Wall clock time and date at job start Tue Mar 31 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46606 * 2 1 4 4 C 1.38367 * 119.84868 * 90.00264 * 3 2 1 5 5 C 1.37956 * 120.14494 * 180.02562 * 4 3 2 6 6 C 1.39589 * 119.84914 * 359.97438 * 5 4 3 7 7 C 1.47817 * 120.14211 * 179.97438 * 6 5 4 8 8 O 1.21561 * 120.00044 * 359.72362 * 7 6 5 9 9 N 1.34779 * 119.99652 * 180.02562 * 7 6 5 10 10 C 1.39861 * 119.99896 * 174.58606 * 9 7 6 11 11 C 1.39311 * 119.94824 * 146.34743 * 10 9 7 12 12 C 1.38489 * 120.42382 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32275 * 359.97438 * 12 11 10 14 14 C 1.40743 * 119.89047 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20523 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99587 * 151.78949 * 15 14 13 17 17 C 1.39930 * 120.00389 * 331.79025 * 15 14 13 18 18 N 1.30836 * 119.99716 * 348.98645 * 17 15 14 19 19 Si 1.86801 * 120.00272 * 168.99369 * 17 15 14 20 20 H 1.48497 * 109.47343 * 94.98941 * 19 17 15 21 21 H 1.48501 * 109.46776 * 214.98851 * 19 17 15 22 22 H 1.48498 * 109.46794 * 334.98802 * 19 17 15 23 23 C 1.38263 * 119.94805 * 326.07694 * 10 9 7 24 24 C 1.39586 * 119.71181 * 0.25432 * 6 5 4 25 25 C 1.37953 * 119.85213 * 359.51615 * 24 6 5 26 26 H 1.08994 * 109.47478 * 59.99856 * 1 2 3 27 27 H 1.09005 * 109.46700 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47166 * 299.99606 * 1 2 3 29 29 H 1.08999 * 109.47166 * 240.00394 * 2 1 3 30 30 H 1.08994 * 109.47478 * 120.00144 * 2 1 3 31 31 H 1.07999 * 119.92653 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07135 * 179.97438 * 5 4 3 33 33 H 0.96999 * 120.00014 * 354.58665 * 9 7 6 34 34 H 1.07990 * 119.78897 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.83769 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.04988 * 179.97438 * 13 12 11 37 37 H 0.96991 * 119.99653 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.16216 * 0.02562 * 23 10 9 39 39 H 1.08007 * 120.07609 * 179.74391 * 24 6 5 40 40 H 1.07997 * 119.93406 * 180.22798 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2618 2.0702 1.2001 5 6 2.7210 3.3711 1.2072 6 6 2.9546 4.0320 0.0001 7 6 3.4461 5.4261 0.0002 8 8 3.6430 6.0011 1.0530 9 7 3.6701 6.0616 -1.1670 10 6 4.0259 7.4142 -1.1697 11 6 4.8943 7.9031 -2.1432 12 6 5.2527 9.2407 -2.1554 13 6 4.7536 10.1028 -1.2049 14 6 3.8753 9.6233 -0.2152 15 6 3.3583 10.5030 0.7639 16 1 2.3966 10.3050 1.2139 17 6 4.0926 11.6299 1.1498 18 7 5.3390 11.7589 0.7732 19 14 3.2936 12.9499 2.2027 20 1 3.6030 12.6969 3.6329 21 1 3.8201 14.2818 1.8105 22 1 1.8226 12.9202 2.0017 23 6 3.5107 8.2653 -0.2095 24 6 2.7164 3.3728 -1.2070 25 6 2.2617 2.0704 -1.2000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0811 1.5575 2.1333 32 1 2.8994 3.8768 2.1447 33 1 3.5847 5.5810 -2.0052 34 1 5.2899 7.2348 -2.8936 35 1 5.9263 9.6096 -2.9147 36 1 5.0364 11.1450 -1.2183 37 1 5.8481 12.5399 1.0410 38 1 2.8343 7.8882 0.5433 39 1 2.8912 3.8800 -2.1444 40 1 2.0805 1.5578 -2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313436384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:09 Heat of formation + Delta-G solvation = -1.380881 kcal Electronic energy + Delta-G solvation = -21940.890261 eV Core-core repulsion = 18684.527289 eV Total energy + Delta-G solvation = -3256.362972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23337 -38.81314 -37.06943 -34.49489 -34.28626 -33.00875 -31.06835 -30.00025 -29.79061 -27.89780 -25.29314 -24.70070 -22.79030 -22.24648 -21.04867 -20.76589 -19.58842 -18.05585 -17.27509 -15.92102 -15.68224 -15.37101 -14.95166 -14.79404 -14.68764 -14.43060 -13.95959 -13.83249 -13.51416 -13.37005 -13.04812 -12.83166 -12.59187 -12.16991 -11.95743 -11.64528 -11.51898 -11.32471 -11.24165 -11.07122 -11.02321 -10.63668 -10.48187 -10.12194 -9.72892 -9.49269 -9.15349 -9.10447 -8.86357 -8.82471 -7.39765 -6.87300 -6.63785 -4.31988 0.80520 1.26540 2.69535 2.87160 3.12053 3.17158 3.20827 3.29817 3.60673 3.95081 4.01040 4.45770 4.56275 4.70326 4.80316 4.86566 5.01953 5.06160 5.23404 5.24855 5.36349 5.57933 5.65727 5.72779 5.75980 5.87455 5.90816 6.19059 6.24517 6.32401 6.39581 6.39994 6.74686 6.79883 7.03910 7.06691 7.10452 7.29943 7.57974 7.74613 7.98811 8.11572 8.18705 8.29257 8.65236 8.74665 8.97451 9.00898 10.29677 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.003055 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.447927 B = 9163.493130 C = 9944.922685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.127 4.127 5 C -0.058 4.058 6 C -0.128 4.128 7 C 0.545 3.455 8 O -0.510 6.510 9 N -0.663 5.663 10 C 0.149 3.851 11 C -0.258 4.258 12 C -0.094 4.094 13 C -0.167 4.167 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.911 3.089 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.206 4.206 24 C -0.085 4.085 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.279 0.721 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -18.552 -3.735 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.066 4.066 4 C -0.145 4.145 5 C -0.077 4.077 6 C -0.131 4.131 7 C 0.332 3.668 8 O -0.386 6.386 9 N -0.307 5.307 10 C 0.057 3.943 11 C -0.280 4.280 12 C -0.113 4.113 13 C -0.187 4.187 14 C 0.115 3.885 15 C -0.487 4.487 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.228 4.228 24 C -0.104 4.104 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.876 -17.990 -2.932 19.151 hybrid contribution -0.148 0.357 0.023 0.387 sum -6.024 -17.633 -2.909 18.859 Atomic orbital electron populations 1.21754 0.94505 1.01754 1.02478 1.20593 0.96342 0.92487 1.03021 1.20097 0.97073 0.96168 0.93227 1.21010 1.00975 0.94722 0.97755 1.21317 0.94518 0.93831 0.98001 1.20086 1.04058 0.94542 0.94445 1.18304 0.78475 0.85747 0.84289 1.90841 1.49857 1.67008 1.30878 1.43361 1.68450 1.10662 1.08209 1.17426 0.97665 0.80671 0.98496 1.20060 1.07391 0.96467 1.04038 1.20484 0.99332 0.93055 0.98444 1.21418 1.02660 0.99677 0.94922 1.17511 0.90016 0.90190 0.90761 1.19548 1.04583 1.05504 1.19070 0.90554 1.25887 0.94292 0.98402 0.95767 1.69807 1.07571 1.27421 1.37947 0.86252 0.80534 0.79569 0.80059 1.19611 1.20132 1.18528 1.20992 1.07426 0.92787 1.01579 1.21326 0.97198 0.94742 0.97146 1.20930 1.01131 0.94673 0.97720 0.92430 0.92346 0.92386 0.90879 0.90850 0.85522 0.84490 0.76820 0.89272 0.88971 0.86021 0.91048 0.87549 0.85582 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.07 -0.63 5.14 -104.53 -0.54 -1.16 16 4 C -0.13 -1.36 9.68 -39.64 -0.38 -1.74 16 5 C -0.06 -0.79 9.60 -39.18 -0.38 -1.16 16 6 C -0.13 -1.90 5.87 -104.97 -0.62 -2.52 16 7 C 0.54 10.50 7.50 -12.34 -0.09 10.41 16 8 O -0.51 -12.12 14.06 5.31 0.07 -12.04 16 9 N -0.66 -12.40 5.28 -10.77 -0.06 -12.45 16 10 C 0.15 3.46 6.26 -83.79 -0.52 2.94 16 11 C -0.26 -5.79 9.97 -39.09 -0.39 -6.18 16 12 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 13 C -0.17 -4.45 8.66 -38.84 -0.34 -4.79 16 14 C 0.12 3.31 5.55 -106.85 -0.59 2.72 16 15 C -0.46 -12.75 9.06 -37.74 -0.34 -13.09 16 16 H 0.08 2.07 7.87 -52.48 -0.41 1.66 16 17 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 18 N -0.80 -21.50 10.81 55.55 0.60 -20.90 16 19 Si 0.91 19.49 29.57 -169.99 -5.03 14.46 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 C -0.21 -5.48 8.39 -38.68 -0.32 -5.80 16 24 C -0.09 -0.99 9.54 -39.18 -0.37 -1.36 16 25 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.94 7.65 -52.49 -0.40 1.54 16 33 H 0.40 5.74 6.87 -40.82 -0.28 5.46 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.32 6.18 -52.49 -0.32 3.00 16 37 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.11 2.91 6.44 -52.49 -0.34 2.57 16 39 H 0.13 1.21 6.42 -52.48 -0.34 0.87 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -31.90 339.72 -9.88 -41.78 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.03 Total: 9.55 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -5.56 Total: -25.52 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.54 Total: -33.35 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.90 -9.88 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.400 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds