Wall clock time and date at job start Tue Mar 31 2020 07:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 23 23 F 1.35102 * 120.08629 * 180.27262 * 22 6 5 24 24 C 1.38062 * 119.83594 * 0.25414 * 22 6 5 25 25 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 26 26 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 28 28 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 34 34 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 36 36 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 37 37 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 39 39 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.96622 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 1.9648 8.4173 -1.2373 13 6 1.9648 8.4047 1.2613 14 6 3.5207 9.8833 0.0187 15 1 4.5992 9.9416 0.0191 16 6 2.7678 11.0383 0.0239 17 7 1.4546 10.9674 0.0240 18 14 3.6132 12.7042 0.0322 19 1 4.4619 12.8346 -1.1792 20 1 2.5886 13.7791 0.0376 21 1 4.4609 12.8230 1.2457 22 6 4.0623 2.5073 -0.0002 23 9 5.4116 2.5757 0.0001 24 6 3.4317 1.2791 -0.0002 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2069 2.3142 0.0014 29 1 1.3122 4.5066 0.0096 30 1 2.2628 6.0731 0.0005 31 1 4.5170 7.5189 0.8975 32 1 4.5170 7.5279 -0.8825 33 1 1.4716 7.4453 -1.2421 34 1 1.2125 9.2061 -1.2330 35 1 2.5875 8.5132 -2.1268 36 1 2.5875 8.4917 2.1516 37 1 1.2125 9.1935 1.2650 38 1 1.4716 7.4327 1.2563 39 1 0.9250 11.7800 0.0273 40 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316037430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:17 Heat of formation + Delta-G solvation = -115.256968 kcal Electronic energy + Delta-G solvation = -23583.216181 eV Core-core repulsion = 19891.145947 eV Total energy + Delta-G solvation = -3692.070234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.01734 -41.43601 -40.57441 -38.33531 -37.84233 -35.08535 -33.02919 -32.03105 -31.19906 -28.43095 -27.55539 -27.44200 -26.73393 -24.63706 -23.48657 -21.72208 -20.66330 -19.67509 -18.88573 -18.04497 -17.76002 -17.09799 -17.09325 -16.63524 -16.50484 -16.49147 -16.06635 -15.80566 -15.62969 -14.84139 -14.64540 -14.55536 -14.01331 -13.97838 -13.65379 -13.36924 -13.18551 -13.18193 -13.07889 -12.68227 -12.62670 -12.25065 -12.13083 -12.04555 -11.98666 -11.48597 -11.32020 -10.96944 -10.70542 -10.39465 -10.07837 -10.05432 -9.42645 -8.02189 -6.17559 -0.34723 0.02966 1.44419 1.45652 1.52194 1.74282 2.04753 2.21247 2.48559 2.59161 3.20917 3.21460 3.54296 3.68049 3.83450 4.09712 4.16743 4.39664 4.43047 4.47449 4.49807 4.68299 4.77082 4.80827 4.87714 4.98228 5.00263 5.05561 5.07340 5.12200 5.19772 5.33515 5.44854 5.55313 5.67769 5.67996 6.16242 6.21215 6.21769 6.43850 6.58431 6.85550 7.22128 7.49896 8.96578 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.003340 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.269078 B = 8381.464733 C = 9215.353167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.189 3.811 4 C -0.211 4.211 5 C -0.009 4.009 6 C -0.228 4.228 7 C 0.547 3.453 8 O -0.586 6.586 9 N -0.701 5.701 10 C 0.147 3.853 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.532 4.532 15 H 0.043 0.957 16 C 0.031 3.969 17 N -0.897 5.897 18 Si 0.943 3.057 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.175 3.825 23 F -0.132 7.132 24 C -0.204 4.204 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.409 0.591 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 -21.252 -0.044 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.141 3.859 4 C -0.230 4.230 5 C -0.028 4.028 6 C -0.232 4.232 7 C 0.336 3.664 8 O -0.468 6.468 9 N -0.353 5.353 10 C 0.024 3.976 11 C 0.052 3.948 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.571 4.571 15 H 0.061 0.939 16 C -0.169 4.169 17 N -0.535 5.535 18 Si 0.770 3.230 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.154 3.846 23 F -0.110 7.110 24 C -0.224 4.224 25 H 0.093 0.907 26 H 0.141 0.859 27 H 0.093 0.907 28 H 0.197 0.803 29 H 0.178 0.822 30 H 0.248 0.752 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.898 -21.242 -0.044 22.663 hybrid contribution 0.602 1.412 0.007 1.535 sum -7.295 -19.830 -0.037 21.130 Atomic orbital electron populations 1.23575 0.75131 1.06360 1.03296 1.86057 1.24476 1.25614 1.86963 1.18881 0.90927 0.85519 0.90584 1.21576 1.02544 0.90255 1.08606 1.21254 0.90759 0.99832 0.90907 1.19932 0.95638 0.91373 1.16284 1.18460 0.86627 0.84954 0.76346 1.90780 1.15403 1.88184 1.52475 1.45953 1.10753 1.05229 1.73329 1.21336 0.95857 0.81414 0.99034 1.18357 0.91774 0.90960 0.93746 1.21680 0.99924 0.99688 0.96598 1.21681 0.99923 0.99671 0.96617 1.21247 0.92598 0.91690 1.51555 0.93915 1.25408 0.95468 1.01400 0.94620 1.69879 1.04599 1.28571 1.50485 0.85847 0.78367 0.80402 0.78359 1.20386 1.20633 1.20401 1.17544 0.76761 0.93248 0.97047 1.91550 1.29381 1.97155 1.92886 1.20270 0.93564 0.96789 1.11753 0.90683 0.85886 0.90675 0.80292 0.82183 0.75213 0.94327 0.94315 0.94185 0.91630 0.96417 0.96417 0.91634 0.94177 0.92938 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.50 10.48 -90.32 -0.95 -5.45 16 3 C 0.19 3.27 6.69 22.62 0.15 3.42 16 4 C -0.21 -3.10 9.01 22.33 0.20 -2.89 16 5 C -0.01 -0.18 9.53 22.50 0.21 0.04 16 6 C -0.23 -6.62 5.88 -20.05 -0.12 -6.74 16 7 C 0.55 20.62 7.76 86.67 0.67 21.29 16 8 O -0.59 -27.37 15.33 -4.04 -0.06 -27.43 16 9 N -0.70 -25.05 4.91 -466.33 -2.29 -27.34 16 10 C 0.15 6.43 4.50 86.38 0.39 6.82 16 11 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 12 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 13 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 14 C -0.53 -28.27 8.01 25.60 0.21 -28.06 16 15 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 16 C 0.03 1.63 5.15 84.65 0.44 2.07 16 17 N -0.90 -47.11 9.35 21.45 0.20 -46.91 16 18 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.17 5.05 7.28 22.65 0.16 5.22 16 23 F -0.13 -4.61 15.54 44.97 0.70 -3.91 16 24 C -0.20 -4.44 9.95 22.37 0.22 -4.22 16 25 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16 26 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 28 H 0.18 1.24 6.27 -2.91 -0.02 1.22 16 29 H 0.16 2.49 6.39 -2.91 -0.02 2.47 16 30 H 0.41 12.06 4.18 -92.71 -0.39 11.67 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 34 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 38 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 39 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 40 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -67.86 329.53 5.10 -62.76 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.68 Total: 12.57 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.79 Total: -8.89 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.09 Total: -74.25 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.01 Total: -32.88 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.70 Total: -3.91 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -67.86 5.10 -62.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316037430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.498 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds