Wall clock time and date at job start Tue Mar 31 2020 07:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35970 * 116.99663 * 2 1 4 4 C 1.38309 * 119.99318 * 359.71708 * 3 2 1 5 5 C 1.39609 * 119.82063 * 179.73233 * 4 3 2 6 6 C 1.47732 * 120.09903 * 180.25139 * 5 4 3 7 7 O 1.21571 * 120.00143 * 0.31863 * 6 5 4 8 8 N 1.34781 * 120.00153 * 180.31441 * 6 5 4 9 9 C 1.46494 * 119.99953 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46947 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47064 * 299.99788 * 10 9 8 12 12 C 1.52997 * 109.47489 * 59.99773 * 10 9 8 13 13 C 1.50697 * 109.47176 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99999 * 1.34257 * 13 10 9 15 15 C 1.37879 * 120.00266 * 181.34701 * 13 10 9 16 16 N 1.31512 * 120.00192 * 193.97905 * 15 13 10 17 17 Si 1.86802 * 119.99788 * 13.97323 * 15 13 10 18 18 H 1.48492 * 109.46988 * 84.55350 * 17 15 13 19 19 H 1.48500 * 109.47093 * 204.55259 * 17 15 13 20 20 H 1.48493 * 109.47181 * 324.54857 * 17 15 13 21 21 C 1.39651 * 119.80238 * 0.56448 * 5 4 3 22 22 C 1.37884 * 119.98060 * 359.71289 * 21 5 4 23 23 C 1.38524 * 120.18581 * 359.97438 * 22 21 5 24 24 F 1.35099 * 119.90768 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46644 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47092 * 60.01033 * 1 2 3 27 27 H 1.08992 * 109.47776 * 300.00535 * 1 2 3 28 28 H 1.08003 * 120.08895 * 0.02562 * 4 3 2 29 29 H 0.97004 * 119.99882 * 359.97438 * 8 6 5 30 30 H 1.08993 * 109.47528 * 299.99966 * 9 8 6 31 31 H 1.08996 * 109.47370 * 60.00804 * 9 8 6 32 32 H 1.09001 * 109.47274 * 69.37016 * 11 10 9 33 33 H 1.08999 * 109.47095 * 189.37109 * 11 10 9 34 34 H 1.08997 * 109.47326 * 309.37134 * 11 10 9 35 35 H 1.09005 * 109.46802 * 60.00046 * 12 10 9 36 36 H 1.08995 * 109.47573 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47416 * 300.00402 * 12 10 9 38 38 H 0.97004 * 120.00370 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.00759 * 179.68268 * 21 5 4 40 40 H 1.08001 * 119.91018 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2927 2.3714 -0.0059 5 6 1.9301 3.6134 -0.0002 6 6 1.1313 4.8561 -0.0009 7 8 -0.0830 4.7982 -0.0005 8 7 1.7488 6.0542 -0.0018 9 6 0.9566 7.2865 -0.0030 10 6 1.8943 8.4955 -0.0045 11 6 2.7770 8.4579 1.2446 12 6 2.7766 8.4551 -1.2538 13 6 1.0794 9.7632 -0.0052 14 1 0.0008 9.7118 0.0174 15 6 1.7108 10.9886 -0.0346 16 7 1.0352 12.0831 0.2395 17 14 3.5258 11.0940 -0.4636 18 1 3.6844 11.1258 -1.9397 19 1 4.1021 12.3306 0.1229 20 1 4.2337 9.9096 0.0850 21 6 3.3252 3.6776 -0.0006 22 6 4.0684 2.5162 -0.0005 23 6 3.4352 1.2841 0.0004 24 9 4.1689 0.1497 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8898 28 1 0.2141 2.3163 -0.0101 29 1 2.7177 6.1004 -0.0017 30 1 0.3281 7.3135 -0.8931 31 1 0.3279 7.3151 0.8868 32 1 3.4832 7.6313 1.1658 33 1 3.3243 9.3965 1.3311 34 1 2.1522 8.3190 2.1269 35 1 2.1477 8.4820 -2.1438 36 1 3.4443 9.3167 -1.2551 37 1 3.3660 7.5382 -1.2530 38 1 1.4793 12.9453 0.2185 39 1 3.8217 4.6367 -0.0013 40 1 5.1472 2.5672 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315332665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:20 Heat of formation + Delta-G solvation = -78.081159 kcal Electronic energy + Delta-G solvation = -23565.057739 eV Core-core repulsion = 19874.599569 eV Total energy + Delta-G solvation = -3690.458170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.08968 -40.58267 -39.37143 -37.47983 -36.70649 -33.51628 -31.69686 -31.08457 -30.49927 -27.81280 -26.47213 -26.09543 -25.01780 -23.55728 -22.75825 -20.59610 -19.43858 -18.67457 -17.60514 -17.08256 -16.63646 -16.47217 -16.16650 -15.47395 -15.34579 -15.04644 -14.96253 -14.84541 -14.56043 -13.86599 -13.38402 -13.17111 -13.07673 -12.97559 -12.67474 -12.51193 -12.27102 -12.10247 -12.01281 -11.55403 -11.51714 -11.31455 -10.50472 -10.39302 -10.23012 -10.12761 -9.81267 -9.28525 -9.18540 -8.74418 -8.72277 -8.53676 -8.48316 -6.19163 -4.16988 0.43623 0.89555 2.70172 2.77624 3.20099 3.26907 3.35344 3.37807 3.60175 3.85999 4.31171 4.35038 4.60427 4.69624 4.76042 4.87914 4.90699 5.11301 5.14152 5.21391 5.49104 5.59571 5.69890 5.78697 5.93133 5.97689 5.98565 6.19923 6.28476 6.40610 6.44616 6.55662 6.62591 6.65838 6.87924 6.88684 7.14612 7.36276 7.66233 7.76082 8.35703 8.42879 8.85924 9.44341 10.93859 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029657 B = 0.003388 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.894706 B = 8261.511507 C = 8991.904069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.087 3.913 4 C -0.126 4.126 5 C -0.096 4.096 6 C 0.549 3.451 7 O -0.541 6.541 8 N -0.712 5.712 9 C 0.141 3.859 10 C 0.028 3.972 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.515 4.515 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.305 1.305 20 H -0.249 1.249 21 C -0.096 4.096 22 C -0.121 4.121 23 C 0.087 3.913 24 F -0.130 7.130 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.397 0.603 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.140 0.860 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -21.051 -0.503 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.041 3.959 4 C -0.146 4.146 5 C -0.100 4.100 6 C 0.335 3.665 7 O -0.420 6.420 8 N -0.363 5.363 9 C 0.019 3.981 10 C 0.027 3.973 11 C -0.200 4.200 12 C -0.206 4.206 13 C -0.553 4.553 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.213 1.213 19 H -0.234 1.234 20 H -0.175 1.175 21 C -0.115 4.115 22 C -0.140 4.140 23 C 0.067 3.933 24 F -0.108 7.108 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.170 0.830 29 H 0.233 0.767 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.761 -21.077 -0.477 21.613 hybrid contribution 1.360 0.248 -0.318 1.418 sum 6.120 -20.829 -0.795 21.724 Atomic orbital electron populations 1.23185 0.77441 1.04393 1.02145 1.86132 1.22114 1.25267 1.88789 1.18856 0.90713 0.85717 1.00587 1.21255 1.01355 0.89890 1.02057 1.19986 0.93571 0.93795 1.02610 1.18077 0.87472 0.83423 0.77546 1.90768 1.13511 1.87347 1.50347 1.46258 1.10854 1.06157 1.73038 1.21597 0.93820 0.80864 1.01863 1.18730 0.92984 0.94057 0.91530 1.22311 0.98611 0.99796 0.99320 1.22374 0.99341 0.98483 1.00360 1.20700 0.94546 0.87711 1.52303 0.90489 1.24973 0.97948 0.95614 0.94156 1.69946 1.37274 0.98548 1.46874 0.87296 0.86525 0.76098 0.78306 1.21310 1.23351 1.17507 1.21152 0.92500 0.98642 0.99183 1.20938 1.01338 0.89766 1.01953 1.17174 0.85957 0.83003 1.07139 1.91511 1.76559 1.48790 1.93968 0.87771 0.92044 0.92038 0.82992 0.76708 0.91628 0.91519 0.96005 0.92409 0.93297 0.92679 0.93924 0.95242 0.92497 0.84206 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.42 10.36 -19.65 -0.20 -3.62 16 3 C 0.09 1.02 6.69 -39.24 -0.26 0.75 16 4 C -0.13 -1.51 8.58 -39.04 -0.33 -1.84 16 5 C -0.10 -1.22 5.87 -104.98 -0.62 -1.84 16 6 C 0.55 8.70 7.77 -12.38 -0.10 8.61 16 7 O -0.54 -10.38 16.34 5.30 0.09 -10.30 16 8 N -0.71 -11.11 4.95 -61.29 -0.30 -11.42 16 9 C 0.14 2.69 4.49 -4.04 -0.02 2.67 16 10 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 11 C -0.14 -2.78 7.53 37.16 0.28 -2.50 16 12 C -0.15 -2.88 7.52 37.16 0.28 -2.60 16 13 C -0.51 -13.47 8.62 -34.44 -0.30 -13.76 16 14 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 15 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 16 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 17 Si 0.89 20.54 22.79 -169.99 -3.87 16.67 16 18 H -0.29 -6.61 7.10 56.52 0.40 -6.21 16 19 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.25 -5.19 4.65 56.52 0.26 -4.93 16 21 C -0.10 -0.98 9.53 -39.18 -0.37 -1.35 16 22 C -0.12 -1.14 10.00 -39.61 -0.40 -1.54 16 23 C 0.09 0.98 7.31 -39.16 -0.29 0.70 16 24 F -0.13 -1.54 17.10 2.25 0.04 -1.50 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 27 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 28 H 0.15 1.76 5.88 -52.48 -0.31 1.45 16 29 H 0.40 5.25 4.28 -40.82 -0.17 5.07 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 33 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 34 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 37 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.14 1.16 6.39 -52.49 -0.34 0.82 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -31.22 321.37 -4.85 -36.07 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.91 Total: 3.71 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.30 Total: -9.05 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.47 Total: -36.81 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.12 Total: -13.92 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -3.87 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.22 -4.85 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315332665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.012 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds