Wall clock time and date at job start Tue Mar 31 2020 07:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 C 1.50704 * 109.46926 * 240.00438 * 2 1 3 5 5 H 1.08000 * 120.00006 * 241.34390 * 4 2 1 6 6 C 1.37873 * 120.00101 * 61.34580 * 4 2 1 7 7 N 1.31518 * 120.00121 * 193.97887 * 6 4 2 8 8 Si 1.86803 * 120.00280 * 13.97533 * 6 4 2 9 9 H 1.48503 * 109.46930 * 84.54548 * 8 6 4 10 10 H 1.48497 * 109.47484 * 204.55033 * 8 6 4 11 11 H 1.48502 * 109.46744 * 324.55252 * 8 6 4 12 12 C 1.52997 * 109.47508 * 120.00399 * 2 1 3 13 13 N 1.46500 * 109.46794 * 299.99776 * 12 2 1 14 14 C 1.34779 * 119.99941 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99591 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00206 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47059 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.46882 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47179 * 179.97438 * 18 17 16 20 20 C 1.33387 * 125.20029 * 89.99714 * 19 18 17 21 21 C 1.38422 * 114.92228 * 179.97438 * 20 19 18 22 22 C 1.33388 * 114.92106 * 0.02562 * 21 20 19 23 23 S 1.75882 * 125.20497 * 269.69573 * 19 18 17 24 24 H 1.09003 * 109.47066 * 309.36547 * 1 2 3 25 25 H 1.08999 * 109.47444 * 69.36605 * 1 2 3 26 26 H 1.09001 * 109.47059 * 189.36753 * 1 2 3 27 27 H 1.09005 * 109.46948 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47492 * 300.00047 * 3 2 1 29 29 H 1.08997 * 109.47099 * 60.00444 * 3 2 1 30 30 H 0.97001 * 119.99961 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47223 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47259 * 59.99474 * 12 2 1 33 33 H 0.97004 * 120.00246 * 0.02562 * 13 12 2 34 34 H 1.09005 * 109.46585 * 60.00104 * 16 14 13 35 35 H 1.08997 * 109.46691 * 300.00079 * 16 14 13 36 36 H 1.08996 * 109.47283 * 59.99706 * 17 16 14 37 37 H 1.09005 * 109.47224 * 299.99880 * 17 16 14 38 38 H 1.09005 * 109.47413 * 60.00011 * 18 17 16 39 39 H 1.08997 * 109.47689 * 299.99804 * 18 17 16 40 40 H 1.08004 * 122.54512 * 359.96513 * 20 19 18 41 41 H 1.08001 * 122.54160 * 180.02562 * 21 20 19 42 42 H 1.08001 * 125.20680 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6351 -1.6009 -1.1317 6 6 1.7222 -0.2232 -2.4826 7 7 1.9156 -0.9724 -3.5461 8 14 1.0274 1.5008 -2.6684 9 1 2.1415 2.4818 -2.7083 10 1 0.2467 1.5867 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0307 2.4453 14 6 1.8770 -0.4915 3.6694 15 8 2.5743 -1.4776 3.7806 16 6 1.3743 0.2185 4.9000 17 6 1.8844 -0.5027 6.1491 18 6 1.3735 0.2178 7.3984 19 6 1.8755 -0.4930 8.6288 20 6 3.0213 -0.2260 9.2573 21 6 3.2731 -1.0106 10.3695 22 6 2.3320 -1.9152 10.6440 23 16 1.0366 -1.7963 9.4601 24 1 -0.3633 0.6518 0.7945 25 1 -0.3634 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6978 -0.6295 -4.4270 31 1 3.1300 -0.7209 1.2493 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7578 2.3564 34 1 0.2842 0.2184 4.8996 35 1 1.7376 1.2462 4.9003 36 1 2.9744 -0.5023 6.1492 37 1 1.5215 -1.5306 6.1490 38 1 0.2835 0.2170 7.3981 39 1 1.7360 1.2457 7.3989 40 1 3.7013 0.5440 8.9237 41 1 4.1641 -0.8989 10.9697 42 1 2.3588 -2.6107 11.4698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315331751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:27 Heat of formation + Delta-G solvation = -31.718768 kcal Electronic energy + Delta-G solvation = -20812.450278 eV Core-core repulsion = 17690.215708 eV Total energy + Delta-G solvation = -3122.234570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81349 -38.90207 -38.40751 -35.63907 -34.95819 -33.43495 -31.39973 -28.34601 -27.99110 -27.20197 -26.57844 -24.39170 -22.64449 -21.23340 -20.87747 -20.11177 -18.50011 -18.04792 -17.65296 -16.94412 -16.81172 -16.58510 -16.28446 -15.58803 -15.01055 -14.88846 -14.61330 -14.46461 -14.29512 -13.99047 -13.74951 -13.72625 -13.55226 -13.33672 -12.90787 -12.71299 -12.42943 -12.39227 -12.31685 -12.12048 -11.94681 -11.75580 -11.72350 -11.47699 -11.09300 -10.80024 -10.61460 -10.37552 -9.95097 -9.51424 -9.37572 -8.30317 -6.32326 0.11927 0.76596 1.13540 1.36786 1.38298 1.51719 1.77087 1.87460 2.35055 2.39916 3.05811 3.77194 3.86591 4.08288 4.10301 4.25055 4.31139 4.33302 4.42717 4.49390 4.62631 4.73105 4.75805 4.77446 4.80848 4.85231 4.88492 4.93598 4.97178 5.07319 5.13735 5.19878 5.31462 5.39310 5.43749 5.46688 5.58105 5.64899 5.73568 5.80966 6.30379 6.69960 6.74946 7.32492 7.41026 8.87075 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044527 B = 0.002385 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.678272 B =11738.721727 C =11854.960467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.519 4.519 5 H 0.023 0.977 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.200 1.200 12 C 0.157 3.843 13 N -0.713 5.713 14 C 0.499 3.501 15 O -0.599 6.599 16 C -0.128 4.128 17 C -0.093 4.093 18 C -0.043 4.043 19 C -0.178 4.178 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.224 4.224 23 S 0.069 5.931 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.264 0.736 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 8.466 28.434 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 C -0.203 4.203 4 C -0.558 4.558 5 H 0.042 0.958 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.124 1.124 12 C 0.032 3.968 13 N -0.365 5.365 14 C 0.287 3.713 15 O -0.481 6.481 16 C -0.168 4.168 17 C -0.132 4.132 18 C -0.082 4.082 19 C -0.296 4.296 20 C -0.184 4.184 21 C -0.173 4.173 22 C -0.359 4.359 23 S 0.332 5.668 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.251 0.749 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.169 0.831 41 H 0.174 0.826 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.443 6.972 28.135 29.493 hybrid contribution 1.449 0.766 -0.857 1.850 sum -3.994 7.738 27.278 28.634 Atomic orbital electron populations 1.22216 0.95924 1.00615 1.01040 1.18660 0.93885 0.93205 0.91689 1.22290 1.00899 0.96661 1.00482 1.21061 1.32899 1.11026 0.90780 0.95814 1.25927 0.95435 1.01881 0.95167 1.70127 1.50777 1.38394 0.99429 0.86294 0.79431 0.79577 0.77050 1.20880 1.24580 1.12369 1.20968 0.97091 0.94878 0.83832 1.46105 1.53151 1.32142 1.05107 1.21610 0.79494 0.84237 0.85935 1.90684 1.40611 1.29106 1.87657 1.21722 1.04189 1.01414 0.89455 1.21241 1.00810 0.98848 0.92286 1.20212 1.01532 0.99023 0.87472 1.24774 0.99734 1.02152 1.02897 1.20440 0.97756 1.03186 0.97037 1.20478 1.01279 0.96672 0.98869 1.25890 0.98565 1.06309 1.05124 1.84391 1.24427 1.34850 1.23130 0.91101 0.93647 0.94295 0.93670 0.94685 0.90305 0.92693 0.94407 0.94688 0.74856 0.85965 0.85553 0.92713 0.93400 0.89278 0.87626 0.83058 0.82574 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 7.53 71.98 0.54 -4.65 16 2 C 0.03 1.12 0.50 -52.93 -0.03 1.09 16 3 C -0.15 -5.31 7.52 71.98 0.54 -4.77 16 4 C -0.52 -28.83 8.62 25.60 0.22 -28.61 16 5 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 6 C 0.01 0.74 5.32 84.65 0.45 1.19 16 7 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 8 Si 0.95 42.35 22.79 68.60 1.56 43.91 16 9 H -0.28 -12.32 7.10 99.48 0.71 -11.61 16 10 H -0.32 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.20 -7.40 4.65 99.48 0.46 -6.94 16 12 C 0.16 6.24 4.49 86.38 0.39 6.63 16 13 N -0.71 -20.55 5.00 -463.06 -2.32 -22.86 16 14 C 0.50 14.44 7.83 87.66 0.69 15.13 16 15 O -0.60 -23.88 15.98 -3.05 -0.05 -23.93 16 16 C -0.13 -2.11 5.70 29.85 0.17 -1.94 16 17 C -0.09 -1.78 4.49 30.59 0.14 -1.64 16 18 C -0.04 -0.58 5.71 29.85 0.17 -0.41 16 19 C -0.18 -3.04 5.76 24.59 0.14 -2.90 16 20 C -0.15 -2.52 10.05 21.22 0.21 -2.30 16 21 C -0.14 -2.17 10.18 21.22 0.22 -1.96 16 22 C -0.22 -3.43 11.23 66.72 0.75 -2.68 16 23 S 0.07 1.20 23.33 -56.49 -1.32 -0.12 16 24 H 0.07 1.93 7.13 -2.39 -0.02 1.92 16 25 H 0.04 1.78 4.30 -2.39 -0.01 1.77 16 26 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.03 1.32 2.25 -2.39 -0.01 1.32 16 29 H 0.08 2.09 6.86 -2.39 -0.02 2.07 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 8.88 6.26 -92.70 -0.58 8.30 16 34 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.84 343.43 2.97 -71.88 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.19 Total: 17.83 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.60 Total: -27.82 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.02 Total: -81.74 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.56 Total: 43.91 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.32 Total: -0.12 kcal Total: -74.84 2.97 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315331751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds