Wall clock time and date at job start Tue Mar 31 2020 07:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53010 * 109.47146 * 299.99645 * 14 13 12 16 16 C 1.53000 * 109.47166 * 59.99736 * 14 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 26 26 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 28 28 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 30 30 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 32 32 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 33 33 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 34 34 H 1.09003 * 109.46863 * 59.99870 * 15 14 13 35 35 H 1.09001 * 109.47172 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.46753 * 300.00454 * 15 14 13 37 37 H 1.08990 * 109.47258 * 60.00092 * 16 14 13 38 38 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 39 39 H 1.08999 * 109.47407 * 299.99599 * 16 14 13 40 40 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 6 5.6897 -2.1726 -2.6095 15 6 4.3601 -2.4309 -3.3212 16 6 6.4529 -1.0661 -3.3403 17 6 6.5134 -3.4346 -2.6095 18 1 6.8150 -3.8826 -1.6743 19 6 6.8819 -4.0173 -3.8035 20 7 6.5142 -3.4721 -4.9424 21 14 7.9035 -5.5812 -3.8035 22 1 8.1836 -5.9895 -2.4035 23 1 7.1541 -6.6619 -4.4932 24 1 9.1843 -5.3359 -4.5138 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2141 2.3177 0.0092 29 1 1.3275 4.5074 -0.0025 30 1 3.7815 4.6547 -0.0112 31 1 4.3497 -0.1096 -2.0071 32 1 6.3677 -1.5554 -0.6600 33 1 4.8768 -2.5277 -0.6464 34 1 3.7647 -1.5178 -3.3211 35 1 4.5519 -2.7391 -4.3489 36 1 3.8164 -3.2191 -2.8004 37 1 7.4001 -0.8822 -2.8334 38 1 6.6444 -1.3747 -4.3680 39 1 5.8575 -0.1531 -3.3404 40 1 6.7732 -3.8822 -5.7824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315456941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:15 Heat of formation + Delta-G solvation = -96.582543 kcal Electronic energy + Delta-G solvation = -24150.242285 eV Core-core repulsion = 20458.981834 eV Total energy + Delta-G solvation = -3691.260451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.02050 -40.52550 -38.84186 -37.35937 -36.25161 -33.23048 -31.63834 -30.53910 -30.15887 -27.61681 -25.78019 -25.67739 -25.10185 -23.46119 -22.42700 -20.43778 -18.83069 -18.62259 -17.47883 -17.18822 -16.20853 -16.16812 -15.84382 -15.53647 -15.28768 -14.95652 -14.82301 -14.53407 -14.28497 -13.43103 -13.09422 -12.91169 -12.70835 -12.60314 -12.55046 -12.14574 -11.95458 -11.53727 -11.32875 -11.29245 -11.16105 -10.84144 -10.63541 -10.34363 -10.17681 -9.66953 -9.58897 -9.23878 -9.03128 -8.73945 -8.54955 -8.41982 -8.27185 -5.98740 -4.08460 0.76811 1.00970 2.86027 2.97382 3.23487 3.29680 3.38078 3.43084 3.71535 4.15249 4.42585 4.47508 4.69968 4.80625 4.89061 4.92350 5.04137 5.12907 5.28075 5.29108 5.61732 5.78406 5.83043 6.00478 6.27760 6.38077 6.41983 6.55858 6.82215 6.88327 6.98443 7.04712 7.06486 7.07122 7.39836 7.60186 7.73047 8.04932 8.06864 8.18667 8.42074 8.69097 8.92386 9.57083 11.02773 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.004023 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.109370 B = 6958.514900 C = 7443.050307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.190 3.810 4 C -0.224 4.224 5 C -0.039 4.039 6 C -0.195 4.195 7 C 0.172 3.828 8 F -0.122 7.122 9 C -0.191 4.191 10 C 0.564 3.436 11 O -0.539 6.539 12 N -0.701 5.701 13 C 0.131 3.869 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.399 0.601 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 14.226 6.045 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.142 3.858 4 C -0.243 4.243 5 C -0.057 4.057 6 C -0.214 4.214 7 C 0.151 3.849 8 F -0.100 7.100 9 C -0.196 4.196 10 C 0.348 3.652 11 O -0.416 6.416 12 N -0.351 5.351 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.188 4.188 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.234 0.766 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.896 13.581 6.587 19.853 hybrid contribution 0.386 -0.469 -0.453 0.758 sum -12.510 13.112 6.134 19.132 Atomic orbital electron populations 1.23183 0.77532 1.04701 1.01462 1.86162 1.21956 1.25853 1.87194 1.18609 0.89867 0.85106 0.92186 1.21226 1.00574 0.91757 1.10760 1.20837 0.93423 0.97431 0.94040 1.20964 0.94312 0.97486 1.08679 1.17301 0.77269 0.92255 0.98027 1.91574 1.28512 1.96872 1.93092 1.19311 0.92058 0.94214 1.14015 1.17657 0.79605 0.83138 0.84822 1.90772 1.55802 1.63652 1.31418 1.46266 1.53332 1.28111 1.07383 1.21779 0.93259 0.83282 1.00761 1.18371 0.93686 0.94675 0.87801 1.21818 0.95989 0.96753 1.04167 1.21827 0.97727 0.95074 1.04214 1.21024 1.32460 1.08026 0.92698 0.92354 1.24878 0.95858 0.97281 0.95516 1.69821 1.45979 1.39524 0.97164 0.86514 0.79968 0.83257 0.78148 1.19748 1.21099 1.21077 0.92152 0.87674 0.92312 0.84297 0.84378 0.84027 0.76615 0.92538 0.92500 0.97541 0.89610 0.95415 0.95370 0.89584 0.97538 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.17 9.95 -18.64 -0.19 -4.35 16 3 C 0.19 2.58 6.70 -38.70 -0.26 2.32 16 4 C -0.22 -2.16 9.03 -39.47 -0.36 -2.51 16 5 C -0.04 -0.33 10.02 -39.56 -0.40 -0.73 16 6 C -0.20 -2.03 10.00 -39.56 -0.40 -2.42 16 7 C 0.17 2.47 7.29 -38.98 -0.28 2.18 16 8 F -0.12 -1.96 16.83 2.25 0.04 -1.92 16 9 C -0.19 -3.10 5.64 -104.79 -0.59 -3.69 16 10 C 0.56 11.36 6.43 -12.53 -0.08 11.28 16 11 O -0.54 -12.75 17.11 5.27 0.09 -12.66 16 12 N -0.70 -14.00 4.95 -61.40 -0.30 -14.31 16 13 C 0.13 2.97 4.50 -4.04 -0.02 2.95 16 14 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 16 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 17 C -0.50 -13.48 8.01 -34.44 -0.28 -13.75 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 20 N -0.89 -23.93 9.35 55.43 0.52 -23.41 16 21 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.14 0.91 6.29 -52.49 -0.33 0.58 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.40 7.36 6.15 -40.82 -0.25 7.11 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 35 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -31.62 334.80 -6.28 -37.90 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.22 Total: 3.45 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.24 Total: -5.73 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.21 Total: -37.72 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.10 Total: -17.01 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.62 -6.28 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315456941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.682 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds