Wall clock time and date at job start Tue Mar 31 2020 07:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35970 * 116.99663 * 2 1 4 4 C 1.38309 * 119.99318 * 359.71708 * 3 2 1 5 5 C 1.39609 * 119.82063 * 179.73233 * 4 3 2 6 6 C 1.47732 * 120.09903 * 180.25139 * 5 4 3 7 7 O 1.21571 * 120.00143 * 0.31863 * 6 5 4 8 8 N 1.34781 * 120.00153 * 180.31441 * 6 5 4 9 9 C 1.46494 * 119.99953 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46947 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47064 * 299.99788 * 10 9 8 12 12 C 1.52997 * 109.47489 * 59.99773 * 10 9 8 13 13 C 1.50697 * 109.47176 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99999 * 1.34257 * 13 10 9 15 15 C 1.37879 * 120.00266 * 181.34701 * 13 10 9 16 16 N 1.31512 * 120.00192 * 193.97905 * 15 13 10 17 17 Si 1.86802 * 119.99788 * 13.97323 * 15 13 10 18 18 H 1.48492 * 109.46988 * 84.55350 * 17 15 13 19 19 H 1.48500 * 109.47093 * 204.55259 * 17 15 13 20 20 H 1.48493 * 109.47181 * 324.54857 * 17 15 13 21 21 C 1.39651 * 119.80238 * 0.56448 * 5 4 3 22 22 C 1.37884 * 119.98060 * 359.71289 * 21 5 4 23 23 C 1.38524 * 120.18581 * 359.97438 * 22 21 5 24 24 F 1.35099 * 119.90768 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46644 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47092 * 60.01033 * 1 2 3 27 27 H 1.08992 * 109.47776 * 300.00535 * 1 2 3 28 28 H 1.08003 * 120.08895 * 0.02562 * 4 3 2 29 29 H 0.97004 * 119.99882 * 359.97438 * 8 6 5 30 30 H 1.08993 * 109.47528 * 299.99966 * 9 8 6 31 31 H 1.08996 * 109.47370 * 60.00804 * 9 8 6 32 32 H 1.09001 * 109.47274 * 69.37016 * 11 10 9 33 33 H 1.08999 * 109.47095 * 189.37109 * 11 10 9 34 34 H 1.08997 * 109.47326 * 309.37134 * 11 10 9 35 35 H 1.09005 * 109.46802 * 60.00046 * 12 10 9 36 36 H 1.08995 * 109.47573 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47416 * 300.00402 * 12 10 9 38 38 H 0.97004 * 120.00370 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.00759 * 179.68268 * 21 5 4 40 40 H 1.08001 * 119.91018 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2927 2.3714 -0.0059 5 6 1.9301 3.6134 -0.0002 6 6 1.1313 4.8561 -0.0009 7 8 -0.0830 4.7982 -0.0005 8 7 1.7488 6.0542 -0.0018 9 6 0.9566 7.2865 -0.0030 10 6 1.8943 8.4955 -0.0045 11 6 2.7770 8.4579 1.2446 12 6 2.7766 8.4551 -1.2538 13 6 1.0794 9.7632 -0.0052 14 1 0.0008 9.7118 0.0174 15 6 1.7108 10.9886 -0.0346 16 7 1.0352 12.0831 0.2395 17 14 3.5258 11.0940 -0.4636 18 1 3.6844 11.1258 -1.9397 19 1 4.1021 12.3306 0.1229 20 1 4.2337 9.9096 0.0850 21 6 3.3252 3.6776 -0.0006 22 6 4.0684 2.5162 -0.0005 23 6 3.4352 1.2841 0.0004 24 9 4.1689 0.1497 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8898 28 1 0.2141 2.3163 -0.0101 29 1 2.7177 6.1004 -0.0017 30 1 0.3281 7.3135 -0.8931 31 1 0.3279 7.3151 0.8868 32 1 3.4832 7.6313 1.1658 33 1 3.3243 9.3965 1.3311 34 1 2.1522 8.3190 2.1269 35 1 2.1477 8.4820 -2.1438 36 1 3.4443 9.3167 -1.2551 37 1 3.3660 7.5382 -1.2530 38 1 1.4793 12.9453 0.2185 39 1 3.8217 4.6367 -0.0013 40 1 5.1472 2.5672 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315332665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:20 Heat of formation + Delta-G solvation = -99.910433 kcal Electronic energy + Delta-G solvation = -23566.004328 eV Core-core repulsion = 19874.599569 eV Total energy + Delta-G solvation = -3691.404759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95339 -41.56599 -40.47146 -38.60486 -38.05837 -35.09679 -33.52563 -32.01621 -31.37342 -28.60287 -27.99629 -27.47640 -26.91242 -24.65364 -23.54814 -21.78044 -21.00756 -19.78509 -18.57703 -18.03362 -17.96990 -17.65414 -17.27360 -17.03181 -16.50863 -16.35802 -16.12921 -15.66120 -15.30110 -15.21514 -14.96789 -14.69593 -14.36938 -14.08871 -13.93577 -13.86711 -13.73100 -13.38266 -12.92357 -12.68947 -12.39471 -12.35207 -12.18274 -12.14951 -11.93513 -11.74578 -11.19253 -10.99740 -10.60520 -10.37398 -10.20984 -9.99512 -9.39079 -8.28611 -6.30732 -0.48170 0.10754 1.38752 1.40385 1.53645 1.65699 2.03701 2.16452 2.36908 2.60267 3.02586 3.07828 3.57340 3.61591 3.87209 3.95797 4.08201 4.29743 4.31134 4.33728 4.42317 4.43658 4.63489 4.70305 4.75336 4.80406 4.84296 4.88576 4.95191 4.98437 5.08305 5.09867 5.17662 5.39007 5.46413 5.53960 5.73079 5.81850 6.11179 6.30893 6.54349 6.74203 7.16874 7.34417 8.88608 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029657 B = 0.003388 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.894706 B = 8261.511507 C = 8991.904069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.080 3.920 4 C -0.132 4.132 5 C -0.111 4.111 6 C 0.551 3.449 7 O -0.583 6.583 8 N -0.700 5.700 9 C 0.156 3.844 10 C 0.027 3.973 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.519 4.519 14 H 0.027 0.973 15 C 0.015 3.985 16 N -0.948 5.948 17 Si 0.944 3.056 18 H -0.282 1.282 19 H -0.317 1.317 20 H -0.198 1.198 21 C -0.084 4.084 22 C -0.106 4.106 23 C 0.079 3.921 24 F -0.135 7.135 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.147 0.853 29 H 0.413 0.587 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.264 0.736 39 H 0.168 0.832 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -23.326 -0.775 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.034 3.966 4 C -0.152 4.152 5 C -0.114 4.114 6 C 0.339 3.661 7 O -0.464 6.464 8 N -0.352 5.352 9 C 0.032 3.968 10 C 0.026 3.974 11 C -0.200 4.200 12 C -0.206 4.206 13 C -0.557 4.557 14 H 0.045 0.955 15 C -0.182 4.182 16 N -0.587 5.587 17 Si 0.773 3.227 18 H -0.209 1.209 19 H -0.247 1.247 20 H -0.122 1.122 21 C -0.102 4.102 22 C -0.124 4.124 23 C 0.059 3.941 24 F -0.113 7.113 25 H 0.146 0.854 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.252 0.748 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.186 0.814 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.509 -23.405 -0.749 24.915 hybrid contribution 0.041 0.859 -0.216 0.886 sum 8.550 -22.546 -0.965 24.132 Atomic orbital electron populations 1.23422 0.75890 1.06091 1.02357 1.86116 1.23792 1.25202 1.88764 1.18960 0.91169 0.85706 1.00803 1.21220 1.01331 0.90103 1.02506 1.19741 0.94550 0.92023 1.05122 1.18533 0.87177 0.84221 0.76130 1.90753 1.15637 1.87944 1.52106 1.45938 1.11280 1.04847 1.73109 1.21115 0.93522 0.82146 1.00027 1.18662 0.93226 0.91724 0.93761 1.22243 0.98950 1.01070 0.97767 1.22318 0.99147 1.00559 0.98580 1.21044 0.93069 0.90580 1.51052 0.95481 1.25889 1.03324 0.94960 0.94016 1.70118 1.39785 0.99338 1.49464 0.86344 0.80800 0.77347 0.78159 1.20938 1.24720 1.12186 1.21404 0.91097 1.00193 0.97554 1.21270 1.02921 0.88380 0.99869 1.17509 0.85882 0.83618 1.07120 1.91501 1.76556 1.49281 1.94002 0.85385 0.91831 0.91854 0.83527 0.74795 0.93532 0.93732 0.91141 0.93561 0.94055 0.93470 0.94596 0.90386 0.92709 0.81439 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -6.79 10.36 -93.21 -0.97 -7.75 16 3 C 0.08 1.72 6.69 22.49 0.15 1.87 16 4 C -0.13 -3.00 8.58 22.62 0.19 -2.81 16 5 C -0.11 -2.54 5.87 -20.10 -0.12 -2.66 16 6 C 0.55 16.65 7.77 86.75 0.67 17.33 16 7 O -0.58 -22.57 16.34 -3.94 -0.06 -22.63 16 8 N -0.70 -19.93 4.95 -466.09 -2.31 -22.24 16 9 C 0.16 5.90 4.49 86.38 0.39 6.28 16 10 C 0.03 1.10 0.50 -52.93 -0.03 1.08 16 11 C -0.14 -5.06 7.53 71.98 0.54 -4.51 16 12 C -0.15 -5.20 7.52 71.98 0.54 -4.66 16 13 C -0.52 -27.95 8.62 25.60 0.22 -27.73 16 14 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 15 C 0.02 0.85 5.32 84.66 0.45 1.31 16 16 N -0.95 -58.13 13.96 21.45 0.30 -57.84 16 17 Si 0.94 41.29 22.79 68.60 1.56 42.85 16 18 H -0.28 -12.11 7.10 99.48 0.71 -11.41 16 19 H -0.32 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.20 -7.10 4.65 99.48 0.46 -6.63 16 21 C -0.08 -1.32 9.53 22.53 0.21 -1.10 16 22 C -0.11 -1.50 10.00 22.25 0.22 -1.28 16 23 C 0.08 1.54 7.31 22.54 0.16 1.71 16 24 F -0.13 -2.86 17.10 44.97 0.77 -2.09 16 25 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 27 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 28 H 0.15 3.40 5.88 -2.91 -0.02 3.38 16 29 H 0.41 8.77 4.28 -92.71 -0.40 8.37 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.81 7.13 -2.39 -0.02 1.79 16 33 H 0.05 1.75 4.30 -2.39 -0.01 1.74 16 34 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.04 1.31 2.25 -2.39 -0.01 1.31 16 37 H 0.08 1.96 6.86 -2.39 -0.02 1.94 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.17 1.66 6.39 -2.91 -0.02 1.64 16 40 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -72.51 321.37 4.47 -68.04 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.44 Total: 15.49 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.73 Total: -13.84 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.01 Total: -80.07 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.03 Total: -30.39 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.77 Total: -2.09 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.56 Total: 42.85 kcal Total: -72.51 4.47 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315332665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.871 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds