Wall clock time and date at job start Tue Mar 31 2020 07:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47534 * 299.99625 * 11 10 9 13 13 C 1.52997 * 109.47208 * 60.00096 * 11 10 9 14 14 C 1.50703 * 109.47056 * 179.97438 * 11 10 9 15 15 H 1.08006 * 120.00042 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00357 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99643 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00337 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46904 * 60.00347 * 18 16 14 20 20 H 1.48501 * 109.47115 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47115 * 300.00251 * 18 16 14 22 22 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 23 23 C 1.37891 * 119.88633 * 0.02562 * 22 6 5 24 24 F 1.35099 * 119.98055 * 180.02562 * 23 22 6 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 28 28 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 29 29 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 30 30 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 32 32 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 33 33 H 1.08994 * 109.46845 * 59.99617 * 12 11 10 34 34 H 1.08998 * 109.47218 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46679 * 300.00194 * 12 11 10 36 36 H 1.09006 * 109.47668 * 59.99366 * 13 11 10 37 37 H 1.09004 * 109.47262 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47203 * 299.99840 * 13 11 10 39 39 H 0.97006 * 119.99934 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.05353 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 1.9712 8.4043 -1.2874 13 6 1.9703 8.4184 1.2110 14 6 3.5273 9.8829 -0.0453 15 1 4.6058 9.9407 -0.0453 16 6 2.7750 11.0383 -0.0525 17 7 1.4617 10.9679 -0.0530 18 14 3.6211 12.7038 -0.0616 19 1 4.4701 12.8210 -1.2743 20 1 2.5970 13.7792 -0.0692 21 1 4.4686 12.8350 1.1506 22 6 4.0640 2.5078 -0.0062 23 6 3.4352 1.2806 -0.0005 24 9 4.1689 0.1462 0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2087 2.3146 -0.0062 29 1 1.3171 4.5071 -0.0156 30 1 2.2677 6.0734 -0.0252 31 1 4.5224 7.5274 0.8575 32 1 4.5226 7.5177 -0.9223 33 1 1.4776 7.4326 -1.2821 34 1 1.2198 9.1940 -1.2923 35 1 2.5942 8.4906 -2.1776 36 1 2.5926 8.5145 2.1008 37 1 1.2189 9.2080 1.2066 38 1 1.4766 7.4466 1.2164 39 1 0.9324 11.7808 -0.0585 40 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315352468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:13 Heat of formation + Delta-G solvation = -97.948754 kcal Electronic energy + Delta-G solvation = -23401.213999 eV Core-core repulsion = 19709.894305 eV Total energy + Delta-G solvation = -3691.319694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.94088 -40.49202 -39.37866 -37.31278 -36.31455 -33.44388 -31.30422 -30.94777 -30.27368 -27.86705 -25.77659 -25.71399 -25.05921 -23.36943 -22.79059 -20.39924 -19.05597 -18.63058 -17.79509 -17.13119 -16.46507 -16.17437 -15.85747 -15.31284 -15.10484 -15.02485 -14.77555 -14.68490 -14.51492 -13.59813 -13.19741 -13.00373 -12.96363 -12.76666 -12.47748 -12.24390 -12.15085 -11.50555 -11.44911 -11.32824 -11.21959 -10.87575 -10.75808 -10.43062 -10.24000 -9.74234 -9.68279 -9.33094 -9.24603 -8.84193 -8.62736 -8.43835 -8.31237 -6.05352 -4.15473 0.62042 0.87925 2.74840 2.81093 3.28530 3.32825 3.35973 3.53151 3.73009 3.97615 4.36173 4.37641 4.61888 4.77026 4.79748 4.84222 4.91803 5.09744 5.21604 5.26259 5.55932 5.68698 5.83846 5.99882 6.19606 6.28103 6.29021 6.45892 6.72008 6.76151 6.87485 6.89720 6.94365 6.97224 7.30462 7.50867 7.65893 7.95378 7.96632 8.10142 8.34249 8.58007 8.84883 9.50552 10.96086 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.003098 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.953733 B = 9036.963423 C = 9727.552594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.114 3.886 4 C -0.189 4.189 5 C -0.054 4.054 6 C -0.135 4.135 7 C 0.550 3.450 8 O -0.546 6.546 9 N -0.709 5.709 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.059 4.059 23 C 0.060 3.940 24 F -0.130 7.130 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.397 0.603 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.261 0.739 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -18.179 0.095 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.067 3.933 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.138 4.138 7 C 0.336 3.664 8 O -0.426 6.426 9 N -0.359 5.359 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.079 4.079 23 C 0.040 3.960 24 F -0.109 7.109 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.797 -18.195 0.094 18.817 hybrid contribution -0.242 0.826 -0.004 0.860 sum -5.038 -17.370 0.090 18.086 Atomic orbital electron populations 1.23179 0.77579 1.04454 1.01871 1.86103 1.22042 1.25805 1.88120 1.19227 0.90803 0.85680 0.97571 1.21072 1.00571 0.91049 1.08090 1.21260 0.93474 0.97898 0.94658 1.19874 0.93342 0.93887 1.06738 1.18001 0.87035 0.83824 0.77534 1.90763 1.13444 1.87494 1.50853 1.46238 1.10395 1.06515 1.72778 1.21789 0.96520 0.80019 1.00810 1.18361 0.91405 0.91864 0.92852 1.21839 1.00839 0.98567 0.97650 1.21841 1.00835 0.98582 0.97631 1.20946 0.92951 0.89642 1.51042 0.92418 1.24873 0.94846 0.99009 0.94720 1.69790 1.04143 1.28076 1.50478 0.86622 0.79156 0.83309 0.78715 1.20265 1.21328 1.20257 1.21102 1.01964 0.88814 0.95974 1.16755 0.85857 0.82916 1.10430 1.91512 1.76557 1.48417 1.94416 0.92110 0.87830 0.92104 0.83798 0.84292 0.76655 0.92399 0.92407 0.97612 0.89518 0.95337 0.95336 0.89523 0.97618 0.92928 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.20 10.35 -19.01 -0.20 -3.40 16 3 C 0.11 1.29 6.70 -38.98 -0.26 1.03 16 4 C -0.19 -1.82 9.01 -39.51 -0.36 -2.17 16 5 C -0.05 -0.60 9.53 -39.21 -0.37 -0.97 16 6 C -0.13 -1.87 5.87 -104.96 -0.62 -2.49 16 7 C 0.55 9.54 7.76 -12.44 -0.10 9.44 16 8 O -0.55 -11.32 16.34 5.29 0.09 -11.24 16 9 N -0.71 -12.26 4.91 -61.33 -0.30 -12.56 16 10 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 11 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 12 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 13 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 14 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 17 N -0.89 -23.11 9.35 55.43 0.52 -22.59 16 18 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.06 -0.79 9.56 -39.15 -0.37 -1.16 16 23 C 0.06 0.77 7.30 -39.36 -0.29 0.49 16 24 F -0.13 -1.77 17.10 2.25 0.04 -1.73 16 25 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.14 0.95 6.27 -52.49 -0.33 0.62 16 29 H 0.14 1.32 6.39 -52.49 -0.34 0.99 16 30 H 0.40 6.03 4.18 -40.82 -0.17 5.86 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 34 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.16 2.09 7.64 -52.49 -0.40 1.69 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.27 331.20 -6.15 -35.42 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.03 Total: 3.31 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.24 Total: -7.62 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.11 Total: -14.63 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.27 -6.15 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315352468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.524 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds