Wall clock time and date at job start Tue Mar 31 2020 07:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53010 * 109.47146 * 299.99645 * 14 13 12 16 16 C 1.53000 * 109.47166 * 59.99736 * 14 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 26 26 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 28 28 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 30 30 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 32 32 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 33 33 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 34 34 H 1.09003 * 109.46863 * 59.99870 * 15 14 13 35 35 H 1.09001 * 109.47172 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.46753 * 300.00454 * 15 14 13 37 37 H 1.08990 * 109.47258 * 60.00092 * 16 14 13 38 38 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 39 39 H 1.08999 * 109.47407 * 299.99599 * 16 14 13 40 40 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 6 5.6897 -2.1726 -2.6095 15 6 4.3601 -2.4309 -3.3212 16 6 6.4529 -1.0661 -3.3403 17 6 6.5134 -3.4346 -2.6095 18 1 6.8150 -3.8826 -1.6743 19 6 6.8819 -4.0173 -3.8035 20 7 6.5142 -3.4721 -4.9424 21 14 7.9035 -5.5812 -3.8035 22 1 8.1836 -5.9895 -2.4035 23 1 7.1541 -6.6619 -4.4932 24 1 9.1843 -5.3359 -4.5138 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2141 2.3177 0.0092 29 1 1.3275 4.5074 -0.0025 30 1 3.7815 4.6547 -0.0112 31 1 4.3497 -0.1096 -2.0071 32 1 6.3677 -1.5554 -0.6600 33 1 4.8768 -2.5277 -0.6464 34 1 3.7647 -1.5178 -3.3211 35 1 4.5519 -2.7391 -4.3489 36 1 3.8164 -3.2191 -2.8004 37 1 7.4001 -0.8822 -2.8334 38 1 6.6444 -1.3747 -4.3680 39 1 5.8575 -0.1531 -3.3404 40 1 6.7732 -3.8822 -5.7824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315456941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:15 Heat of formation + Delta-G solvation = -117.009087 kcal Electronic energy + Delta-G solvation = -24151.128046 eV Core-core repulsion = 20458.981834 eV Total energy + Delta-G solvation = -3692.146212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.11883 -41.57208 -40.30143 -38.33653 -38.02800 -35.06695 -33.07765 -32.05462 -30.99597 -28.32720 -27.61494 -27.57634 -26.97352 -24.68969 -23.29560 -21.86885 -20.68417 -19.71468 -18.77460 -18.16975 -17.80558 -17.28733 -17.10978 -16.69547 -16.62661 -16.47552 -16.00411 -15.93458 -15.65294 -14.95632 -14.78734 -14.52660 -14.07212 -13.86243 -13.44564 -13.38879 -13.23928 -13.14013 -12.82212 -12.70735 -12.59542 -12.33007 -12.29545 -12.15067 -12.01660 -11.53691 -11.39446 -11.03897 -10.73123 -10.42634 -10.07441 -10.01088 -9.40938 -8.03972 -6.20057 -0.14610 0.15877 1.41060 1.43372 1.44590 1.54806 2.06678 2.18292 2.44242 2.49161 3.19442 3.24212 3.57590 3.87030 3.91541 4.04519 4.26429 4.34218 4.38296 4.41312 4.43711 4.64388 4.73014 4.77809 4.91646 4.98660 5.00329 5.06111 5.09061 5.14132 5.24186 5.27860 5.48781 5.61890 5.62260 5.64890 6.09028 6.16070 6.24894 6.39875 6.48642 6.82855 7.11384 7.47506 8.95695 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.004023 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.109370 B = 6958.514900 C = 7443.050307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.177 3.823 4 C -0.209 4.209 5 C -0.017 4.017 6 C -0.185 4.185 7 C 0.144 3.856 8 F -0.144 7.144 9 C -0.231 4.231 10 C 0.565 3.435 11 O -0.586 6.586 12 N -0.696 5.696 13 C 0.146 3.854 14 C 0.052 3.948 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.529 4.529 18 H 0.044 0.956 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.279 1.279 24 H -0.280 1.280 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.407 0.593 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 16.622 5.758 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.130 3.870 4 C -0.228 4.228 5 C -0.035 4.035 6 C -0.203 4.203 7 C 0.124 3.876 8 F -0.122 7.122 9 C -0.235 4.235 10 C 0.351 3.649 11 O -0.467 6.467 12 N -0.346 5.346 13 C 0.023 3.977 14 C 0.051 3.949 15 C -0.175 4.175 16 C -0.177 4.177 17 C -0.567 4.567 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.206 1.206 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.195 0.805 29 H 0.207 0.793 30 H 0.188 0.812 31 H 0.243 0.757 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.358 15.998 6.277 23.048 hybrid contribution 1.032 -1.154 -0.344 1.586 sum -14.326 14.844 5.933 21.466 Atomic orbital electron populations 1.23523 0.74909 1.05861 1.03544 1.86109 1.24850 1.26828 1.87372 1.18830 0.89048 0.86451 0.92671 1.21691 1.02221 0.90525 1.08336 1.21471 0.92739 0.98812 0.90485 1.21376 0.95155 0.97013 1.06800 1.17713 0.76774 0.93045 1.00076 1.91513 1.30162 1.96971 1.93556 1.19162 0.93121 0.92668 1.18594 1.18338 0.78840 0.83999 0.83696 1.90720 1.57657 1.65465 1.32882 1.46132 1.53015 1.27264 1.08163 1.21375 0.92625 0.84129 0.99568 1.18370 0.93901 0.94093 0.88524 1.21640 0.95738 0.97640 1.02469 1.21665 0.97645 0.95851 1.02569 1.21255 1.33597 1.09449 0.92435 0.93760 1.25466 0.96694 0.99702 0.95226 1.69914 1.46193 1.40284 0.97388 0.85651 0.78749 0.80259 0.77818 1.20101 1.20477 1.20588 0.89912 0.87268 0.90173 0.80492 0.79298 0.81248 0.75652 0.94358 0.94148 0.95026 0.91530 0.96174 0.96310 0.91464 0.95073 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -9.14 9.95 -89.63 -0.89 -10.03 16 3 C 0.18 4.54 6.70 22.84 0.15 4.69 16 4 C -0.21 -3.09 9.03 22.34 0.20 -2.89 16 5 C -0.02 -0.20 10.02 22.29 0.22 0.02 16 6 C -0.18 -3.19 10.00 22.28 0.22 -2.97 16 7 C 0.14 4.04 7.29 22.66 0.17 4.21 16 8 F -0.14 -4.71 16.83 44.97 0.76 -3.96 16 9 C -0.23 -7.51 5.64 -19.97 -0.11 -7.62 16 10 C 0.56 23.74 6.43 86.65 0.56 24.29 16 11 O -0.59 -29.39 17.11 -4.04 -0.07 -29.46 16 12 N -0.70 -28.75 4.95 -466.42 -2.31 -31.06 16 13 C 0.15 6.94 4.50 86.38 0.39 7.33 16 14 C 0.05 2.56 0.50 -52.93 -0.03 2.53 16 15 C -0.12 -5.50 8.08 71.99 0.58 -4.92 16 16 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 17 C -0.53 -29.12 8.01 25.60 0.21 -28.92 16 18 H 0.04 2.50 7.74 -2.91 -0.02 2.47 16 19 C 0.03 1.56 5.15 84.65 0.44 2.00 16 20 N -0.90 -48.89 9.35 21.45 0.20 -48.69 16 21 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H 0.08 0.76 7.67 -2.39 -0.02 0.75 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.08 0.75 7.65 -2.39 -0.02 0.74 16 28 H 0.18 1.22 6.29 -2.91 -0.02 1.21 16 29 H 0.19 0.35 8.06 -2.91 -0.02 0.32 16 30 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.41 15.20 6.15 -92.71 -0.57 14.63 16 32 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 35 H 0.07 3.41 6.07 -2.39 -0.01 3.39 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 39 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 40 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -73.04 334.80 4.90 -68.14 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.50 Total: 15.52 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.69 Total: -6.03 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.11 Total: -79.76 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.96 Total: -39.49 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.76 Total: -3.96 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.04 4.90 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315456941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.870 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds