Wall clock time and date at job start Tue Mar 31 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.53004 * 109.47006 * 317.86687 * 3 2 1 5 5 C 1.52993 * 109.47116 * 197.86695 * 3 2 1 6 6 N 1.46504 * 109.47246 * 77.86567 * 3 2 1 7 7 C 1.46503 * 119.99817 * 248.41712 * 6 3 2 8 8 C 1.50701 * 109.46649 * 269.99789 * 7 6 3 9 9 H 1.08003 * 120.00295 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00005 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99915 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00504 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47087 * 59.99339 * 12 10 8 14 14 H 1.48496 * 109.47453 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46986 * 299.99981 * 12 10 8 16 16 C 1.34770 * 119.99846 * 68.41104 * 6 3 2 17 17 O 1.21639 * 119.99997 * 204.25082 * 16 6 3 18 18 C 1.47187 * 120.00060 * 24.25536 * 16 6 3 19 19 C 1.44433 * 123.45871 * 318.53302 * 18 16 6 20 20 C 1.32775 * 113.08456 * 180.02562 * 19 18 16 21 21 S 1.75510 * 110.57262 * 0.02562 * 20 19 18 22 22 C 1.36006 * 123.46440 * 138.57861 * 18 16 6 23 23 C 1.50700 * 124.59127 * 0.22103 * 22 18 16 24 24 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47150 * 300.00191 * 1 2 3 26 26 H 1.09003 * 109.47297 * 59.99923 * 1 2 3 27 27 H 1.08994 * 109.47383 * 239.99874 * 2 1 3 28 28 H 1.08995 * 109.47007 * 119.99890 * 2 1 3 29 29 H 1.08991 * 109.47072 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47165 * 300.00297 * 4 3 2 31 31 H 1.09003 * 109.46692 * 59.99721 * 4 3 2 32 32 H 1.08994 * 109.47498 * 255.17944 * 5 3 2 33 33 H 1.09004 * 109.47450 * 15.18459 * 5 3 2 34 34 H 1.09005 * 109.47014 * 135.18362 * 5 3 2 35 35 H 1.08996 * 109.47238 * 29.99958 * 7 6 3 36 36 H 1.09000 * 109.47125 * 150.00007 * 7 6 3 37 37 H 0.96992 * 120.00260 * 180.02562 * 11 10 8 38 38 H 1.07995 * 123.45635 * 0.02562 * 19 18 16 39 39 H 1.07993 * 124.71432 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46900 * 179.72521 * 23 22 18 41 41 H 1.08996 * 109.47355 * 299.72783 * 23 22 18 42 42 H 1.09005 * 109.46752 * 59.73094 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2014 2.2800 -0.9677 5 6 3.5043 1.4657 -0.4425 6 7 1.9291 1.9998 1.3504 7 6 0.9636 3.0668 1.6254 8 6 1.6170 4.4058 1.3990 9 1 2.6483 4.4569 1.0824 10 6 0.8985 5.5658 1.5971 11 7 -0.3573 5.5036 1.9832 12 14 1.7079 7.2255 1.3159 13 1 2.1629 7.3217 -0.0945 14 1 0.7294 8.3072 1.5947 15 1 2.8750 7.3672 2.2231 16 6 2.7150 1.5306 2.3396 17 8 2.3626 1.6374 3.4989 18 6 3.9999 0.8892 2.0171 19 6 4.1771 -0.0302 0.9174 20 6 5.4199 -0.4863 0.8151 21 16 6.4334 0.1978 2.0742 22 6 5.1421 1.1006 2.7245 23 6 5.2500 2.0055 3.9248 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5644 3.3076 -0.9674 30 1 1.2839 1.8654 -1.9725 31 1 0.1581 2.2633 -0.6524 32 1 4.1435 1.6310 0.4247 33 1 3.7593 0.5122 -0.9053 34 1 3.6536 2.2704 -1.1625 35 1 0.1075 2.9629 0.9589 36 1 0.6290 2.9961 2.6604 37 1 -0.8629 6.3196 2.1222 38 1 3.3805 -0.3173 0.2470 39 1 5.7597 -1.1821 0.0624 40 1 6.2725 1.9883 4.3020 41 1 4.9857 3.0231 3.6375 42 1 4.5698 1.6593 4.7031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297574181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:42 Heat of formation + Delta-G solvation = 43.961331 kcal Electronic energy + Delta-G solvation = -23488.894444 eV Core-core repulsion = 20369.941609 eV Total energy + Delta-G solvation = -3118.952835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30392 -38.67164 -38.24556 -35.26781 -33.64860 -33.15746 -31.02589 -30.29413 -28.18728 -27.85505 -25.04174 -24.72957 -23.90612 -22.02631 -21.28156 -18.66453 -18.42609 -18.21460 -17.54286 -17.01852 -16.36802 -16.09530 -15.85363 -15.62876 -15.21127 -14.67997 -14.55211 -14.31930 -14.16448 -13.83134 -13.65438 -13.47931 -13.27172 -13.11614 -12.91910 -12.71567 -12.56006 -12.47929 -12.34885 -12.19856 -12.12569 -11.91635 -11.78708 -11.65807 -11.51867 -11.09732 -10.66038 -10.60841 -9.61232 -9.31245 -8.78916 -8.20498 -6.35262 -0.01813 0.68538 1.08173 1.26179 1.34538 1.37466 1.45110 2.08206 2.34493 2.47266 3.07567 3.71455 3.73499 3.80685 3.93090 4.13735 4.20983 4.35746 4.43542 4.47594 4.55411 4.64221 4.73919 4.79900 4.86444 4.91662 4.96462 5.00964 5.03851 5.07890 5.16103 5.18055 5.21287 5.27389 5.36733 5.40556 5.52270 5.55688 5.64406 5.94087 6.10339 6.71560 6.83144 7.25536 7.42329 8.85304 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.006678 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.556979 B = 4191.569832 C = 5146.159027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.159 3.841 4 C -0.144 4.144 5 C -0.194 4.194 6 N -0.593 5.593 7 C 0.265 3.735 8 C -0.533 4.533 9 H 0.050 0.950 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.960 3.040 13 H -0.261 1.261 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.572 3.428 17 O -0.592 6.592 18 C -0.188 4.188 19 C -0.099 4.099 20 C -0.261 4.261 21 S 0.195 5.805 22 C -0.182 4.182 23 C -0.083 4.083 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.033 0.967 36 H -0.013 1.013 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.205 0.795 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 -13.816 -8.646 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.075 3.925 4 C -0.201 4.201 5 C -0.250 4.250 6 N -0.324 5.324 7 C 0.144 3.856 8 C -0.572 4.572 9 H 0.069 0.931 10 C -0.187 4.187 11 N -0.566 5.566 12 Si 0.785 3.215 13 H -0.185 1.185 14 H -0.204 1.204 15 H -0.204 1.204 16 C 0.360 3.640 17 O -0.474 6.474 18 C -0.206 4.206 19 C -0.126 4.126 20 C -0.394 4.394 21 S 0.460 5.540 22 C -0.301 4.301 23 C -0.141 4.141 24 H 0.091 0.909 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.075 0.925 38 H 0.209 0.791 39 H 0.222 0.778 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.440 -13.817 -7.671 20.746 hybrid contribution -1.924 1.770 0.241 2.625 sum 11.516 -12.048 -7.431 18.248 Atomic orbital electron populations 1.21833 0.95631 1.02013 1.01310 1.22376 0.97087 0.94638 1.03561 1.20763 0.96751 0.93736 0.81230 1.22156 0.99432 0.99756 0.98765 1.23824 0.94916 1.03722 1.02522 1.48085 1.38108 1.36930 1.09312 1.18761 0.88127 0.84046 0.94634 1.21605 0.97894 0.91707 1.45983 0.93133 1.25774 0.95360 1.02897 0.94702 1.70051 1.09694 1.29623 1.47258 0.85583 0.78088 0.78700 0.79178 1.18547 1.20435 1.20359 1.18121 0.84015 0.77374 0.84493 1.90667 1.74812 1.59570 1.22314 1.20389 0.93869 1.05458 1.00877 1.22259 1.00417 0.94367 0.95582 1.25573 0.96398 1.10409 1.07045 1.82525 1.09606 1.38301 1.23528 1.24550 0.98881 1.04529 1.02135 1.20326 1.03352 0.96768 0.93664 0.90940 0.96195 0.91081 0.86304 0.91999 0.93352 0.88689 0.93016 0.89668 0.86885 0.92646 0.94881 0.99441 0.92488 0.79056 0.77790 0.88525 0.92791 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.94 71.98 0.64 -3.47 16 2 C -0.14 -3.54 3.84 30.59 0.12 -3.42 16 3 C 0.16 5.18 0.77 3.60 0.00 5.19 16 4 C -0.14 -4.78 6.17 71.98 0.44 -4.33 16 5 C -0.19 -5.26 7.29 71.98 0.52 -4.74 16 6 N -0.59 -26.48 2.39 -783.16 -1.87 -28.35 16 7 C 0.27 14.59 4.70 85.63 0.40 15.00 16 8 C -0.53 -30.67 8.32 25.60 0.21 -30.46 16 9 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 10 C 0.01 0.68 5.46 84.65 0.46 1.14 16 11 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 12 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 13 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C 0.57 26.36 6.25 86.59 0.54 26.90 16 17 O -0.59 -32.64 15.48 -4.16 -0.06 -32.70 16 18 C -0.19 -6.64 3.89 -19.87 -0.08 -6.72 16 19 C -0.10 -2.48 4.69 22.67 0.11 -2.37 16 20 C -0.26 -4.97 11.09 66.64 0.74 -4.23 16 21 S 0.20 4.21 22.95 -56.49 -1.30 2.91 16 22 C -0.18 -5.83 6.33 25.17 0.16 -5.67 16 23 C -0.08 -2.74 9.36 71.24 0.67 -2.07 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 1.79 6.35 -2.39 -0.02 1.77 16 27 H 0.12 1.92 7.43 -2.39 -0.02 1.90 16 28 H 0.06 1.72 5.86 -2.39 -0.01 1.71 16 29 H 0.05 1.91 7.05 -2.39 -0.02 1.89 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.89 4.79 -2.39 -0.01 1.88 16 32 H 0.09 2.73 3.49 -18.90 -0.07 2.66 16 33 H 0.11 2.06 5.39 -2.39 -0.01 2.05 16 34 H 0.05 1.52 7.66 -2.38 -0.02 1.50 16 35 H 0.03 1.84 5.89 -2.39 -0.01 1.83 16 36 H -0.01 -0.81 7.29 -2.39 -0.02 -0.83 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.19 4.09 2.17 -2.91 -0.01 4.09 16 39 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.10 2.39 8.11 -2.39 -0.02 2.37 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.48 7.57 -2.38 -0.02 2.46 16 Total: -1.00 -75.17 327.87 5.01 -70.16 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.98 Total: 16.24 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.95 Total: -19.26 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.58 Total: -84.37 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.06 Total: -32.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.30 Total: 2.91 kcal Total: -75.17 5.01 -70.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297574181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.125 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds