Wall clock time and date at job start Tue Mar 31 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46606 * 2 1 4 4 C 1.38367 * 119.84868 * 90.00264 * 3 2 1 5 5 C 1.37956 * 120.14494 * 180.02562 * 4 3 2 6 6 C 1.39589 * 119.84914 * 359.97438 * 5 4 3 7 7 C 1.47817 * 120.14211 * 179.97438 * 6 5 4 8 8 O 1.21561 * 120.00044 * 359.72362 * 7 6 5 9 9 N 1.34779 * 119.99652 * 180.02562 * 7 6 5 10 10 C 1.39861 * 119.99896 * 174.58606 * 9 7 6 11 11 C 1.39311 * 119.94824 * 146.34743 * 10 9 7 12 12 C 1.38489 * 120.42382 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32275 * 359.97438 * 12 11 10 14 14 C 1.40743 * 119.89047 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20523 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99587 * 151.78949 * 15 14 13 17 17 C 1.39930 * 120.00389 * 331.79025 * 15 14 13 18 18 N 1.30836 * 119.99716 * 348.98645 * 17 15 14 19 19 Si 1.86801 * 120.00272 * 168.99369 * 17 15 14 20 20 H 1.48497 * 109.47343 * 94.98941 * 19 17 15 21 21 H 1.48501 * 109.46776 * 214.98851 * 19 17 15 22 22 H 1.48498 * 109.46794 * 334.98802 * 19 17 15 23 23 C 1.38263 * 119.94805 * 326.07694 * 10 9 7 24 24 C 1.39586 * 119.71181 * 0.25432 * 6 5 4 25 25 C 1.37953 * 119.85213 * 359.51615 * 24 6 5 26 26 H 1.08994 * 109.47478 * 59.99856 * 1 2 3 27 27 H 1.09005 * 109.46700 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47166 * 299.99606 * 1 2 3 29 29 H 1.08999 * 109.47166 * 240.00394 * 2 1 3 30 30 H 1.08994 * 109.47478 * 120.00144 * 2 1 3 31 31 H 1.07999 * 119.92653 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07135 * 179.97438 * 5 4 3 33 33 H 0.96999 * 120.00014 * 354.58665 * 9 7 6 34 34 H 1.07990 * 119.78897 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.83769 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.04988 * 179.97438 * 13 12 11 37 37 H 0.96991 * 119.99653 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.16216 * 0.02562 * 23 10 9 39 39 H 1.08007 * 120.07609 * 179.74391 * 24 6 5 40 40 H 1.07997 * 119.93406 * 180.22798 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2618 2.0702 1.2001 5 6 2.7210 3.3711 1.2072 6 6 2.9546 4.0320 0.0001 7 6 3.4461 5.4261 0.0002 8 8 3.6430 6.0011 1.0530 9 7 3.6701 6.0616 -1.1670 10 6 4.0259 7.4142 -1.1697 11 6 4.8943 7.9031 -2.1432 12 6 5.2527 9.2407 -2.1554 13 6 4.7536 10.1028 -1.2049 14 6 3.8753 9.6233 -0.2152 15 6 3.3583 10.5030 0.7639 16 1 2.3966 10.3050 1.2139 17 6 4.0926 11.6299 1.1498 18 7 5.3390 11.7589 0.7732 19 14 3.2936 12.9499 2.2027 20 1 3.6030 12.6969 3.6329 21 1 3.8201 14.2818 1.8105 22 1 1.8226 12.9202 2.0017 23 6 3.5107 8.2653 -0.2095 24 6 2.7164 3.3728 -1.2070 25 6 2.2617 2.0704 -1.2000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0811 1.5575 2.1333 32 1 2.8994 3.8768 2.1447 33 1 3.5847 5.5810 -2.0052 34 1 5.2899 7.2348 -2.8936 35 1 5.9263 9.6096 -2.9147 36 1 5.0364 11.1450 -1.2183 37 1 5.8481 12.5399 1.0410 38 1 2.8343 7.8882 0.5433 39 1 2.8912 3.8800 -2.1444 40 1 2.0805 1.5578 -2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313436384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:08 Heat of formation + Delta-G solvation = -18.924175 kcal Electronic energy + Delta-G solvation = -21941.650995 eV Core-core repulsion = 18684.527289 eV Total energy + Delta-G solvation = -3257.123706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60499 -40.02681 -38.84976 -36.29032 -35.20004 -34.73495 -32.00822 -31.77408 -31.05365 -29.48444 -27.29140 -25.67828 -23.80185 -23.43207 -22.77648 -22.17905 -21.03313 -19.71071 -18.84652 -17.48389 -17.13853 -16.50571 -16.49198 -16.20123 -16.11500 -15.96082 -15.07621 -14.90451 -14.68003 -14.52304 -14.31692 -14.22060 -13.92150 -13.67578 -13.38532 -13.13121 -12.86252 -12.72638 -12.58735 -12.23417 -12.21125 -12.07409 -11.88532 -11.68020 -11.60933 -11.29381 -10.99272 -10.69154 -9.98971 -9.76949 -9.39502 -8.75401 -8.59912 -6.40917 -0.23361 0.38514 0.90480 0.98902 1.34783 1.46294 1.50677 1.88590 2.12438 2.21459 2.71596 2.85236 3.59911 3.70514 3.79876 3.89548 3.98574 4.27436 4.39278 4.43948 4.54065 4.55519 4.58992 4.64142 4.93456 4.99203 4.99871 5.07051 5.09216 5.12813 5.12953 5.17634 5.28811 5.31916 5.39863 5.43523 5.60783 5.72915 5.82307 5.92288 6.04612 6.08681 6.31889 6.56985 6.66357 6.91520 6.97659 7.22518 8.35600 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.003055 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.447927 B = 9163.493130 C = 9944.922685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.054 4.054 4 C -0.127 4.127 5 C -0.076 4.076 6 C -0.156 4.156 7 C 0.542 3.458 8 O -0.568 6.568 9 N -0.651 5.651 10 C 0.154 3.846 11 C -0.246 4.246 12 C -0.092 4.092 13 C -0.192 4.192 14 C 0.087 3.913 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.031 3.969 18 N -0.831 5.831 19 Si 0.987 3.013 20 H -0.266 1.266 21 H -0.258 1.258 22 H -0.260 1.260 23 C -0.234 4.234 24 C -0.080 4.080 25 C -0.122 4.122 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.420 0.580 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.288 0.712 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -21.211 -5.699 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.145 4.145 5 C -0.095 4.095 6 C -0.159 4.159 7 C 0.332 3.668 8 O -0.448 6.448 9 N -0.297 5.297 10 C 0.061 3.939 11 C -0.267 4.267 12 C -0.110 4.110 13 C -0.212 4.212 14 C 0.084 3.916 15 C -0.531 4.531 16 H 0.083 0.917 17 C -0.182 4.182 18 N -0.458 5.458 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.182 1.182 22 H -0.184 1.184 23 C -0.256 4.256 24 C -0.098 4.098 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.259 0.741 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.165 0.835 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.176 -20.697 -4.949 22.159 hybrid contribution -0.063 0.926 0.554 1.080 sum -6.239 -19.772 -4.395 21.193 Atomic orbital electron populations 1.21759 0.94072 1.02685 1.01992 1.20684 0.96506 0.90508 1.04554 1.20541 0.94811 0.97449 0.92615 1.21236 1.00255 0.93425 0.99578 1.21316 0.95928 0.95272 0.97011 1.19800 1.07346 0.92308 0.96460 1.19098 0.77004 0.87331 0.83347 1.90809 1.52336 1.68781 1.32861 1.43224 1.67995 1.09008 1.09476 1.17530 0.96668 0.82323 0.97393 1.20512 1.05629 0.96616 1.03929 1.20877 0.98841 0.93312 0.98019 1.21391 1.03875 0.99756 0.96147 1.17859 0.91118 0.90987 0.91621 1.19758 1.04998 1.07683 1.20698 0.91734 1.26758 0.94623 1.00008 0.96821 1.69853 1.08625 1.28395 1.38920 0.85137 0.79386 0.76810 0.77978 1.19143 1.18186 1.18370 1.20940 1.08657 0.93222 1.02781 1.21555 0.96304 0.95532 0.96438 1.21345 0.99552 0.93772 0.99279 0.92597 0.90775 0.93260 0.88994 0.89801 0.83428 0.86649 0.74073 0.84769 0.85550 0.87386 0.90144 0.89987 0.83465 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.09 -0.82 6.06 29.85 0.18 -0.64 16 3 C -0.05 -0.86 5.14 -19.80 -0.10 -0.96 16 4 C -0.13 -2.53 9.68 22.23 0.22 -2.32 16 5 C -0.08 -2.13 9.60 22.53 0.22 -1.91 16 6 C -0.16 -4.64 5.87 -20.09 -0.12 -4.76 16 7 C 0.54 21.67 7.50 86.78 0.65 22.32 16 8 O -0.57 -29.04 14.06 -3.91 -0.05 -29.10 16 9 N -0.65 -24.20 5.28 -306.26 -1.62 -25.82 16 10 C 0.15 7.23 6.26 38.12 0.24 7.47 16 11 C -0.25 -10.57 9.97 22.59 0.23 -10.35 16 12 C -0.09 -4.27 10.02 22.20 0.22 -4.04 16 13 C -0.19 -10.56 8.66 22.75 0.20 -10.36 16 14 C 0.09 5.15 5.55 -21.31 -0.12 5.03 16 15 C -0.50 -29.87 9.06 23.46 0.21 -29.66 16 16 H 0.06 3.81 7.87 -2.91 -0.02 3.78 16 17 C 0.03 1.70 5.25 85.25 0.45 2.15 16 18 N -0.83 -46.19 10.81 21.82 0.24 -45.95 16 19 Si 0.99 41.27 29.57 68.60 2.03 43.30 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 C -0.23 -13.18 8.39 22.85 0.19 -12.99 16 24 C -0.08 -1.66 9.54 22.53 0.21 -1.44 16 25 C -0.12 -1.91 9.68 22.23 0.22 -1.69 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.12 3.62 7.65 -2.91 -0.02 3.59 16 33 H 0.42 11.25 6.87 -92.71 -0.64 10.62 16 34 H 0.13 4.56 8.06 -2.92 -0.02 4.54 16 35 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.11 6.15 6.18 -2.91 -0.02 6.13 16 37 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 38 H 0.08 4.90 6.44 -2.91 -0.02 4.89 16 39 H 0.15 2.31 6.42 -2.91 -0.02 2.29 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -75.84 339.72 4.82 -71.02 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.42 Total: 31.37 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.80 Total: -44.83 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.38 Total: -71.77 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -75.84 4.82 -71.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.096 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds