Wall clock time and date at job start Tue Mar 31 2020 08:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 H 1.09008 * 109.47339 * 60.00017 * 16 14 13 18 18 C 1.53000 * 109.47221 * 299.99958 * 16 14 13 19 19 O 1.42905 * 109.46956 * 65.00159 * 18 16 14 20 20 C 1.50695 * 109.47300 * 179.97438 * 16 14 13 21 21 C 1.38247 * 119.97750 * 59.72567 * 20 16 14 22 22 C 1.38199 * 120.03067 * 179.76713 * 21 20 16 23 23 C 1.38463 * 119.96895 * 0.50864 * 22 21 20 24 24 F 1.35098 * 120.02123 * 179.76639 * 23 22 21 25 25 C 1.38457 * 119.95096 * 359.74566 * 23 22 21 26 26 C 1.38204 * 119.97333 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 34 34 H 1.08997 * 109.46948 * 184.99318 * 18 16 14 35 35 H 1.08995 * 109.47276 * 305.00004 * 18 16 14 36 36 H 0.96695 * 113.99988 * 180.02562 * 19 18 16 37 37 H 1.08000 * 119.98020 * 0.02562 * 21 20 16 38 38 H 1.07995 * 120.01394 * 180.25695 * 22 21 20 39 39 H 1.08001 * 120.01155 * 179.97438 * 25 23 22 40 40 H 1.07996 * 119.98104 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 1 0.7280 4.1543 2.8665 18 6 0.0805 2.3224 3.7972 19 8 1.4276 1.8898 3.9983 20 6 -1.3609 3.8871 2.5225 21 6 -2.4140 3.0351 2.2460 22 6 -3.6967 3.5362 2.1297 23 6 -3.9253 4.8935 2.2799 24 9 -5.1782 5.3851 2.1617 25 6 -2.8691 5.7465 2.5516 26 6 -1.5881 5.2423 2.6732 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 -0.2921 2.7863 4.7104 35 1 -0.5428 1.4646 3.5448 36 1 1.5308 1.2426 4.7093 37 1 -2.2347 1.9770 2.1250 38 1 -4.5197 2.8699 1.9178 39 1 -3.0463 6.8055 2.6685 40 1 -0.7642 5.9075 2.8855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339352605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:33 Heat of formation + Delta-G solvation = -138.366470 kcal Electronic energy + Delta-G solvation = -24170.222335 eV Core-core repulsion = 20477.149998 eV Total energy + Delta-G solvation = -3693.072338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.89091 -41.31554 -39.59502 -37.69320 -36.84923 -34.20250 -33.96258 -32.57597 -32.08791 -29.55739 -28.55666 -25.34272 -24.76853 -23.96527 -23.06060 -21.55015 -20.80136 -18.93118 -18.70332 -18.34765 -17.72667 -17.13736 -16.93758 -16.56820 -16.37862 -16.30885 -15.91897 -15.13780 -15.08714 -14.88553 -14.56432 -14.45055 -14.32096 -13.79369 -13.69462 -13.28686 -13.21578 -13.08149 -12.89988 -12.63751 -12.60389 -12.25224 -12.15600 -11.99904 -11.84350 -11.54881 -11.04897 -11.01875 -10.54774 -10.36319 -10.00236 -9.56221 -9.47817 -8.13459 -6.30398 0.11958 0.31777 1.45348 1.47205 1.54965 1.93284 2.37299 2.51446 2.83176 3.15163 3.23657 3.32696 3.70582 3.86199 4.00242 4.08305 4.21649 4.31044 4.36986 4.44426 4.52539 4.60220 4.69164 4.80122 4.82124 4.98875 5.00894 5.10739 5.16359 5.25804 5.29985 5.48062 5.55888 5.59806 5.70952 5.85465 5.92611 6.02442 6.22009 6.78372 6.95096 7.15296 7.37575 7.73511 8.91425 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003859 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.107399 B = 7254.489480 C = 7524.171873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.693 5.693 14 C 0.501 3.499 15 O -0.584 6.584 16 C -0.064 4.064 17 H 0.123 0.877 18 C 0.097 3.903 19 O -0.584 6.584 20 C -0.080 4.080 21 C -0.065 4.065 22 C -0.162 4.162 23 C 0.081 3.919 24 F -0.148 7.148 25 C -0.154 4.154 26 C -0.080 4.080 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.403 0.597 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 6.167 16.019 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.343 5.343 14 C 0.287 3.713 15 O -0.465 6.465 16 C -0.085 4.085 17 H 0.141 0.859 18 C 0.019 3.981 19 O -0.393 6.393 20 C -0.081 4.081 21 C -0.083 4.083 22 C -0.180 4.180 23 C 0.062 3.938 24 F -0.126 7.126 25 C -0.173 4.173 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.255 0.745 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.416 6.456 14.698 18.611 hybrid contribution 0.704 -0.535 -0.088 0.889 sum -8.712 5.920 14.610 18.011 Atomic orbital electron populations 1.21654 0.96876 0.98935 1.00277 1.21738 0.93826 0.99156 1.00962 1.18321 0.93371 0.89233 0.81653 0.98783 1.21563 0.91718 1.38794 1.06512 0.91477 1.25752 1.03210 0.94422 0.95018 1.70048 1.37035 1.38463 1.09814 0.85460 0.79292 0.78424 0.77532 1.18913 1.21182 1.19729 1.46305 1.15659 1.55192 1.17172 1.20831 0.81974 0.78823 0.89636 1.90673 1.52381 1.61335 1.42111 1.20309 0.95316 0.99985 0.92937 0.85905 1.21981 0.84151 0.95621 0.96337 1.86340 1.26750 1.65503 1.60721 1.19330 0.93052 0.94330 1.01391 1.20850 0.91448 1.00305 0.95699 1.21241 0.98689 0.94135 1.03968 1.17925 0.79653 0.92805 1.03407 1.91468 1.39048 1.88367 1.93744 1.21325 0.91649 1.01168 1.03113 1.21169 0.97184 0.94019 0.97391 0.93786 0.95790 0.93414 0.94273 0.91359 0.92692 0.75634 0.89477 0.93529 0.74541 0.85967 0.83779 0.82385 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 14.42 2.24 44.25 0.10 14.52 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -52.86 11.29 21.45 0.24 -52.62 16 9 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 N -0.69 -28.96 4.76 -446.11 -2.12 -31.08 16 14 C 0.50 19.20 5.59 87.66 0.49 19.69 16 15 O -0.58 -26.79 12.22 -3.04 -0.04 -26.83 16 16 C -0.06 -1.68 2.67 -12.29 -0.03 -1.72 16 17 H 0.12 2.83 7.87 -2.38 -0.02 2.81 16 18 C 0.10 1.95 6.16 71.98 0.44 2.39 16 19 O -0.58 -11.97 11.43 -148.98 -1.70 -13.68 16 20 C -0.08 -2.03 4.40 -19.86 -0.09 -2.12 16 21 C -0.06 -1.72 7.97 22.26 0.18 -1.55 16 22 C -0.16 -3.98 10.03 22.31 0.22 -3.76 16 23 C 0.08 1.95 7.30 22.38 0.16 2.11 16 24 F -0.15 -3.62 17.27 44.97 0.78 -2.85 16 25 C -0.15 -3.18 10.03 22.31 0.22 -2.96 16 26 C -0.08 -1.68 9.67 22.26 0.22 -1.46 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 29 H 0.05 2.00 5.64 -2.38 -0.01 1.99 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.41 15.42 6.60 -92.71 -0.61 14.81 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 0.98 7.59 -2.39 -0.02 0.96 16 36 H 0.40 4.51 9.12 -74.06 -0.68 3.84 16 37 H 0.12 3.39 7.57 -2.91 -0.02 3.37 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.16 2.43 7.94 -2.91 -0.02 2.41 16 Total: -1.00 -69.13 332.17 2.34 -66.79 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.21 Total: 29.00 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.37 Total: -13.21 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.88 Total: -83.70 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.74 Total: -40.51 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -69.13 2.34 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339352605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.577 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds