Wall clock time and date at job start Tue Mar 31 2020 07:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47534 * 299.99625 * 11 10 9 13 13 C 1.52997 * 109.47208 * 60.00096 * 11 10 9 14 14 C 1.50703 * 109.47056 * 179.97438 * 11 10 9 15 15 H 1.08006 * 120.00042 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00357 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99643 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00337 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46904 * 60.00347 * 18 16 14 20 20 H 1.48501 * 109.47115 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47115 * 300.00251 * 18 16 14 22 22 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 23 23 C 1.37891 * 119.88633 * 0.02562 * 22 6 5 24 24 F 1.35099 * 119.98055 * 180.02562 * 23 22 6 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 28 28 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 29 29 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 30 30 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 32 32 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 33 33 H 1.08994 * 109.46845 * 59.99617 * 12 11 10 34 34 H 1.08998 * 109.47218 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46679 * 300.00194 * 12 11 10 36 36 H 1.09006 * 109.47668 * 59.99366 * 13 11 10 37 37 H 1.09004 * 109.47262 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47203 * 299.99840 * 13 11 10 39 39 H 0.97006 * 119.99934 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.05353 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 1.9712 8.4043 -1.2874 13 6 1.9703 8.4184 1.2110 14 6 3.5273 9.8829 -0.0453 15 1 4.6058 9.9407 -0.0453 16 6 2.7750 11.0383 -0.0525 17 7 1.4617 10.9679 -0.0530 18 14 3.6211 12.7038 -0.0616 19 1 4.4701 12.8210 -1.2743 20 1 2.5970 13.7792 -0.0692 21 1 4.4686 12.8350 1.1506 22 6 4.0640 2.5078 -0.0062 23 6 3.4352 1.2806 -0.0005 24 9 4.1689 0.1462 0.0056 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2087 2.3146 -0.0062 29 1 1.3171 4.5071 -0.0156 30 1 2.2677 6.0734 -0.0252 31 1 4.5224 7.5274 0.8575 32 1 4.5226 7.5177 -0.9223 33 1 1.4776 7.4326 -1.2821 34 1 1.2198 9.1940 -1.2923 35 1 2.5942 8.4906 -2.1776 36 1 2.5926 8.5145 2.1008 37 1 1.2189 9.2080 1.2066 38 1 1.4766 7.4466 1.2164 39 1 0.9324 11.7808 -0.0585 40 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315352468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:12 Heat of formation + Delta-G solvation = -115.292139 kcal Electronic energy + Delta-G solvation = -23401.966065 eV Core-core repulsion = 19709.894305 eV Total energy + Delta-G solvation = -3692.071760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93237 -41.49066 -40.53579 -38.45957 -37.84615 -35.09707 -32.92950 -31.88458 -31.38655 -28.53791 -27.53569 -27.41721 -26.72399 -24.47151 -23.71166 -21.69314 -20.65446 -19.71447 -18.89047 -18.06401 -17.76633 -17.26496 -17.25136 -16.52781 -16.51147 -16.28388 -16.09115 -15.83742 -15.31086 -15.01434 -14.78312 -14.59047 -14.06812 -13.98318 -13.70855 -13.35856 -13.15401 -13.08360 -12.86528 -12.66666 -12.61734 -12.23971 -12.19657 -12.12044 -12.10471 -11.46601 -11.32189 -10.99908 -10.68945 -10.38159 -10.15362 -10.02459 -9.36255 -8.01092 -6.16302 -0.36101 -0.01531 1.45158 1.46757 1.52865 1.69251 2.04277 2.19994 2.49085 2.61254 3.08400 3.22784 3.56648 3.66423 3.82810 3.98045 4.33503 4.36987 4.42455 4.43419 4.52578 4.66812 4.74491 4.76595 4.85138 4.95281 5.02512 5.07724 5.07816 5.14574 5.21998 5.33930 5.41177 5.57325 5.69284 5.69872 6.15556 6.18397 6.23231 6.45330 6.60383 6.87287 7.22130 7.51267 8.97523 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.003098 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.953733 B = 9036.963423 C = 9727.552594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.325 6.325 3 C 0.125 3.875 4 C -0.175 4.175 5 C -0.041 4.041 6 C -0.155 4.155 7 C 0.552 3.448 8 O -0.588 6.588 9 N -0.700 5.700 10 C 0.146 3.854 11 C 0.052 3.948 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.531 4.531 15 H 0.044 0.956 16 C 0.031 3.969 17 N -0.897 5.897 18 Si 0.942 3.058 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.278 1.278 22 C -0.064 4.064 23 C 0.040 3.960 24 F -0.140 7.140 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.185 0.815 29 H 0.161 0.839 30 H 0.410 0.590 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.260 0.740 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -19.442 0.101 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.077 3.923 4 C -0.193 4.193 5 C -0.060 4.060 6 C -0.158 4.158 7 C 0.340 3.660 8 O -0.471 6.471 9 N -0.352 5.352 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.570 4.570 15 H 0.062 0.938 16 C -0.169 4.169 17 N -0.536 5.536 18 Si 0.769 3.231 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.083 4.083 23 C 0.020 3.980 24 F -0.119 7.119 25 H 0.095 0.905 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.202 0.798 29 H 0.179 0.821 30 H 0.249 0.751 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.318 -19.477 0.100 20.807 hybrid contribution 0.460 1.093 -0.006 1.185 sum -6.858 -18.385 0.095 19.623 Atomic orbital electron populations 1.23582 0.74948 1.06368 1.03402 1.86107 1.24743 1.25401 1.87534 1.19350 0.90254 0.86821 0.95879 1.21424 1.02302 0.89484 1.06122 1.21484 0.92058 0.99497 0.92935 1.19544 0.94621 0.91657 1.09992 1.18484 0.86563 0.84848 0.76070 1.90738 1.15465 1.88177 1.52695 1.45985 1.10894 1.05332 1.72972 1.21348 0.95808 0.81322 0.99257 1.18358 0.91828 0.91020 0.93694 1.21685 0.99942 0.99683 0.96662 1.21687 0.99938 0.99700 0.96642 1.21259 0.92631 0.91684 1.51401 0.93806 1.25405 0.95453 1.01377 0.94694 1.69887 1.04621 1.28502 1.50564 0.85862 0.78355 0.80480 0.78367 1.20387 1.20793 1.20372 1.20993 1.01576 0.89334 0.96431 1.16871 0.86871 0.82321 1.11917 1.91480 1.77006 1.48765 1.94654 0.90487 0.86028 0.90483 0.79829 0.82129 0.75142 0.94068 0.94077 0.94096 0.91763 0.96367 0.96365 0.91770 0.94102 0.93000 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.78 10.35 -90.94 -0.94 -6.72 16 3 C 0.12 2.47 6.70 22.66 0.15 2.63 16 4 C -0.18 -2.62 9.01 22.32 0.20 -2.41 16 5 C -0.04 -0.77 9.53 22.51 0.21 -0.55 16 6 C -0.15 -4.10 5.87 -20.08 -0.12 -4.22 16 7 C 0.55 18.96 7.76 86.71 0.67 19.63 16 8 O -0.59 -25.08 16.34 -3.99 -0.07 -25.14 16 9 N -0.70 -23.36 4.91 -466.21 -2.29 -25.65 16 10 C 0.15 6.08 4.50 86.38 0.39 6.47 16 11 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 12 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 13 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 14 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 15 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 16 C 0.03 1.59 5.15 84.65 0.44 2.02 16 17 N -0.90 -46.60 9.35 21.45 0.20 -46.40 16 18 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.06 -1.70 9.56 22.55 0.22 -1.49 16 23 C 0.04 0.99 7.30 22.41 0.16 1.16 16 24 F -0.14 -3.80 17.10 44.97 0.77 -3.03 16 25 H 0.08 0.35 7.64 -2.38 -0.02 0.33 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.08 0.35 7.66 -2.39 -0.02 0.33 16 28 H 0.18 1.28 6.27 -2.91 -0.02 1.26 16 29 H 0.16 2.28 6.39 -2.91 -0.02 2.26 16 30 H 0.41 11.25 4.18 -92.71 -0.39 10.86 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 34 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 38 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 39 H 0.26 13.09 8.31 -92.70 -0.77 12.31 16 40 H 0.14 4.07 7.64 -2.91 -0.02 4.05 16 Total: -1.00 -64.74 331.20 5.17 -59.57 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.69 Total: 13.17 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.78 Total: -9.84 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.09 Total: -72.04 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.01 Total: -31.86 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.77 Total: -3.03 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -64.74 5.17 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315352468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.719 kcal (2) G-P(sol) polarization free energy of solvation -64.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds