.08995 * 109.47760 * 198.52787 * 20 19 18 35 35 H 1.09007 * 109.47379 * 318.53092 * 20 19 18 36 36 H 1.09002 * 109.47720 * 60.00045 * 21 19 18 37 37 H 1.09007 * 109.47381 * 180.02562 * 21 19 18 38 38 H 1.09001 * 109.47226 * 299.99975 * 21 19 18 39 39 H 1.09002 * 109.47051 * 60.00142 * 22 19 18 40 40 H 1.09007 * 109.46485 * 179.97438 * 22 19 18 41 41 H 1.08994 * 109.47130 * 299.99550 * 22 19 18 42 42 H 1.07998 * 123.34946 * 180.25122 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1294 0.0000 4 16 3.8968 0.7894 0.0060 5 6 3.5937 -0.9426 -0.0009 6 6 4.6232 -1.9860 -0.0004 7 8 4.3059 -3.1540 -0.1279 8 7 5.9212 -1.6520 0.1413 9 6 6.9572 -2.6841 0.0521 10 6 7.2156 -3.2561 1.4221 11 1 6.6632 -2.8880 2.2740 12 6 8.1574 -4.2494 1.5879 13 7 8.8297 -4.6979 0.5504 14 14 8.4773 -4.9590 3.2860 15 1 7.5968 -4.2890 4.2764 16 1 8.1920 -6.4163 3.2753 17 1 9.8980 -4.7353 3.6563 18 6 6.2963 -0.2569 0.3845 19 6 6.6887 0.4039 -0.9385 20 6 5.5601 0.2197 -1.9550 21 6 6.9310 1.8972 -0.7106 22 6 7.9672 -0.2446 -1.4729 23 6 2.2447 -1.1600 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.8024 2.1233 0.0004 28 1 6.6226 -3.4778 -0.6160 29 1 7.8754 -2.2444 -0.3372 30 1 9.4920 -5.3970 0.6670 31 1 5.4510 0.2759 0.8201 32 1 7.1410 -0.2224 1.0725 33 1 4.7654 0.9371 -1.7496 34 1 5.9466 0.3838 -2.9608 35 1 5.1640 -0.7930 -1.8787 36 1 7.7351 2.0285 0.0136 37 1 7.2102 2.3681 -1.6532 38 1 6.0201 2.3592 -0.3298 39 1 7.7945 -1.3085 -1.6353 40 1 8.2465 0.2259 -2.4157 41 1 8.7712 -0.1134 -0.7487 42 1 1.8021 -2.1451 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294751106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:17 Heat of formation + Delta-G solvation = -15.547913 kcal Electronic energy + Delta-G solvation = -22821.601481 eV Core-core repulsion = 19700.068131 eV Total energy + Delta-G solvation = -3121.533349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25843 -39.28201 -38.25098 -35.72546 -34.41708 -32.14035 -29.99793 -28.54125 -28.34638 -28.10952 -27.18982 -25.88458 -23.77102 -20.97173 -20.14049 -19.77970 -18.83355 -18.56698 -17.33985 -16.86279 -16.66319 -16.45992 -15.69429 -15.53879 -15.04130 -14.98446 -14.45464 -14.35645 -14.04839 -13.96746 -13.72738 -13.47702 -13.33714 -12.96751 -12.91588 -12.79371 -12.72442 -12.58889 -12.50199 -12.28306 -12.23181 -12.11502 -11.86816 -11.72058 -11.51959 -10.93426 -10.83355 -10.60729 -9.79316 -9.39218 -8.84128 -8.23135 -6.37038 -0.38459 0.56894 1.10427 1.34052 1.36864 1.47261 1.49410 2.17280 2.31307 2.40823 3.06101 3.57263 3.74597 3.77835 4.04357 4.16707 4.27962 4.33200 4.49865 4.51093 4.68554 4.75703 4.77104 4.84703 4.86499 4.88977 4.95893 5.04581 5.07072 5.09947 5.15820 5.19472 5.21412 5.36670 5.42248 5.50250 5.53828 5.57735 5.59548 5.80305 6.06394 6.61927 6.71146 7.22113 7.37547 8.83699 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.005768 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.673186 B = 4853.262440 C = 5915.130236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.134 4.134 3 C -0.279 4.279 4 S 0.317 5.683 5 C -0.308 4.308 6 C 0.569 3.431 7 O -0.594 6.594 8 N -0.589 5.589 9 C 0.258 3.742 10 C -0.544 4.544 11 H 0.047 0.953 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.101 3.899 19 C -0.082 4.082 20 C -0.166 4.166 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.069 4.069 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.195 0.805 28 H -0.009 1.009 29 H 0.055 0.945 30 H 0.267 0.733 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 20.088 -2.525 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C -0.415 4.415 4 S 0.590 5.410 5 C -0.428 4.428 6 C 0.358 3.642 7 O -0.478 6.478 8 N -0.317 5.317 9 C 0.137 3.863 10 C -0.583 4.583 11 H 0.065 0.935 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.789 3.211 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.024 4.024 19 C -0.083 4.083 20 C -0.224 4.224 21 C -0.191 4.191 22 C -0.202 4.202 23 C -0.104 4.104 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.213 0.787 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.362 20.308 -2.622 22.118 hybrid contribution -0.938 -2.400 0.707 2.672 sum -9.300 17.908 -1.915 20.269 Atomic orbital electron populations 1.20544 0.88075 1.03440 1.02864 1.18814 0.98934 0.90711 1.06082 1.26416 1.03283 1.03969 1.07876 1.83434 0.99759 0.94505 1.63345 1.24620 0.97576 0.99127 1.21496 1.17606 0.82603 0.87367 0.76576 1.90737 1.82009 1.21424 1.53607 1.47994 1.05620 1.09574 1.68553 1.19072 0.85926 0.85534 0.95732 1.21728 1.20922 1.21187 0.94469 0.93470 1.25778 0.95438 0.96366 1.01155 1.70042 1.25564 1.29325 1.31526 0.85414 0.78430 0.77956 0.79282 1.19519 1.20808 1.19032 1.22335 1.01140 0.80273 0.98630 1.20987 0.95886 0.97609 0.93791 1.22712 0.98791 1.01054 0.99848 1.21867 1.02691 0.91096 1.03448 1.22045 0.96619 1.00042 1.01498 1.20717 0.91260 1.00390 0.98031 0.90729 0.89666 0.91830 0.78741 0.99100 0.92726 0.92364 0.89512 0.89232 0.88872 0.90808 0.95566 0.91382 0.90211 0.91044 0.94705 0.90794 0.92527 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 10.13 71.24 0.72 -0.85 16 2 C -0.13 -3.21 5.78 -21.05 -0.12 -3.34 16 3 C -0.28 -5.54 10.67 66.82 0.71 -4.83 16 4 S 0.32 7.37 11.96 -56.49 -0.68 6.69 16 5 C -0.31 -11.06 5.34 24.08 0.13 -10.93 16 6 C 0.57 26.95 6.14 86.42 0.53 27.48 16 7 O -0.59 -34.38 16.47 -4.36 -0.07 -34.45 16 8 N -0.59 -26.67 1.92 -830.98 -1.60 -28.27 16 9 C 0.26 14.22 4.31 85.63 0.37 14.59 16 10 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 11 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 12 C 0.01 0.69 5.46 84.66 0.46 1.15 16 13 N -0.92 -56.34 13.29 21.45 0.28 -56.05 16 14 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C 0.10 3.35 4.37 86.38 0.38 3.73 16 19 C -0.08 -2.16 0.59 -52.19 -0.03 -2.19 16 20 C -0.17 -4.44 7.11 71.98 0.51 -3.93 16 21 C -0.13 -2.31 8.30 71.98 0.60 -1.71 16 22 C -0.14 -4.39 7.36 71.98 0.53 -3.86 16 23 C -0.07 -2.26 9.80 21.71 0.21 -2.05 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 26 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 28 H -0.01 -0.59 7.48 -2.39 -0.02 -0.61 16 29 H 0.06 2.94 5.15 -2.39 -0.01 2.93 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.09 2.51 3.65 -23.43 -0.09 2.43 16 32 H 0.09 3.05 8.12 -2.39 -0.02 3.03 16 33 H 0.09 2.03 4.59 -20.67 -0.09 1.93 16 34 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 35 H 0.03 0.91 5.00 -2.38 -0.01 0.89 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 0.99 6.78 -2.39 -0.02 0.97 16 39 H 0.03 1.34 5.33 -2.39 -0.01 1.33 16 40 H 0.07 1.83 8.13 -2.38 -0.02 1.81 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -76.94 332.55 6.06 -70.88 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.85 Total: 12.07 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 5.24 Total: -18.81 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.31 Total: -84.32 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.07 Total: -34.45 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -0.68 Total: 6.69 kcal Total: -76.94 6.06 -70.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294751106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.332 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds