Wall clock time and date at job start Tue Mar 31 2020 07:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.53004 * 109.47006 * 317.86687 * 3 2 1 5 5 C 1.52993 * 109.47116 * 197.86695 * 3 2 1 6 6 N 1.46504 * 109.47246 * 77.86567 * 3 2 1 7 7 C 1.46503 * 119.99817 * 248.41712 * 6 3 2 8 8 C 1.50701 * 109.46649 * 269.99789 * 7 6 3 9 9 H 1.08003 * 120.00295 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00005 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99915 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00504 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47087 * 59.99339 * 12 10 8 14 14 H 1.48496 * 109.47453 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46986 * 299.99981 * 12 10 8 16 16 C 1.34770 * 119.99846 * 68.41104 * 6 3 2 17 17 O 1.21639 * 119.99997 * 204.25082 * 16 6 3 18 18 C 1.47187 * 120.00060 * 24.25536 * 16 6 3 19 19 C 1.44433 * 123.45871 * 318.53302 * 18 16 6 20 20 C 1.32775 * 113.08456 * 180.02562 * 19 18 16 21 21 S 1.75510 * 110.57262 * 0.02562 * 20 19 18 22 22 C 1.36006 * 123.46440 * 138.57861 * 18 16 6 23 23 C 1.50700 * 124.59127 * 0.22103 * 22 18 16 24 24 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47150 * 300.00191 * 1 2 3 26 26 H 1.09003 * 109.47297 * 59.99923 * 1 2 3 27 27 H 1.08994 * 109.47383 * 239.99874 * 2 1 3 28 28 H 1.08995 * 109.47007 * 119.99890 * 2 1 3 29 29 H 1.08991 * 109.47072 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47165 * 300.00297 * 4 3 2 31 31 H 1.09003 * 109.46692 * 59.99721 * 4 3 2 32 32 H 1.08994 * 109.47498 * 255.17944 * 5 3 2 33 33 H 1.09004 * 109.47450 * 15.18459 * 5 3 2 34 34 H 1.09005 * 109.47014 * 135.18362 * 5 3 2 35 35 H 1.08996 * 109.47238 * 29.99958 * 7 6 3 36 36 H 1.09000 * 109.47125 * 150.00007 * 7 6 3 37 37 H 0.96992 * 120.00260 * 180.02562 * 11 10 8 38 38 H 1.07995 * 123.45635 * 0.02562 * 19 18 16 39 39 H 1.07993 * 124.71432 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46900 * 179.72521 * 23 22 18 41 41 H 1.08996 * 109.47355 * 299.72783 * 23 22 18 42 42 H 1.09005 * 109.46752 * 59.73094 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2014 2.2800 -0.9677 5 6 3.5043 1.4657 -0.4425 6 7 1.9291 1.9998 1.3504 7 6 0.9636 3.0668 1.6254 8 6 1.6170 4.4058 1.3990 9 1 2.6483 4.4569 1.0824 10 6 0.8985 5.5658 1.5971 11 7 -0.3573 5.5036 1.9832 12 14 1.7079 7.2255 1.3159 13 1 2.1629 7.3217 -0.0945 14 1 0.7294 8.3072 1.5947 15 1 2.8750 7.3672 2.2231 16 6 2.7150 1.5306 2.3396 17 8 2.3626 1.6374 3.4989 18 6 3.9999 0.8892 2.0171 19 6 4.1771 -0.0302 0.9174 20 6 5.4199 -0.4863 0.8151 21 16 6.4334 0.1978 2.0742 22 6 5.1421 1.1006 2.7245 23 6 5.2500 2.0055 3.9248 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5644 3.3076 -0.9674 30 1 1.2839 1.8654 -1.9725 31 1 0.1581 2.2633 -0.6524 32 1 4.1435 1.6310 0.4247 33 1 3.7593 0.5122 -0.9053 34 1 3.6536 2.2704 -1.1625 35 1 0.1075 2.9629 0.9589 36 1 0.6290 2.9961 2.6604 37 1 -0.8629 6.3196 2.1222 38 1 3.3805 -0.3173 0.2470 39 1 5.7597 -1.1821 0.0624 40 1 6.2725 1.9883 4.3020 41 1 4.9857 3.0231 3.6375 42 1 4.5698 1.6593 4.7031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297574181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:43 Heat of formation + Delta-G solvation = 62.440776 kcal Electronic energy + Delta-G solvation = -23488.093115 eV Core-core repulsion = 20369.941609 eV Total energy + Delta-G solvation = -3118.151506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92497 -37.06911 -36.93122 -33.30415 -31.96386 -31.89307 -29.75375 -28.68302 -26.77029 -26.27078 -23.55394 -23.32075 -22.39723 -20.65900 -19.92117 -17.07665 -16.99853 -16.52257 -16.17349 -15.32381 -14.75676 -14.68178 -14.41017 -14.15751 -13.91713 -13.37725 -13.18318 -12.87917 -12.60869 -12.36918 -12.22265 -12.10775 -11.90800 -11.55868 -11.25350 -11.21649 -11.13694 -11.01370 -10.82967 -10.76893 -10.71412 -10.51562 -10.29796 -10.07731 -9.89390 -9.61602 -8.99664 -8.47085 -8.42256 -7.77575 -7.50984 -6.05414 -4.10411 1.19229 1.78639 2.16551 2.42960 3.28990 3.34113 3.36024 3.65351 3.96906 4.42439 4.85187 4.97546 5.06570 5.10523 5.27670 5.34585 5.41030 5.51753 5.55970 5.62071 5.79772 5.82735 5.92578 5.97881 6.05759 6.08428 6.13530 6.20746 6.27360 6.34310 6.38332 6.42210 6.49158 6.53186 6.70617 6.95730 7.18568 7.48081 7.61687 7.92957 8.23748 8.47173 8.86875 9.05859 9.54408 11.01797 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.006678 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.556979 B = 4191.569832 C = 5146.159027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.170 3.830 4 C -0.149 4.149 5 C -0.198 4.198 6 N -0.590 5.590 7 C 0.245 3.755 8 C -0.526 4.526 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.582 3.418 17 O -0.535 6.535 18 C -0.165 4.165 19 C -0.087 4.087 20 C -0.281 4.281 21 S 0.125 5.875 22 C -0.151 4.151 23 C -0.085 4.085 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.303 -11.871 -5.642 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.084 3.916 4 C -0.206 4.206 5 C -0.254 4.254 6 N -0.322 5.322 7 C 0.126 3.874 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.368 3.632 17 O -0.413 6.413 18 C -0.183 4.183 19 C -0.115 4.115 20 C -0.414 4.414 21 S 0.389 5.611 22 C -0.270 4.270 23 C -0.143 4.143 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.196 0.804 39 H 0.179 0.821 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.433 -11.848 -4.621 16.450 hybrid contribution -1.031 1.229 -0.732 1.763 sum 9.403 -10.619 -5.353 15.160 Atomic orbital electron populations 1.21847 0.95075 1.00963 1.02989 1.22368 0.97578 0.96593 1.01677 1.20319 0.94875 0.92350 0.84029 1.22211 1.00835 1.01215 0.96353 1.23826 0.97080 1.01442 1.03080 1.48076 1.39145 1.37970 1.07026 1.19357 0.87187 0.82705 0.98172 1.21426 0.98207 0.90675 1.46214 0.92576 1.24907 0.94839 0.99028 0.95112 1.69921 1.08272 1.28541 1.46365 0.86633 0.79189 0.83408 0.78646 1.20256 1.21188 1.20271 1.17362 0.82698 0.77853 0.85296 1.90718 1.73418 1.57031 1.20085 1.20539 0.95928 1.03583 0.98212 1.22342 0.98981 0.94215 0.95956 1.25039 0.97556 1.11562 1.07261 1.82768 1.12498 1.40949 1.24858 1.24266 0.97076 1.03626 1.02060 1.20405 1.01965 0.98224 0.93735 0.93405 0.91878 0.91979 0.91228 0.91202 0.90069 0.92962 0.91071 0.88002 0.91234 0.92348 0.94198 0.93954 0.92671 0.80438 0.82099 0.91923 0.90053 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.94 37.16 0.33 -1.79 16 2 C -0.14 -2.00 3.84 -26.73 -0.10 -2.10 16 3 C 0.17 2.83 0.77 -131.82 -0.10 2.73 16 4 C -0.15 -2.50 6.17 37.16 0.23 -2.27 16 5 C -0.20 -2.96 7.29 37.15 0.27 -2.69 16 6 N -0.59 -12.48 2.39 -161.52 -0.39 -12.86 16 7 C 0.24 6.21 4.70 -5.19 -0.02 6.19 16 8 C -0.53 -14.34 8.32 -34.44 -0.29 -14.62 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 12 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.58 12.66 6.25 -12.63 -0.08 12.58 16 17 O -0.53 -13.48 15.48 5.24 0.08 -13.40 16 18 C -0.17 -2.94 3.89 -104.63 -0.41 -3.34 16 19 C -0.09 -1.23 4.69 -39.02 -0.18 -1.41 16 20 C -0.28 -3.43 11.09 28.86 0.32 -3.11 16 21 S 0.12 1.59 22.95 -107.50 -2.47 -0.88 16 22 C -0.15 -2.47 6.33 -35.11 -0.22 -2.70 16 23 C -0.08 -1.35 9.36 36.01 0.34 -1.01 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16 27 H 0.07 0.76 7.43 -51.93 -0.39 0.38 16 28 H 0.07 1.03 5.86 -51.93 -0.30 0.73 16 29 H 0.08 1.58 7.05 -51.93 -0.37 1.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.26 4.79 -51.93 -0.25 1.01 16 32 H 0.10 1.72 3.49 -69.51 -0.24 1.48 16 33 H 0.07 0.83 5.39 -51.93 -0.28 0.55 16 34 H 0.06 0.87 7.66 -51.93 -0.40 0.48 16 35 H 0.04 1.02 5.89 -51.93 -0.31 0.71 16 36 H 0.04 1.24 7.29 -51.93 -0.38 0.86 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.18 2.28 2.17 -52.49 -0.11 2.17 16 39 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.09 1.53 7.57 -51.93 -0.39 1.14 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -30.84 327.87 -7.96 -38.79 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.83 Total: 4.04 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -0.01 Total: -11.89 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.35 Total: -38.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.84 -7.96 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297574181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.235 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds