Wall clock time and date at job start Tue Mar 31 2020 07:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 23 23 F 1.35102 * 120.08629 * 180.27262 * 22 6 5 24 24 C 1.38062 * 119.83594 * 0.25414 * 22 6 5 25 25 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 26 26 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 28 28 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 34 34 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 36 36 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 37 37 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 39 39 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.96622 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 1.9648 8.4173 -1.2373 13 6 1.9648 8.4047 1.2613 14 6 3.5207 9.8833 0.0187 15 1 4.5992 9.9416 0.0191 16 6 2.7678 11.0383 0.0239 17 7 1.4546 10.9674 0.0240 18 14 3.6132 12.7042 0.0322 19 1 4.4619 12.8346 -1.1792 20 1 2.5886 13.7791 0.0376 21 1 4.4609 12.8230 1.2457 22 6 4.0623 2.5073 -0.0002 23 9 5.4116 2.5757 0.0001 24 6 3.4317 1.2791 -0.0002 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2069 2.3142 0.0014 29 1 1.3122 4.5066 0.0096 30 1 2.2628 6.0731 0.0005 31 1 4.5170 7.5189 0.8975 32 1 4.5170 7.5279 -0.8825 33 1 1.4716 7.4453 -1.2421 34 1 1.2125 9.2061 -1.2330 35 1 2.5875 8.5132 -2.1268 36 1 2.5875 8.4917 2.1516 37 1 1.2125 9.1935 1.2650 38 1 1.4716 7.4327 1.2563 39 1 0.9250 11.7800 0.0273 40 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316037430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:18 Heat of formation + Delta-G solvation = -96.759164 kcal Electronic energy + Delta-G solvation = -23582.414056 eV Core-core repulsion = 19891.145947 eV Total energy + Delta-G solvation = -3691.268109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.87147 -40.51416 -39.29321 -37.20492 -36.27954 -33.38130 -31.59578 -30.78038 -30.14959 -27.83982 -25.75331 -25.68260 -25.00880 -23.61018 -22.48183 -20.37376 -19.02965 -18.65283 -17.61450 -17.08234 -16.27347 -16.16644 -15.86665 -15.55453 -15.08970 -15.03297 -14.69241 -14.55046 -14.40950 -13.49806 -13.10449 -12.95365 -12.91050 -12.68769 -12.57282 -12.44876 -12.19444 -11.44496 -11.35507 -11.23670 -11.20241 -10.85498 -10.73969 -10.40547 -10.21738 -9.65699 -9.63792 -9.28484 -9.16931 -8.81769 -8.66536 -8.43111 -8.28295 -6.03404 -4.13363 0.65565 0.90982 2.72098 2.88708 3.30011 3.34051 3.37669 3.63026 3.73971 4.14938 4.34876 4.39533 4.58856 4.71754 4.76263 4.87292 4.97089 5.09314 5.11512 5.23488 5.60503 5.73692 5.86671 5.93042 6.21616 6.31843 6.35655 6.48768 6.76268 6.78488 6.89562 6.92047 6.99073 6.99932 7.33011 7.53201 7.67917 7.98776 8.00078 8.12824 8.36776 8.65091 8.87097 9.52509 10.98057 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.003340 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.269078 B = 8381.464733 C = 9215.353167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.176 3.824 4 C -0.227 4.227 5 C -0.016 4.016 6 C -0.202 4.202 7 C 0.549 3.451 8 O -0.538 6.538 9 N -0.710 5.710 10 C 0.132 3.868 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.198 3.802 23 F -0.108 7.108 24 C -0.204 4.204 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -19.472 -0.043 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.130 3.870 4 C -0.246 4.246 5 C -0.035 4.035 6 C -0.207 4.207 7 C 0.335 3.665 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.010 3.990 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.177 3.823 23 F -0.086 7.086 24 C -0.223 4.223 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.232 0.768 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.161 -19.443 -0.043 20.116 hybrid contribution -0.123 1.021 0.007 1.028 sum -5.284 -18.422 -0.036 19.165 Atomic orbital electron populations 1.23176 0.77545 1.04389 1.01974 1.86037 1.22056 1.26491 1.87744 1.18788 0.91334 0.84473 0.92432 1.21213 1.00748 0.91676 1.10962 1.21054 0.92427 0.98084 0.91942 1.20173 0.94140 0.93653 1.12698 1.17881 0.87091 0.83709 0.77847 1.90813 1.13186 1.87400 1.50334 1.46204 1.10240 1.06432 1.73255 1.21768 0.96492 0.80027 1.00753 1.18361 0.91408 0.91868 0.92834 1.21836 1.00821 0.98551 0.97643 1.21837 1.00820 0.98532 0.97663 1.20951 0.92959 0.89652 1.50965 0.92423 1.24871 0.94841 0.98992 0.94740 1.69786 1.04127 1.28064 1.50542 0.86625 0.79152 0.83326 0.78717 1.20261 1.21333 1.20267 1.17235 0.77548 0.92114 0.95369 1.91616 1.27594 1.96978 1.92404 1.20166 0.92473 0.97532 1.12164 0.92081 0.87884 0.92075 0.84163 0.84070 0.76797 0.92490 0.92479 0.97636 0.89536 0.95345 0.95347 0.89539 0.97635 0.92946 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.80 10.48 -18.84 -0.20 -2.99 16 3 C 0.18 1.83 6.69 -39.04 -0.26 1.56 16 4 C -0.23 -2.16 9.01 -39.49 -0.36 -2.51 16 5 C -0.02 -0.19 9.53 -39.22 -0.37 -0.56 16 6 C -0.20 -3.02 5.88 -104.90 -0.62 -3.63 16 7 C 0.55 10.22 7.76 -12.51 -0.10 10.12 16 8 O -0.54 -12.04 15.33 5.27 0.08 -11.96 16 9 N -0.71 -12.89 4.91 -61.37 -0.30 -13.19 16 10 C 0.13 2.82 4.50 -4.04 -0.02 2.81 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 13 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 14 C -0.51 -13.22 8.01 -34.44 -0.28 -13.50 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 18 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.20 2.87 7.28 -38.99 -0.28 2.59 16 23 F -0.11 -1.81 15.54 2.25 0.03 -1.77 16 24 C -0.20 -2.37 9.95 -39.43 -0.39 -2.76 16 25 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 28 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 29 H 0.14 1.39 6.39 -52.48 -0.34 1.06 16 30 H 0.40 6.28 4.18 -40.82 -0.17 6.11 16 31 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 34 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -30.23 329.53 -6.22 -36.46 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.05 Total: 2.80 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.25 Total: -7.11 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.22 Total: -36.03 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.12 Total: -14.95 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.23 -6.22 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316037430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.302 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds